Wall clock time and date at job start Tue Mar 31 2020 15:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99549 * 2 1 4 4 C 1.50700 * 120.00233 * 179.97438 * 2 1 3 5 5 N 1.46495 * 109.46837 * 94.06403 * 4 2 1 6 6 C 1.37669 * 127.15126 * 265.40761 * 5 4 2 7 7 C 1.47701 * 126.46343 * 359.94985 * 6 5 4 8 8 N 1.32811 * 119.24814 * 359.72438 * 7 6 5 9 9 C 1.32151 * 120.71897 * 179.76249 * 8 7 6 10 10 C 1.38726 * 119.22225 * 0.50094 * 9 8 7 11 11 C 1.38726 * 118.60600 * 359.75443 * 10 9 8 12 12 N 1.32145 * 119.22178 * 359.97438 * 11 10 9 13 13 N 1.31306 * 107.06525 * 180.20902 * 6 5 4 14 14 N 1.28519 * 109.89541 * 359.62218 * 13 6 5 15 15 C 1.31592 * 110.05406 * 0.38979 * 14 13 6 16 16 N 1.38188 * 126.36110 * 179.78290 * 15 14 13 17 17 C 1.46896 * 111.00009 * 255.29232 * 16 15 14 18 18 C 1.46897 * 110.99771 * 19.24975 * 16 15 14 19 19 H 1.09002 * 109.46798 * 299.99685 * 18 16 15 20 20 C 1.52999 * 109.47459 * 59.99544 * 18 16 15 21 21 C 1.50703 * 109.46986 * 180.02562 * 18 16 15 22 22 H 1.07996 * 120.00122 * 359.97438 * 21 18 16 23 23 C 1.37873 * 119.99581 * 180.02562 * 21 18 16 24 24 N 1.31515 * 119.99617 * 179.97438 * 23 21 18 25 25 Si 1.86797 * 120.00488 * 359.97438 * 23 21 18 26 26 H 1.48496 * 109.47152 * 90.00518 * 25 23 21 27 27 H 1.48499 * 109.47177 * 210.00329 * 25 23 21 28 28 H 1.48500 * 109.47166 * 329.99985 * 25 23 21 29 29 H 1.07992 * 120.00471 * 5.55828 * 1 2 3 30 30 H 1.08004 * 119.99425 * 185.55169 * 1 2 3 31 31 H 1.08998 * 109.46546 * 269.99458 * 3 2 1 32 32 H 1.08997 * 109.47221 * 29.99518 * 3 2 1 33 33 H 1.09004 * 109.47059 * 149.99922 * 3 2 1 34 34 H 1.08992 * 109.47215 * 334.06526 * 4 2 1 35 35 H 1.09005 * 109.47058 * 214.06277 * 4 2 1 36 36 H 1.07998 * 120.38468 * 180.25837 * 9 8 7 37 37 H 1.08000 * 120.69332 * 179.77180 * 10 9 8 38 38 H 1.07998 * 120.38627 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.46994 * 66.02729 * 17 16 15 40 40 H 1.09001 * 109.47248 * 186.02725 * 17 16 15 41 41 H 1.09002 * 109.47177 * 306.02367 * 17 16 15 42 42 H 1.08998 * 109.47389 * 300.00039 * 20 18 16 43 43 H 1.09002 * 109.47001 * 60.00264 * 20 18 16 44 44 H 1.09002 * 109.47244 * 180.02562 * 20 18 16 45 45 H 0.97001 * 120.00292 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.3925 -1.6796 -1.3770 6 6 1.6739 -2.5104 -2.2068 7 6 0.4120 -3.2033 -1.8767 8 7 -0.1192 -3.0441 -0.6699 9 6 -1.2497 -3.6465 -0.3451 10 6 -1.8758 -4.4603 -1.2780 11 6 -1.2919 -4.6093 -2.5275 12 7 -0.1631 -3.9752 -2.7919 13 7 2.3252 -2.5752 -3.3452 14 7 3.3818 -1.8458 -3.2866 15 6 3.4729 -1.2776 -2.1032 16 7 4.4776 -0.4303 -1.6764 17 6 5.3925 -1.1198 -0.7570 18 6 5.2073 0.1378 -2.8177 19 1 5.6536 -0.6677 -3.4009 20 6 4.2392 0.9295 -3.6991 21 6 6.2928 1.0539 -2.3142 22 1 6.4270 1.1998 -1.2526 23 6 7.1140 1.7065 -3.2089 24 7 8.0611 2.5063 -2.7695 25 14 6.8816 1.4548 -5.0452 26 1 5.9265 2.4653 -5.5664 27 1 8.1880 1.6065 -5.7349 28 1 6.3459 0.0924 -5.2942 29 1 -0.5400 0.9308 -0.0906 30 1 -0.5399 -0.9310 0.0905 31 1 2.2451 1.6197 -1.0277 32 1 1.4743 2.0648 0.5137 33 1 3.0159 1.1749 0.5139 34 1 1.4449 -2.0816 0.4503 35 1 2.9825 -1.1937 0.5762 36 1 -1.6790 -3.5099 0.6364 37 1 -2.7985 -4.9669 -1.0366 38 1 -1.7550 -5.2355 -3.2757 39 1 5.9253 -1.9040 -1.2948 40 1 6.1093 -0.4046 -0.3534 41 1 4.8219 -1.5624 0.0595 42 1 3.4543 0.2666 -4.0633 43 1 3.7928 1.7350 -3.1159 44 1 4.7806 1.3507 -4.5462 45 1 8.6391 2.9652 -3.3990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417492003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:27 Heat of formation + Delta-G solvation = 167.789780 kcal Electronic energy + Delta-G solvation = -28905.353178 eV Core-core repulsion = 25153.954298 eV Total energy + Delta-G solvation = -3751.398880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.09547 -41.86858 -39.10572 -37.84165 -34.99948 -34.85934 -34.53417 -33.57628 -32.13532 -30.69694 -28.57979 -28.00801 -27.36326 -26.31900 -25.84017 -25.37816 -23.63108 -22.50641 -21.33906 -19.90159 -18.94914 -18.63264 -18.37698 -17.84365 -17.46466 -16.89072 -16.68078 -16.47539 -15.97094 -15.68982 -15.44114 -15.30230 -15.08209 -15.00037 -14.54057 -14.41335 -14.17676 -14.04297 -13.66957 -13.23151 -12.95573 -12.84585 -12.76371 -12.62611 -12.49103 -12.46767 -12.17272 -11.94817 -11.83835 -11.80893 -11.53269 -11.40973 -11.18024 -11.04656 -10.77687 -10.29726 -10.18540 -10.13122 -9.24518 -8.32859 -6.35735 -0.60732 0.14437 0.66889 0.87414 1.27224 1.35109 1.45598 1.49117 1.66159 2.28707 2.34636 2.81343 2.86540 3.03065 3.07663 3.65223 3.68931 3.76088 3.77595 3.89438 4.14385 4.17039 4.22131 4.37397 4.42155 4.45348 4.49107 4.56059 4.62505 4.64467 4.72179 4.83455 4.89005 4.91733 4.92534 4.97637 5.02270 5.18938 5.23329 5.34612 5.40926 5.50762 5.62846 5.75908 5.85891 5.97624 6.10122 6.47631 6.68167 6.92313 7.28290 7.57409 8.81615 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.003866 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.693043 B = 7241.247505 C = 8023.936911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.157 4.157 3 C -0.108 4.108 4 C 0.141 3.859 5 N -0.442 5.442 6 C 0.206 3.794 7 C 0.382 3.618 8 N -0.518 5.518 9 C 0.146 3.854 10 C -0.194 4.194 11 C 0.139 3.861 12 N -0.520 5.520 13 N -0.267 5.267 14 N -0.359 5.359 15 C 0.387 3.613 16 N -0.442 5.442 17 C 0.042 3.958 18 C 0.209 3.791 19 H 0.003 0.997 20 C -0.138 4.138 21 C -0.506 4.506 22 H 0.067 0.933 23 C 0.035 3.965 24 N -0.932 5.932 25 Si 0.925 3.075 26 H -0.268 1.268 27 H -0.291 1.291 28 H -0.264 1.264 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.219 0.781 37 H 0.200 0.800 38 H 0.204 0.796 39 H 0.026 0.974 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.040 0.960 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.697 -13.587 10.793 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.165 4.165 4 C 0.021 3.979 5 N -0.135 5.135 6 C -0.061 4.061 7 C 0.115 3.885 8 N -0.235 5.235 9 C -0.019 4.019 10 C -0.216 4.216 11 C -0.025 4.025 12 N -0.235 5.235 13 N -0.110 5.110 14 N -0.206 5.206 15 C 0.030 3.970 16 N -0.166 5.166 17 C -0.104 4.104 18 C 0.102 3.898 19 H 0.021 0.979 20 C -0.195 4.195 21 C -0.544 4.544 22 H 0.086 0.914 23 C -0.164 4.164 24 N -0.571 5.571 25 Si 0.754 3.246 26 H -0.195 1.195 27 H -0.219 1.219 28 H -0.189 1.189 29 H 0.126 0.874 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.119 0.881 36 H 0.235 0.765 37 H 0.217 0.783 38 H 0.221 0.779 39 H 0.045 0.955 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.531 -12.996 9.424 28.485 hybrid contribution -0.052 -0.165 -0.256 0.309 sum -23.583 -13.161 9.168 28.521 Atomic orbital electron populations 1.24136 0.94737 1.03295 0.96783 1.21781 0.95975 0.94637 1.03378 1.20740 1.00229 0.94420 1.01115 1.21346 1.02253 0.97237 0.77080 1.46302 1.16686 1.35763 1.14769 1.21671 0.96319 0.99520 0.88604 1.18775 0.90217 0.92408 0.87126 1.68232 1.13932 1.24094 1.17195 1.24090 0.87688 0.88474 1.01659 1.23541 1.03827 0.99871 0.94313 1.24011 0.88120 0.92847 0.97557 1.68282 1.12252 1.08058 1.34929 1.74319 1.02135 1.15920 1.18653 1.74872 1.15195 1.12005 1.18529 1.22827 0.91354 0.94292 0.88554 1.58703 1.11581 1.27303 1.19018 1.22415 0.95475 0.97878 0.94660 1.19434 0.90835 0.93155 0.86386 0.97895 1.22050 0.98888 0.99906 0.98700 1.20993 1.12911 1.25568 0.94922 0.91448 1.25382 0.94643 0.94442 1.01938 1.69944 1.20553 1.30432 1.36216 0.86207 0.76482 0.79728 0.82229 1.19472 1.21857 1.18865 0.87450 0.86211 0.94220 0.90442 0.91805 0.84477 0.88111 0.76480 0.78256 0.77897 0.95548 0.88894 0.89807 0.93993 0.92558 0.94199 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 13.84 67.78 0.94 -2.16 16 2 C -0.16 -3.89 5.63 -16.48 -0.09 -3.99 16 3 C -0.11 -2.98 10.03 71.24 0.71 -2.27 16 4 C 0.14 3.61 5.88 85.63 0.50 4.11 16 5 N -0.44 -15.09 2.81 -521.10 -1.46 -16.55 16 6 C 0.21 7.41 7.92 136.12 1.08 8.49 16 7 C 0.38 10.59 7.58 137.22 1.04 11.63 16 8 N -0.52 -9.93 5.80 -189.45 -1.10 -11.02 16 9 C 0.15 1.31 11.29 84.76 0.96 2.27 16 10 C -0.19 -1.20 10.17 22.50 0.23 -0.97 16 11 C 0.14 1.87 11.30 84.76 0.96 2.83 16 12 N -0.52 -13.44 10.34 -189.45 -1.96 -15.40 16 13 N -0.27 -11.62 12.19 -50.83 -0.62 -12.23 16 14 N -0.36 -16.70 9.91 -58.18 -0.58 -17.27 16 15 C 0.39 15.97 6.05 260.25 1.57 17.54 16 16 N -0.44 -18.67 4.64 -711.29 -3.30 -21.97 16 17 C 0.04 1.56 9.08 127.69 1.16 2.72 16 18 C 0.21 10.38 1.31 44.17 0.06 10.44 16 19 H 0.00 0.18 6.97 -2.39 -0.02 0.17 16 20 C -0.14 -6.70 8.50 71.98 0.61 -6.09 16 21 C -0.51 -27.95 8.53 25.60 0.22 -27.73 16 22 H 0.07 3.92 6.64 -2.91 -0.02 3.90 16 23 C 0.04 2.04 5.45 84.65 0.46 2.50 16 24 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 25 Si 0.93 46.68 24.37 68.60 1.67 48.35 16 26 H -0.27 -13.07 6.87 99.48 0.68 -12.39 16 27 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 28 H -0.26 -13.41 6.53 99.48 0.65 -12.76 16 29 H 0.11 1.98 8.05 -2.91 -0.02 1.96 16 30 H 0.12 2.11 5.97 -2.91 -0.02 2.09 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.76 8.06 -2.39 -0.02 1.74 16 33 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 34 H 0.14 2.93 5.82 -2.39 -0.01 2.92 16 35 H 0.10 2.45 6.35 -2.38 -0.02 2.44 16 36 H 0.22 -0.07 8.06 -2.91 -0.02 -0.09 16 37 H 0.20 -0.67 8.06 -2.91 -0.02 -0.69 16 38 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 3.62 6.31 -2.39 -0.02 3.61 16 41 H 0.08 2.47 6.41 -2.39 -0.02 2.45 16 42 H 0.04 2.02 6.17 -2.39 -0.01 2.00 16 43 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.04 1.97 3.27 -2.39 -0.01 1.96 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.03 362.07 4.30 -74.73 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.94 Total: 8.21 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 10.41 Total: 19.32 kcal Atomic # 7 Polarization: -141.89 SS G_CDS: -8.72 Total: -150.61 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.67 Total: 48.35 kcal Total: -79.03 4.30 -74.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417492003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.521 kcal (2) G-P(sol) polarization free energy of solvation -79.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds