Wall clock time and date at job start Tue Mar 31 2020 15:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99549 * 2 1 4 4 C 1.50700 * 120.00233 * 179.97438 * 2 1 3 5 5 N 1.46495 * 109.46837 * 94.06403 * 4 2 1 6 6 C 1.37669 * 127.15126 * 265.40761 * 5 4 2 7 7 C 1.47701 * 126.46343 * 359.94985 * 6 5 4 8 8 N 1.32811 * 119.24814 * 359.72438 * 7 6 5 9 9 C 1.32151 * 120.71897 * 179.76249 * 8 7 6 10 10 C 1.38726 * 119.22225 * 0.50094 * 9 8 7 11 11 C 1.38726 * 118.60600 * 359.75443 * 10 9 8 12 12 N 1.32145 * 119.22178 * 359.97438 * 11 10 9 13 13 N 1.31306 * 107.06525 * 180.20902 * 6 5 4 14 14 N 1.28519 * 109.89541 * 359.62218 * 13 6 5 15 15 C 1.31592 * 110.05406 * 0.38979 * 14 13 6 16 16 N 1.38188 * 126.36110 * 179.78290 * 15 14 13 17 17 C 1.46896 * 111.00009 * 255.29232 * 16 15 14 18 18 C 1.46897 * 110.99771 * 19.24975 * 16 15 14 19 19 H 1.09002 * 109.46798 * 299.99685 * 18 16 15 20 20 C 1.52999 * 109.47459 * 59.99544 * 18 16 15 21 21 C 1.50703 * 109.46986 * 180.02562 * 18 16 15 22 22 H 1.07996 * 120.00122 * 359.97438 * 21 18 16 23 23 C 1.37873 * 119.99581 * 180.02562 * 21 18 16 24 24 N 1.31515 * 119.99617 * 179.97438 * 23 21 18 25 25 Si 1.86797 * 120.00488 * 359.97438 * 23 21 18 26 26 H 1.48496 * 109.47152 * 90.00518 * 25 23 21 27 27 H 1.48499 * 109.47177 * 210.00329 * 25 23 21 28 28 H 1.48500 * 109.47166 * 329.99985 * 25 23 21 29 29 H 1.07992 * 120.00471 * 5.55828 * 1 2 3 30 30 H 1.08004 * 119.99425 * 185.55169 * 1 2 3 31 31 H 1.08998 * 109.46546 * 269.99458 * 3 2 1 32 32 H 1.08997 * 109.47221 * 29.99518 * 3 2 1 33 33 H 1.09004 * 109.47059 * 149.99922 * 3 2 1 34 34 H 1.08992 * 109.47215 * 334.06526 * 4 2 1 35 35 H 1.09005 * 109.47058 * 214.06277 * 4 2 1 36 36 H 1.07998 * 120.38468 * 180.25837 * 9 8 7 37 37 H 1.08000 * 120.69332 * 179.77180 * 10 9 8 38 38 H 1.07998 * 120.38627 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.46994 * 66.02729 * 17 16 15 40 40 H 1.09001 * 109.47248 * 186.02725 * 17 16 15 41 41 H 1.09002 * 109.47177 * 306.02367 * 17 16 15 42 42 H 1.08998 * 109.47389 * 300.00039 * 20 18 16 43 43 H 1.09002 * 109.47001 * 60.00264 * 20 18 16 44 44 H 1.09002 * 109.47244 * 180.02562 * 20 18 16 45 45 H 0.97001 * 120.00292 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.3925 -1.6796 -1.3770 6 6 1.6739 -2.5104 -2.2068 7 6 0.4120 -3.2033 -1.8767 8 7 -0.1192 -3.0441 -0.6699 9 6 -1.2497 -3.6465 -0.3451 10 6 -1.8758 -4.4603 -1.2780 11 6 -1.2919 -4.6093 -2.5275 12 7 -0.1631 -3.9752 -2.7919 13 7 2.3252 -2.5752 -3.3452 14 7 3.3818 -1.8458 -3.2866 15 6 3.4729 -1.2776 -2.1032 16 7 4.4776 -0.4303 -1.6764 17 6 5.3925 -1.1198 -0.7570 18 6 5.2073 0.1378 -2.8177 19 1 5.6536 -0.6677 -3.4009 20 6 4.2392 0.9295 -3.6991 21 6 6.2928 1.0539 -2.3142 22 1 6.4270 1.1998 -1.2526 23 6 7.1140 1.7065 -3.2089 24 7 8.0611 2.5063 -2.7695 25 14 6.8816 1.4548 -5.0452 26 1 5.9265 2.4653 -5.5664 27 1 8.1880 1.6065 -5.7349 28 1 6.3459 0.0924 -5.2942 29 1 -0.5400 0.9308 -0.0906 30 1 -0.5399 -0.9310 0.0905 31 1 2.2451 1.6197 -1.0277 32 1 1.4743 2.0648 0.5137 33 1 3.0159 1.1749 0.5139 34 1 1.4449 -2.0816 0.4503 35 1 2.9825 -1.1937 0.5762 36 1 -1.6790 -3.5099 0.6364 37 1 -2.7985 -4.9669 -1.0366 38 1 -1.7550 -5.2355 -3.2757 39 1 5.9253 -1.9040 -1.2948 40 1 6.1093 -0.4046 -0.3534 41 1 4.8219 -1.5624 0.0595 42 1 3.4543 0.2666 -4.0633 43 1 3.7928 1.7350 -3.1159 44 1 4.7806 1.3507 -4.5462 45 1 8.6391 2.9652 -3.3990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417492003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:27 Heat of formation + Delta-G solvation = 188.586180 kcal Electronic energy + Delta-G solvation = -28904.451378 eV Core-core repulsion = 25153.954298 eV Total energy + Delta-G solvation = -3750.497080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70634 -41.09927 -37.42447 -36.70939 -34.09184 -33.44558 -33.11756 -32.38920 -30.26101 -29.37792 -27.40294 -26.90858 -25.71560 -24.99013 -24.66209 -24.35131 -22.00282 -21.29294 -19.79266 -18.76199 -17.69560 -17.51975 -17.00957 -16.50576 -16.23310 -15.74724 -15.24219 -15.07431 -14.77077 -14.61835 -14.29479 -14.05747 -13.83556 -13.74549 -13.33558 -12.94172 -12.72955 -12.24653 -12.10846 -11.77571 -11.74220 -11.54292 -11.34278 -11.18948 -11.08525 -10.97552 -10.76330 -10.67380 -10.48174 -10.26202 -10.15181 -9.85501 -9.52192 -9.48325 -9.33636 -9.12788 -8.75446 -8.60636 -7.68883 -6.13378 -4.14647 0.24047 0.76197 1.81252 2.10317 2.62086 3.02898 3.30892 3.36362 3.41999 3.48912 3.66145 3.83521 4.22633 4.34030 4.39411 4.56370 4.68727 4.74715 4.78951 4.84932 5.19279 5.24208 5.27295 5.34821 5.55045 5.62263 5.69333 5.87396 5.94150 5.96720 5.99505 6.02288 6.13363 6.30454 6.36041 6.44349 6.49544 6.56199 6.60549 6.63703 6.81973 6.88037 6.94021 7.13317 7.42884 7.59216 7.69156 7.86667 8.48592 8.86509 9.01229 9.47281 10.98111 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.003866 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.693043 B = 7241.247505 C = 8023.936911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.134 4.134 3 C -0.114 4.114 4 C 0.143 3.857 5 N -0.451 5.451 6 C 0.183 3.817 7 C 0.420 3.580 8 N -0.516 5.516 9 C 0.154 3.846 10 C -0.234 4.234 11 C 0.158 3.842 12 N -0.482 5.482 13 N -0.218 5.218 14 N -0.319 5.319 15 C 0.403 3.597 16 N -0.446 5.446 17 C 0.041 3.959 18 C 0.199 3.801 19 H 0.026 0.974 20 C -0.148 4.148 21 C -0.516 4.516 22 H 0.086 0.914 23 C 0.079 3.921 24 N -0.894 5.894 25 Si 0.879 3.121 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.260 1.260 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.173 0.827 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.036 0.964 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.439 -11.869 9.025 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.135 4.135 3 C -0.171 4.171 4 C 0.021 3.979 5 N -0.145 5.145 6 C -0.081 4.081 7 C 0.154 3.846 8 N -0.232 5.232 9 C -0.013 4.013 10 C -0.257 4.257 11 C -0.009 4.009 12 N -0.197 5.197 13 N -0.064 5.064 14 N -0.167 5.167 15 C 0.048 3.952 16 N -0.170 5.170 17 C -0.106 4.106 18 C 0.093 3.907 19 H 0.044 0.956 20 C -0.206 4.206 21 C -0.554 4.554 22 H 0.104 0.896 23 C -0.124 4.124 24 N -0.532 5.532 25 Si 0.708 3.292 26 H -0.204 1.204 27 H -0.223 1.223 28 H -0.184 1.184 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.190 0.810 37 H 0.168 0.832 38 H 0.192 0.808 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.240 -11.257 7.647 23.566 hybrid contribution -1.035 -0.504 0.121 1.157 sum -20.275 -11.761 7.768 24.692 Atomic orbital electron populations 1.23922 0.95365 1.02144 0.99912 1.21866 0.95414 0.95418 1.00822 1.20830 0.99982 0.93142 1.03154 1.21074 1.01517 0.96349 0.78912 1.46141 1.17881 1.36596 1.13899 1.20945 0.96047 1.01418 0.89723 1.19171 0.90199 0.90010 0.85236 1.68313 1.12434 1.23542 1.18874 1.23208 0.89100 0.89304 0.99648 1.22987 1.03591 1.02674 0.96421 1.23345 0.89294 0.92953 0.95325 1.68411 1.10064 1.07263 1.33922 1.74432 1.01314 1.14171 1.16439 1.75035 1.13853 1.10798 1.16995 1.23059 0.90647 0.93366 0.88170 1.58800 1.11524 1.26321 1.20389 1.22384 0.95409 0.98558 0.94259 1.19789 0.91167 0.94301 0.85425 0.95609 1.22189 0.99186 1.00068 0.99128 1.20840 1.12655 1.26127 0.95751 0.89634 1.24800 0.94632 0.94339 0.98642 1.69855 1.19355 1.28957 1.35001 0.86969 0.76348 0.79943 0.85895 1.20424 1.22337 1.18427 0.88544 0.87597 0.90910 0.92363 0.90891 0.86465 0.88541 0.80951 0.83163 0.80846 0.94511 0.87821 0.93298 0.94023 0.92766 0.93430 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 13.84 29.01 0.40 -1.65 16 2 C -0.13 -1.77 5.63 -101.06 -0.57 -2.34 16 3 C -0.11 -1.60 10.03 36.01 0.36 -1.24 16 4 C 0.14 1.94 5.88 -5.20 -0.03 1.90 16 5 N -0.45 -7.71 2.81 -116.06 -0.33 -8.04 16 6 C 0.18 3.28 7.92 -153.70 -1.22 2.06 16 7 C 0.42 6.13 7.58 -156.84 -1.19 4.94 16 8 N -0.52 -5.81 5.80 -11.23 -0.07 -5.88 16 9 C 0.15 1.11 11.29 -17.23 -0.19 0.92 16 10 C -0.23 -1.41 10.17 -39.22 -0.40 -1.81 16 11 C 0.16 1.35 11.30 -17.24 -0.19 1.15 16 12 N -0.48 -6.60 10.34 -11.23 -0.12 -6.71 16 13 N -0.22 -4.58 12.19 32.58 0.40 -4.19 16 14 N -0.32 -7.11 9.91 30.26 0.30 -6.81 16 15 C 0.40 8.09 6.05 -319.26 -1.93 6.16 16 16 N -0.45 -9.12 4.64 -176.17 -0.82 -9.94 16 17 C 0.04 0.73 9.08 60.06 0.55 1.28 16 18 C 0.20 4.77 1.31 -68.87 -0.09 4.68 16 19 H 0.03 0.68 6.97 -51.93 -0.36 0.32 16 20 C -0.15 -3.50 8.50 37.16 0.32 -3.19 16 21 C -0.52 -13.77 8.53 -34.44 -0.29 -14.07 16 22 H 0.09 2.39 6.64 -52.49 -0.35 2.04 16 23 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 24 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 25 Si 0.88 22.15 24.37 -169.99 -4.14 18.00 16 26 H -0.28 -6.87 6.87 56.52 0.39 -6.48 16 27 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 29 H 0.10 1.05 8.05 -52.49 -0.42 0.63 16 30 H 0.11 1.15 5.97 -52.48 -0.31 0.84 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.12 1.41 5.82 -51.93 -0.30 1.10 16 35 H 0.10 1.23 6.35 -51.93 -0.33 0.90 16 36 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.94 6.31 -51.93 -0.33 1.61 16 41 H 0.05 0.72 6.41 -51.93 -0.33 0.39 16 42 H 0.04 0.97 6.17 -51.93 -0.32 0.65 16 43 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -33.74 362.07 -8.91 -42.65 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.78 Total: 0.21 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -4.58 Total: 0.91 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: 0.15 Total: -67.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.74 -8.91 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417492003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.232 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds