Wall clock time and date at job start Tue Mar 31 2020 15:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99961 * 2 1 4 4 C 1.50698 * 109.45257 * 296.19881 * 3 2 1 5 5 O 1.21283 * 120.00448 * 143.87854 * 4 3 2 6 6 N 1.34777 * 119.99424 * 323.87856 * 4 3 2 7 7 C 1.37106 * 119.99905 * 175.21320 * 6 4 3 8 8 H 1.08001 * 119.99568 * 359.97438 * 7 6 4 9 9 C 1.38944 * 119.99899 * 180.02562 * 7 6 4 10 10 N 1.31415 * 119.99712 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00471 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47163 * 90.00232 * 11 9 7 13 13 H 1.48493 * 109.47515 * 210.00366 * 11 9 7 14 14 H 1.48506 * 109.47261 * 330.00676 * 11 9 7 15 15 C 1.53044 * 109.45824 * 56.16298 * 3 2 1 16 16 C 1.53195 * 109.31274 * 58.65646 * 15 3 2 17 17 N 1.46921 * 108.77563 * 54.63238 * 16 15 3 18 18 C 1.34777 * 120.62747 * 126.36574 * 17 16 15 19 19 O 1.21513 * 120.00527 * 0.02562 * 18 17 16 20 20 O 1.34641 * 120.00077 * 179.97438 * 18 17 16 21 21 C 1.45198 * 117.00063 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.47384 * 60.00342 * 21 20 18 23 23 C 1.53001 * 109.47262 * 299.99989 * 21 20 18 24 24 C 1.53003 * 109.46922 * 179.97438 * 21 20 18 25 25 C 1.46921 * 118.74226 * 306.64420 * 17 16 15 26 26 C 1.52766 * 109.00794 * 53.31217 * 25 17 16 27 27 H 1.08997 * 109.46983 * 184.04558 * 1 2 3 28 28 H 1.09001 * 109.47354 * 304.04984 * 1 2 3 29 29 H 1.09004 * 109.47169 * 64.04254 * 1 2 3 30 30 H 0.96996 * 120.00697 * 355.21203 * 6 4 3 31 31 H 0.97003 * 119.99974 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.49853 * 298.70328 * 15 3 2 33 33 H 1.09008 * 109.52479 * 178.62055 * 15 3 2 34 34 H 1.09003 * 109.58397 * 294.84545 * 16 15 3 35 35 H 1.08995 * 109.58316 * 174.42225 * 16 15 3 36 36 H 1.09004 * 109.46912 * 300.00198 * 22 21 20 37 37 H 1.09005 * 109.46864 * 59.99383 * 22 21 20 38 38 H 1.08994 * 109.47149 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.46998 * 179.97438 * 23 21 20 40 40 H 1.08995 * 109.47169 * 300.00332 * 23 21 20 41 41 H 1.08997 * 109.46910 * 60.00347 * 23 21 20 42 42 H 1.08994 * 109.47485 * 300.00120 * 24 21 20 43 43 H 1.09004 * 109.47272 * 60.00468 * 24 21 20 44 44 H 1.09006 * 109.47013 * 179.97438 * 24 21 20 45 45 H 1.08995 * 109.58892 * 173.14036 * 25 17 16 46 46 H 1.08999 * 109.58584 * 293.56777 * 25 17 16 47 47 H 1.09000 * 109.56269 * 185.55937 * 26 25 17 48 48 H 1.08992 * 109.39130 * 65.51293 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6412 2.0191 -1.2750 5 8 1.4245 3.2124 -1.2613 6 7 1.5520 1.3312 -2.4306 7 6 1.1215 1.9593 -3.5707 8 1 0.8534 3.0052 -3.5427 9 6 1.0290 1.2500 -4.7619 10 7 0.6159 1.8519 -5.8546 11 14 1.4919 -0.5590 -4.8102 12 1 0.2936 -1.3847 -4.5144 13 1 2.0085 -0.9020 -6.1595 14 1 2.5417 -0.8287 -3.7950 15 6 1.4835 2.0980 1.1986 16 6 1.8302 1.3522 2.4911 17 7 3.2782 1.1049 2.5204 18 6 4.0194 1.4907 3.5778 19 8 3.4910 2.0485 4.5192 20 8 5.3453 1.2572 3.5916 21 6 6.0804 1.6996 4.7631 22 6 5.5270 1.0006 6.0065 23 6 5.9280 3.2140 4.9190 24 6 7.5607 1.3496 4.5984 25 6 3.9038 0.4345 1.3724 26 6 3.5330 1.1857 0.0949 27 1 -0.3633 -1.0251 0.0725 28 1 -0.3634 0.5754 0.8515 29 1 -0.3634 0.4498 -0.9240 30 1 1.7924 0.3919 -2.4557 31 1 0.5517 1.3569 -6.6863 32 1 0.4016 2.2031 1.1183 33 1 1.9448 3.0856 1.2135 34 1 1.2966 0.4022 2.5191 35 1 1.5457 1.9590 3.3506 36 1 4.4722 1.2494 6.1240 37 1 5.6355 -0.0784 5.8953 38 1 6.0791 1.3323 6.8858 39 1 6.4794 3.5459 5.7986 40 1 6.3223 3.7119 4.0332 41 1 4.8734 3.4628 5.0366 42 1 7.6690 0.2708 4.4876 43 1 7.9554 1.8473 3.7125 44 1 8.1127 1.6821 5.4776 45 1 4.9869 0.4360 1.4941 46 1 3.5427 -0.5919 1.3074 47 1 3.9097 0.6413 -0.7710 48 1 3.9754 2.1815 0.1193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371490038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:40 Heat of formation + Delta-G solvation = -177.295639 kcal Electronic energy + Delta-G solvation = -30337.803408 eV Core-core repulsion = 26199.546079 eV Total energy + Delta-G solvation = -4138.257329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15320 -41.36148 -39.26739 -38.18751 -36.97676 -36.13371 -34.99320 -33.79782 -33.00496 -32.30658 -28.32015 -28.27358 -28.22783 -27.50375 -26.13810 -24.48456 -23.46613 -21.87107 -21.08844 -20.47990 -20.15186 -19.05884 -18.29392 -17.68469 -17.31190 -17.11180 -16.68445 -16.53660 -16.27537 -15.81472 -15.57082 -15.32770 -15.20841 -14.91985 -14.83045 -14.51049 -14.40598 -14.30720 -13.94649 -13.56922 -13.43336 -13.23941 -13.04789 -13.02009 -12.86564 -12.81541 -12.64568 -12.45886 -12.44941 -12.35735 -12.27667 -12.16008 -11.99230 -11.86036 -11.58311 -11.34539 -11.14746 -10.94906 -10.32110 -10.21493 -9.75838 -8.47593 -6.08345 1.12776 1.28337 1.30750 1.41722 1.74131 1.77017 2.18279 2.51124 2.74797 2.90409 3.07583 3.52940 3.68513 3.80151 3.84689 3.92439 3.94205 3.99751 4.19016 4.24433 4.40333 4.43050 4.50821 4.59002 4.59770 4.65852 4.69265 4.69609 4.74369 4.81226 4.84832 4.86614 4.92249 4.92711 5.03861 5.14212 5.16138 5.32747 5.35272 5.43812 5.45247 5.50608 5.85658 5.96073 6.31527 6.51590 6.79404 7.27296 7.30906 7.82885 8.69284 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.003091 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.658641 B = 9055.752723 C = 9262.799750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.366 6.366 3 C 0.123 3.877 4 C 0.428 3.572 5 O -0.621 6.621 6 N -0.571 5.571 7 C -0.331 4.331 8 H 0.058 0.942 9 C -0.006 4.006 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.253 1.253 13 H -0.271 1.271 14 H -0.236 1.236 15 C -0.137 4.137 16 C 0.144 3.856 17 N -0.593 5.593 18 C 0.651 3.349 19 O -0.593 6.593 20 O -0.364 6.364 21 C 0.123 3.877 22 C -0.177 4.177 23 C -0.181 4.181 24 C -0.135 4.135 25 C 0.128 3.872 26 C -0.117 4.117 27 H 0.121 0.879 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.391 0.609 31 H 0.281 0.719 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 -10.205 21.934 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.285 6.285 3 C 0.080 3.920 4 C 0.215 3.785 5 O -0.507 6.507 6 N -0.210 5.210 7 C -0.460 4.460 8 H 0.076 0.924 9 C -0.206 4.206 10 N -0.565 5.565 11 Si 0.775 3.225 12 H -0.177 1.177 13 H -0.195 1.195 14 H -0.159 1.159 15 C -0.176 4.176 16 C 0.022 3.978 17 N -0.333 5.333 18 C 0.406 3.594 19 O -0.484 6.484 20 O -0.279 6.279 21 C 0.087 3.913 22 C -0.234 4.234 23 C -0.238 4.238 24 C -0.192 4.192 25 C 0.006 3.994 26 C -0.156 4.156 27 H 0.139 0.861 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.227 0.773 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.314 -9.424 22.045 26.510 hybrid contribution -0.535 0.123 -1.012 1.152 sum 10.779 -9.300 21.032 25.398 Atomic orbital electron populations 1.23100 0.80088 1.04756 1.00464 1.87882 1.20930 1.24922 1.94726 1.21480 0.96135 0.83713 0.90707 1.21350 0.83032 0.87775 0.86356 1.90547 1.56015 1.17217 1.86926 1.42058 1.59012 1.12045 1.07888 1.19035 1.43034 0.96771 0.87180 0.92422 1.26052 0.96166 1.04660 0.93728 1.69789 1.46154 1.39580 1.00996 0.85501 0.80443 0.76955 0.79643 1.17710 1.19546 1.15902 1.22201 1.02548 0.99369 0.93515 1.21537 0.77822 1.01440 0.96960 1.47064 1.08103 1.60741 1.17411 1.18080 0.81248 0.77427 0.82613 1.90867 1.73221 1.47812 1.36494 1.86304 1.18391 1.76795 1.46398 1.22424 0.92055 0.94494 0.82314 1.22452 1.02980 1.00759 0.97243 1.22479 1.03699 0.94408 1.03226 1.21878 0.89868 1.03275 1.04184 1.21632 0.99434 0.96455 0.81885 1.21870 0.90481 1.02690 1.00520 0.86132 0.91933 0.96006 0.77349 0.90899 0.89634 0.91540 0.88527 0.88671 0.91987 0.91732 0.89160 0.89016 0.92479 0.92121 0.90897 0.91514 0.88006 0.87341 0.88378 0.88476 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 10.12 113.37 1.15 1.45 16 2 O -0.37 -10.31 8.50 -148.98 -1.27 -11.57 16 3 C 0.12 4.00 0.62 -11.51 -0.01 3.99 16 4 C 0.43 19.50 5.58 87.66 0.49 19.99 16 5 O -0.62 -34.43 15.70 -3.04 -0.05 -34.48 16 6 N -0.57 -27.20 4.53 -306.99 -1.39 -28.59 16 7 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 8 H 0.06 3.98 7.40 -2.91 -0.02 3.96 16 9 C -0.01 -0.33 5.50 84.92 0.47 0.13 16 10 N -0.93 -54.90 13.96 21.66 0.30 -54.60 16 11 Si 0.95 38.62 27.74 68.60 1.90 40.52 16 12 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 13 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 14 H -0.24 -8.31 6.52 99.48 0.65 -7.66 16 15 C -0.14 -4.15 3.86 30.67 0.12 -4.03 16 16 C 0.14 3.49 6.16 86.36 0.53 4.02 16 17 N -0.59 -14.64 2.98 -950.10 -2.83 -17.47 16 18 C 0.65 17.36 7.74 129.79 1.00 18.36 16 19 O -0.59 -18.04 11.29 19.80 0.22 -17.81 16 20 O -0.36 -8.39 8.53 -55.50 -0.47 -8.86 16 21 C 0.12 2.25 1.13 -10.79 -0.01 2.24 16 22 C -0.18 -3.03 8.37 71.98 0.60 -2.43 16 23 C -0.18 -3.47 8.37 71.98 0.60 -2.87 16 24 C -0.14 -1.60 8.85 71.98 0.64 -0.96 16 25 C 0.13 2.75 6.18 86.22 0.53 3.29 16 26 C -0.12 -3.22 5.08 30.53 0.16 -3.07 16 27 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 1.42 5.98 -2.39 -0.01 1.41 16 29 H 0.02 0.71 7.08 -2.38 -0.02 0.69 16 30 H 0.39 16.21 5.31 -92.71 -0.49 15.72 16 31 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.09 2.57 6.48 -2.39 -0.02 2.55 16 33 H 0.07 2.32 7.93 -2.38 -0.02 2.30 16 34 H 0.10 1.98 7.51 -2.39 -0.02 1.97 16 35 H 0.09 2.39 7.00 -2.39 -0.02 2.37 16 36 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.11 2.04 6.93 -2.39 -0.02 2.02 16 46 H 0.10 1.85 7.81 -2.39 -0.02 1.83 16 47 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.74 372.58 3.96 -71.78 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: 0.42 Total: 39.34 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 7.12 Total: 21.75 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -3.92 Total: -100.65 kcal Atomic # 8 Polarization: -71.17 SS G_CDS: -1.56 Total: -72.73 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -75.74 3.96 -71.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371490038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.516 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds