Wall clock time and date at job start Tue Mar 31 2020 15:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00413 * 2 1 4 4 C 1.50704 * 119.99827 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47237 * 94.26157 * 4 2 1 6 6 C 1.37676 * 127.14487 * 264.65095 * 5 4 2 7 7 C 1.47696 * 126.47033 * 0.02758 * 6 5 4 8 8 N 1.32813 * 119.24846 * 359.71905 * 7 6 5 9 9 C 1.32143 * 120.72347 * 179.75889 * 8 7 6 10 10 C 1.38731 * 119.21850 * 0.51503 * 9 8 7 11 11 C 1.38725 * 118.60684 * 359.74601 * 10 9 8 12 12 N 1.32148 * 119.22367 * 359.97438 * 11 10 9 13 13 N 1.31313 * 107.05988 * 179.97438 * 6 5 4 14 14 N 1.28523 * 109.89328 * 0.02562 * 13 6 5 15 15 C 1.31591 * 110.05670 * 359.72139 * 14 13 6 16 16 N 1.38184 * 126.36236 * 180.28215 * 15 14 13 17 17 C 1.46899 * 110.99722 * 253.39664 * 16 15 14 18 18 C 1.46898 * 110.99873 * 17.34973 * 16 15 14 19 19 H 1.09004 * 109.46894 * 55.00272 * 18 16 15 20 20 C 1.52999 * 109.47263 * 295.00344 * 18 16 15 21 21 C 1.50700 * 109.46766 * 175.00119 * 18 16 15 22 22 H 1.07995 * 120.00241 * 0.02562 * 21 18 16 23 23 C 1.37879 * 119.99403 * 180.02562 * 21 18 16 24 24 N 1.31507 * 120.00491 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99591 * 180.02562 * 23 21 18 26 26 H 1.48506 * 109.47291 * 60.00030 * 25 23 21 27 27 H 1.48498 * 109.47074 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47220 * 299.99994 * 25 23 21 29 29 H 1.07998 * 120.00415 * 184.83648 * 1 2 3 30 30 H 1.08003 * 119.99356 * 4.83400 * 1 2 3 31 31 H 1.08997 * 109.47373 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47290 * 299.99751 * 3 2 1 33 33 H 1.09000 * 109.47459 * 60.00170 * 3 2 1 34 34 H 1.09001 * 109.47388 * 214.26332 * 4 2 1 35 35 H 1.09011 * 109.47026 * 334.26243 * 4 2 1 36 36 H 1.07999 * 120.38939 * 180.27689 * 9 8 7 37 37 H 1.08005 * 120.69501 * 179.76772 * 10 9 8 38 38 H 1.08002 * 120.38792 * 180.02562 * 11 10 9 39 39 H 1.09006 * 109.47009 * 53.85782 * 17 16 15 40 40 H 1.09001 * 109.47247 * 173.85138 * 17 16 15 41 41 H 1.08995 * 109.47816 * 293.85546 * 17 16 15 42 42 H 1.08995 * 109.47274 * 299.99742 * 20 18 16 43 43 H 1.09003 * 109.47185 * 60.00004 * 20 18 16 44 44 H 1.08998 * 109.46699 * 179.97438 * 20 18 16 45 45 H 0.97002 * 120.00489 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.3965 -1.6774 -1.3766 6 6 1.6879 -2.5182 -2.2050 7 6 0.4339 -3.2249 -1.8741 8 7 -0.0996 -3.0695 -0.6678 9 6 -1.2232 -3.6841 -0.3423 10 6 -1.8394 -4.5070 -1.2738 11 6 -1.2533 -4.6518 -2.5228 12 7 -0.1317 -4.0052 -2.7881 13 7 2.3368 -2.5724 -3.3453 14 7 3.3872 -1.8342 -3.2863 15 6 3.4688 -1.2590 -2.1055 16 7 4.4596 -0.3938 -1.6824 17 6 5.3589 -1.0512 -0.7248 18 6 5.2100 0.1460 -2.8241 19 1 4.5181 0.6109 -3.5265 20 6 5.9608 -0.9890 -3.5234 21 6 6.1967 1.1749 -2.3354 22 1 6.2603 1.4045 -1.2821 23 6 7.0182 1.8230 -3.2332 24 7 6.9404 1.5438 -4.5160 25 14 8.2418 3.0979 -2.6274 26 1 9.1848 2.4639 -1.6713 27 1 9.0003 3.6437 -3.7816 28 1 7.5136 4.1992 -1.9478 29 1 -0.5401 -0.9319 0.0789 30 1 -0.5399 0.9321 -0.0788 31 1 3.1352 1.1058 0.0005 32 1 1.8003 1.8766 -0.8900 33 1 1.8004 1.8766 0.8900 34 1 2.9807 -1.1950 0.5791 35 1 1.4434 -2.0825 0.4472 36 1 -1.6547 -3.5504 0.6387 37 1 -2.7564 -5.0238 -1.0318 38 1 -1.7086 -5.2850 -3.2699 39 1 5.7429 -1.9734 -1.1611 40 1 6.1903 -0.3860 -0.4915 41 1 4.8110 -1.2822 0.1887 42 1 6.6527 -1.4538 -2.8211 43 1 5.2471 -1.7332 -3.8769 44 1 6.5172 -0.5885 -4.3708 45 1 7.5181 2.0000 -5.1476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417492002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:25 Heat of formation + Delta-G solvation = 185.496443 kcal Electronic energy + Delta-G solvation = -28776.553741 eV Core-core repulsion = 25025.922679 eV Total energy + Delta-G solvation = -3750.631061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56430 -41.02198 -37.36768 -36.63765 -34.02232 -33.33723 -33.07825 -32.34332 -29.36693 -28.69876 -27.30552 -26.85990 -25.52623 -25.16395 -24.86685 -24.36575 -21.66331 -21.23293 -19.73709 -18.65706 -17.61737 -17.48139 -16.63573 -16.14731 -16.03808 -15.65858 -15.34641 -14.85472 -14.58878 -14.56562 -14.29708 -13.93909 -13.77025 -13.63498 -13.24502 -12.92706 -12.42691 -12.07456 -11.66669 -11.61871 -11.46090 -11.44225 -11.19323 -11.09167 -10.97031 -10.87618 -10.75683 -10.49551 -10.34560 -10.18446 -10.06592 -9.81769 -9.69578 -9.41699 -9.09500 -8.82131 -8.72653 -8.39256 -7.49380 -6.02451 -4.10129 0.31986 0.83009 1.89280 2.22101 2.71839 3.17171 3.30490 3.35973 3.36845 3.46187 3.75524 3.91731 4.28688 4.34179 4.61266 4.64202 4.74972 4.80768 4.86839 4.92288 5.27541 5.29425 5.34420 5.47332 5.64430 5.73394 5.76916 5.93374 5.98244 6.03546 6.05917 6.11573 6.24279 6.39134 6.46182 6.63551 6.65351 6.78558 6.93212 6.96823 7.15352 7.33955 7.47260 7.65791 7.73623 7.77883 7.96414 8.32001 8.45390 8.90454 9.18873 9.54238 11.03580 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.003586 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.271101 B = 7806.402586 C = 8673.951428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.133 4.133 3 C -0.121 4.121 4 C 0.143 3.857 5 N -0.454 5.454 6 C 0.178 3.822 7 C 0.422 3.578 8 N -0.517 5.517 9 C 0.153 3.847 10 C -0.236 4.236 11 C 0.158 3.842 12 N -0.482 5.482 13 N -0.221 5.221 14 N -0.308 5.308 15 C 0.406 3.594 16 N -0.453 5.453 17 C 0.034 3.966 18 C 0.229 3.771 19 H 0.048 0.952 20 C -0.182 4.182 21 C -0.514 4.514 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.883 5.883 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.174 0.826 39 H 0.034 0.966 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.021 0.979 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.001 -9.905 12.243 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 C -0.178 4.178 4 C 0.021 3.979 5 N -0.149 5.149 6 C -0.086 4.086 7 C 0.156 3.844 8 N -0.233 5.233 9 C -0.013 4.013 10 C -0.259 4.259 11 C -0.009 4.009 12 N -0.197 5.197 13 N -0.066 5.066 14 N -0.156 5.156 15 C 0.051 3.949 16 N -0.177 5.177 17 C -0.113 4.113 18 C 0.125 3.875 19 H 0.066 0.934 20 C -0.241 4.241 21 C -0.553 4.553 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.521 5.521 25 Si 0.727 3.273 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.190 0.810 37 H 0.168 0.832 38 H 0.191 0.809 39 H 0.053 0.947 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.888 -9.338 10.704 21.312 hybrid contribution -0.258 0.153 1.425 1.456 sum -16.147 -9.184 12.129 22.185 Atomic orbital electron populations 1.23896 0.95444 1.02056 1.00018 1.21880 0.95399 0.95447 1.00696 1.20891 1.01953 0.93631 1.01339 1.21081 1.01327 0.96324 0.79168 1.46166 1.18878 1.36091 1.13766 1.20923 0.96453 1.01353 0.89864 1.19205 0.90202 0.89843 0.85147 1.68309 1.12305 1.23773 1.18913 1.23194 0.89201 0.89311 0.99597 1.22972 1.03632 1.02793 0.96486 1.23343 0.89283 0.93023 0.95272 1.68424 1.10233 1.07101 1.33906 1.74469 1.01369 1.14546 1.16197 1.75176 1.12915 1.10545 1.16935 1.23225 0.90456 0.93086 0.88145 1.59251 1.12456 1.26355 1.19678 1.22394 0.96686 0.98789 0.93393 1.19393 0.91431 0.92220 0.84425 0.93398 1.22602 1.00514 0.98628 1.02348 1.20965 1.18961 1.21289 0.94087 0.91803 1.24882 0.97191 0.96932 0.94796 1.69910 1.39054 1.41801 1.01333 0.86555 0.81033 0.81610 0.78134 1.20294 1.21312 1.20232 0.87648 0.88576 0.89861 0.91687 0.92052 0.88734 0.86521 0.81043 0.83240 0.80890 0.94720 0.88159 0.93452 0.96029 0.92624 0.89348 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 13.92 29.01 0.40 -1.76 16 2 C -0.13 -1.84 5.64 -101.07 -0.57 -2.41 16 3 C -0.12 -1.75 10.05 36.00 0.36 -1.39 16 4 C 0.14 2.02 5.82 -5.19 -0.03 1.99 16 5 N -0.45 -8.15 2.81 -116.05 -0.33 -8.48 16 6 C 0.18 3.35 7.92 -153.69 -1.22 2.13 16 7 C 0.42 6.47 7.58 -156.84 -1.19 5.28 16 8 N -0.52 -6.16 5.89 -11.23 -0.07 -6.22 16 9 C 0.15 1.19 11.30 -17.24 -0.19 1.00 16 10 C -0.24 -1.55 10.17 -39.22 -0.40 -1.95 16 11 C 0.16 1.44 11.30 -17.24 -0.19 1.24 16 12 N -0.48 -6.93 10.34 -11.23 -0.12 -7.04 16 13 N -0.22 -4.86 12.19 32.58 0.40 -4.46 16 14 N -0.31 -7.21 8.88 30.26 0.27 -6.94 16 15 C 0.41 8.56 6.62 -319.28 -2.11 6.45 16 16 N -0.45 -9.61 4.19 -176.17 -0.74 -10.35 16 17 C 0.03 0.63 8.59 60.06 0.52 1.15 16 18 C 0.23 5.80 2.10 -68.87 -0.14 5.65 16 19 H 0.05 1.39 8.11 -51.93 -0.42 0.97 16 20 C -0.18 -4.61 8.28 37.16 0.31 -4.30 16 21 C -0.51 -13.49 7.80 -34.44 -0.27 -13.76 16 22 H 0.06 1.61 6.82 -52.49 -0.36 1.25 16 23 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 24 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 25 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.11 1.21 6.06 -52.49 -0.32 0.89 16 30 H 0.10 1.09 8.05 -52.48 -0.42 0.67 16 31 H 0.08 1.34 7.41 -51.93 -0.38 0.95 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.26 6.11 -51.93 -0.32 0.94 16 35 H 0.12 1.47 5.78 -51.92 -0.30 1.17 16 36 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 38 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.03 0.65 6.83 -51.93 -0.35 0.30 16 40 H 0.10 1.89 6.28 -51.93 -0.33 1.57 16 41 H 0.05 0.72 6.19 -51.93 -0.32 0.39 16 42 H 0.02 0.51 6.62 -51.93 -0.34 0.16 16 43 H 0.06 1.41 5.30 -51.93 -0.28 1.13 16 44 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -32.73 363.27 -10.03 -42.76 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.71 Total: 3.00 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -4.83 Total: 0.98 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: 0.05 Total: -67.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.73 -10.03 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417492002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.260 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds