Wall clock time and date at job start Tue Mar 31 2020 15:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00413 * 2 1 4 4 C 1.50704 * 119.99827 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47237 * 94.26157 * 4 2 1 6 6 C 1.37676 * 127.14487 * 264.65095 * 5 4 2 7 7 C 1.47696 * 126.47033 * 0.02758 * 6 5 4 8 8 N 1.32813 * 119.24846 * 359.71905 * 7 6 5 9 9 C 1.32143 * 120.72347 * 179.75889 * 8 7 6 10 10 C 1.38731 * 119.21850 * 0.51503 * 9 8 7 11 11 C 1.38725 * 118.60684 * 359.74601 * 10 9 8 12 12 N 1.32148 * 119.22367 * 359.97438 * 11 10 9 13 13 N 1.31313 * 107.05988 * 179.97438 * 6 5 4 14 14 N 1.28523 * 109.89328 * 0.02562 * 13 6 5 15 15 C 1.31591 * 110.05670 * 359.72139 * 14 13 6 16 16 N 1.38184 * 126.36236 * 180.28215 * 15 14 13 17 17 C 1.46899 * 110.99722 * 253.39664 * 16 15 14 18 18 C 1.46898 * 110.99873 * 17.34973 * 16 15 14 19 19 H 1.09004 * 109.46894 * 55.00272 * 18 16 15 20 20 C 1.52999 * 109.47263 * 295.00344 * 18 16 15 21 21 C 1.50700 * 109.46766 * 175.00119 * 18 16 15 22 22 H 1.07995 * 120.00241 * 0.02562 * 21 18 16 23 23 C 1.37879 * 119.99403 * 180.02562 * 21 18 16 24 24 N 1.31507 * 120.00491 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99591 * 180.02562 * 23 21 18 26 26 H 1.48506 * 109.47291 * 60.00030 * 25 23 21 27 27 H 1.48498 * 109.47074 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47220 * 299.99994 * 25 23 21 29 29 H 1.07998 * 120.00415 * 184.83648 * 1 2 3 30 30 H 1.08003 * 119.99356 * 4.83400 * 1 2 3 31 31 H 1.08997 * 109.47373 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47290 * 299.99751 * 3 2 1 33 33 H 1.09000 * 109.47459 * 60.00170 * 3 2 1 34 34 H 1.09001 * 109.47388 * 214.26332 * 4 2 1 35 35 H 1.09011 * 109.47026 * 334.26243 * 4 2 1 36 36 H 1.07999 * 120.38939 * 180.27689 * 9 8 7 37 37 H 1.08005 * 120.69501 * 179.76772 * 10 9 8 38 38 H 1.08002 * 120.38792 * 180.02562 * 11 10 9 39 39 H 1.09006 * 109.47009 * 53.85782 * 17 16 15 40 40 H 1.09001 * 109.47247 * 173.85138 * 17 16 15 41 41 H 1.08995 * 109.47816 * 293.85546 * 17 16 15 42 42 H 1.08995 * 109.47274 * 299.99742 * 20 18 16 43 43 H 1.09003 * 109.47185 * 60.00004 * 20 18 16 44 44 H 1.08998 * 109.46699 * 179.97438 * 20 18 16 45 45 H 0.97002 * 120.00489 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.3965 -1.6774 -1.3766 6 6 1.6879 -2.5182 -2.2050 7 6 0.4339 -3.2249 -1.8741 8 7 -0.0996 -3.0695 -0.6678 9 6 -1.2232 -3.6841 -0.3423 10 6 -1.8394 -4.5070 -1.2738 11 6 -1.2533 -4.6518 -2.5228 12 7 -0.1317 -4.0052 -2.7881 13 7 2.3368 -2.5724 -3.3453 14 7 3.3872 -1.8342 -3.2863 15 6 3.4688 -1.2590 -2.1055 16 7 4.4596 -0.3938 -1.6824 17 6 5.3589 -1.0512 -0.7248 18 6 5.2100 0.1460 -2.8241 19 1 4.5181 0.6109 -3.5265 20 6 5.9608 -0.9890 -3.5234 21 6 6.1967 1.1749 -2.3354 22 1 6.2603 1.4045 -1.2821 23 6 7.0182 1.8230 -3.2332 24 7 6.9404 1.5438 -4.5160 25 14 8.2418 3.0979 -2.6274 26 1 9.1848 2.4639 -1.6713 27 1 9.0003 3.6437 -3.7816 28 1 7.5136 4.1992 -1.9478 29 1 -0.5401 -0.9319 0.0789 30 1 -0.5399 0.9321 -0.0788 31 1 3.1352 1.1058 0.0005 32 1 1.8003 1.8766 -0.8900 33 1 1.8004 1.8766 0.8900 34 1 2.9807 -1.1950 0.5791 35 1 1.4434 -2.0825 0.4472 36 1 -1.6547 -3.5504 0.6387 37 1 -2.7564 -5.0238 -1.0318 38 1 -1.7086 -5.2850 -3.2699 39 1 5.7429 -1.9734 -1.1611 40 1 6.1903 -0.3860 -0.4915 41 1 4.8110 -1.2822 0.1887 42 1 6.6527 -1.4538 -2.8211 43 1 5.2471 -1.7332 -3.8769 44 1 6.5172 -0.5885 -4.3708 45 1 7.5181 2.0000 -5.1476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417492002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:23 Heat of formation + Delta-G solvation = 167.098171 kcal Electronic energy + Delta-G solvation = -28777.351550 eV Core-core repulsion = 25025.922679 eV Total energy + Delta-G solvation = -3751.428870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.02946 -41.85630 -39.10254 -37.82708 -34.94750 -34.84896 -34.49611 -33.51392 -30.95423 -30.42108 -28.51924 -28.00068 -27.27451 -26.86462 -25.80704 -25.38806 -23.36268 -22.48750 -21.34469 -19.84185 -18.63274 -18.39049 -18.35552 -17.55296 -17.37262 -17.06129 -16.52132 -16.40970 -15.79197 -15.70367 -15.45150 -15.11733 -15.05975 -14.90206 -14.40830 -14.31184 -14.07372 -13.47869 -13.30496 -13.16798 -12.91509 -12.79720 -12.65714 -12.56950 -12.46385 -12.29551 -12.09044 -12.01303 -11.94222 -11.73295 -11.60720 -11.30035 -11.02317 -10.81359 -10.47569 -10.27443 -10.15148 -10.11390 -9.12956 -8.09255 -6.24402 -0.58724 0.15558 0.70275 0.93101 1.45929 1.48942 1.52444 1.56987 1.73060 2.37015 2.46898 2.82807 3.04036 3.10510 3.20436 3.66556 3.70851 3.77792 3.79699 3.98754 4.14951 4.21548 4.26610 4.38774 4.47945 4.53919 4.63300 4.67940 4.72394 4.83497 4.89419 4.94096 4.99268 5.00979 5.14534 5.22779 5.28467 5.34161 5.37198 5.58661 5.62681 5.65545 5.78870 5.87574 5.97262 6.03870 6.24214 6.56534 6.84398 6.94144 7.44109 7.65886 8.97114 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.003586 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.271101 B = 7806.402586 C = 8673.951428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C -0.116 4.116 4 C 0.141 3.859 5 N -0.445 5.445 6 C 0.201 3.799 7 C 0.383 3.617 8 N -0.518 5.518 9 C 0.146 3.854 10 C -0.194 4.194 11 C 0.139 3.861 12 N -0.521 5.521 13 N -0.273 5.273 14 N -0.354 5.354 15 C 0.387 3.613 16 N -0.447 5.447 17 C 0.036 3.964 18 C 0.243 3.757 19 H -0.003 1.003 20 C -0.165 4.165 21 C -0.521 4.521 22 H 0.075 0.925 23 C 0.013 3.987 24 N -0.920 5.920 25 Si 0.968 3.032 26 H -0.265 1.265 27 H -0.290 1.290 28 H -0.269 1.269 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.220 0.780 37 H 0.201 0.799 38 H 0.204 0.796 39 H 0.024 0.976 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.028 0.972 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.005 -10.898 15.906 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.172 4.172 4 C 0.021 3.979 5 N -0.139 5.139 6 C -0.066 4.066 7 C 0.116 3.884 8 N -0.235 5.235 9 C -0.019 4.019 10 C -0.216 4.216 11 C -0.026 4.026 12 N -0.237 5.237 13 N -0.116 5.116 14 N -0.201 5.201 15 C 0.030 3.970 16 N -0.171 5.171 17 C -0.110 4.110 18 C 0.137 3.863 19 H 0.015 0.985 20 C -0.224 4.224 21 C -0.559 4.559 22 H 0.093 0.907 23 C -0.187 4.187 24 N -0.559 5.559 25 Si 0.793 3.207 26 H -0.189 1.189 27 H -0.216 1.216 28 H -0.194 1.194 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.155 0.845 36 H 0.236 0.764 37 H 0.218 0.782 38 H 0.221 0.779 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.925 -10.357 14.394 25.935 hybrid contribution 0.293 0.266 0.373 0.544 sum -18.632 -10.091 14.768 25.827 Atomic orbital electron populations 1.24098 0.94846 1.03181 0.97113 1.21823 0.95989 0.94766 1.03128 1.20809 1.00787 0.94288 1.01360 1.21371 1.02194 0.97200 0.77173 1.46326 1.17610 1.35229 1.14723 1.21687 0.96689 0.99493 0.88695 1.18779 0.90242 0.92244 0.87119 1.68224 1.13810 1.24322 1.17135 1.24101 0.87738 0.88433 1.01656 1.23540 1.03786 0.99984 0.94299 1.24019 0.88089 0.92912 0.97571 1.68286 1.12489 1.07925 1.34963 1.74338 1.02336 1.16359 1.18603 1.74965 1.14476 1.11939 1.18701 1.23080 0.91403 0.93992 0.88499 1.59138 1.12454 1.27253 1.18255 1.22464 0.96704 0.97851 0.94001 1.18941 0.90352 0.91996 0.84966 0.98487 1.22399 1.00096 0.98579 1.01372 1.21269 1.18779 1.21272 0.94597 0.90703 1.25776 0.99129 0.98983 0.94794 1.70087 1.40061 1.43051 1.02673 0.85457 0.78646 0.78998 0.77579 1.18947 1.21596 1.19433 0.86307 0.87512 0.91869 0.94043 0.89639 0.88009 0.84514 0.76407 0.78187 0.77905 0.95761 0.88547 0.89764 0.95304 0.93038 0.92203 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 13.92 67.78 0.94 -2.45 16 2 C -0.16 -4.09 5.64 -16.49 -0.09 -4.19 16 3 C -0.12 -3.29 10.05 71.23 0.72 -2.58 16 4 C 0.14 3.80 5.82 85.63 0.50 4.30 16 5 N -0.45 -16.25 2.81 -521.07 -1.46 -17.71 16 6 C 0.20 7.78 7.92 136.12 1.08 8.86 16 7 C 0.38 11.41 7.58 137.22 1.04 12.46 16 8 N -0.52 -10.76 5.89 -189.45 -1.12 -11.88 16 9 C 0.15 1.49 11.30 84.76 0.96 2.45 16 10 C -0.19 -1.45 10.17 22.50 0.23 -1.22 16 11 C 0.14 2.08 11.30 84.76 0.96 3.04 16 12 N -0.52 -14.52 10.34 -189.45 -1.96 -16.48 16 13 N -0.27 -12.81 12.19 -50.82 -0.62 -13.43 16 14 N -0.35 -17.81 8.88 -58.19 -0.52 -18.33 16 15 C 0.39 17.17 6.62 260.25 1.72 18.89 16 16 N -0.45 -19.79 4.19 -711.29 -2.98 -22.77 16 17 C 0.04 1.35 8.59 127.69 1.10 2.44 16 18 C 0.24 13.05 2.10 44.17 0.09 13.14 16 19 H 0.00 -0.18 8.11 -2.38 -0.02 -0.20 16 20 C -0.16 -8.94 8.28 71.98 0.60 -8.34 16 21 C -0.52 -28.16 7.80 25.60 0.20 -27.96 16 22 H 0.07 3.80 6.82 -2.91 -0.02 3.78 16 23 C 0.01 0.69 5.30 84.66 0.45 1.14 16 24 N -0.92 -54.70 11.32 21.45 0.24 -54.46 16 25 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 29 H 0.12 2.27 6.06 -2.91 -0.02 2.26 16 30 H 0.11 2.13 8.05 -2.91 -0.02 2.10 16 31 H 0.06 2.04 7.41 -2.39 -0.02 2.02 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 2.55 6.11 -2.39 -0.01 2.54 16 35 H 0.14 3.11 5.78 -2.38 -0.01 3.10 16 36 H 0.22 0.15 8.06 -2.91 -0.02 0.13 16 37 H 0.20 -0.47 8.06 -2.91 -0.02 -0.49 16 38 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.02 0.93 6.83 -2.38 -0.02 0.92 16 40 H 0.10 3.64 6.28 -2.39 -0.01 3.62 16 41 H 0.08 2.47 6.19 -2.39 -0.01 2.45 16 42 H 0.03 1.45 6.62 -2.39 -0.02 1.43 16 43 H 0.05 2.82 5.30 -2.39 -0.01 2.81 16 44 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 45 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -79.79 363.27 5.13 -74.67 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.03 Total: 15.18 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 10.48 Total: 20.00 kcal Atomic # 7 Polarization: -146.64 SS G_CDS: -8.41 Total: -155.05 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -79.79 5.13 -74.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417492002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.764 kcal (2) G-P(sol) polarization free energy of solvation -79.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds