Wall clock time and date at job start Tue Mar 31 2020 16:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00391 * 2 1 4 4 H 1.48498 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47131 * 300.00436 * 3 2 1 6 6 H 1.48503 * 109.47063 * 60.00122 * 3 2 1 7 7 C 1.37879 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00645 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47428 * 305.00230 * 11 10 9 13 13 N 1.46908 * 109.47039 * 64.99966 * 11 10 9 14 14 C 1.50695 * 109.47353 * 185.00109 * 11 10 9 15 15 O 1.21294 * 120.00203 * 265.97906 * 14 11 10 16 16 N 1.34775 * 119.99988 * 85.97253 * 14 11 10 17 17 C 1.46761 * 125.01207 * 354.74074 * 16 14 11 18 18 C 1.53009 * 104.88421 * 180.02562 * 17 16 14 19 19 C 1.53543 * 110.90349 * 239.78500 * 18 17 16 20 20 C 1.55060 * 104.00890 * 215.31874 * 19 18 17 21 21 C 1.54954 * 102.84610 * 37.31251 * 20 19 18 22 22 C 1.53161 * 111.09357 * 120.45747 * 18 17 16 23 23 C 1.50532 * 105.33440 * 359.95076 * 18 17 16 24 24 C 1.38194 * 131.45732 * 180.08488 * 23 18 17 25 25 C 1.38194 * 120.23135 * 180.02562 * 24 23 18 26 26 C 1.38299 * 119.83827 * 359.97438 * 25 24 23 27 27 C 1.37835 * 120.19377 * 359.96929 * 26 25 24 28 28 C 1.38777 * 108.19014 * 0.04669 * 23 18 17 29 29 H 0.97005 * 120.00277 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46655 * 60.00401 * 9 7 2 31 31 H 1.09001 * 109.47268 * 300.00734 * 9 7 2 32 32 H 1.08994 * 109.47413 * 60.00418 * 10 9 7 33 33 H 1.09000 * 109.47111 * 299.99897 * 10 9 7 34 34 H 1.00897 * 110.99543 * 59.99991 * 13 11 10 35 35 H 1.00901 * 110.99793 * 183.95136 * 13 11 10 36 36 H 1.09005 * 110.35482 * 61.21765 * 17 16 14 37 37 H 1.08997 * 110.45524 * 298.96428 * 17 16 14 38 38 H 1.09003 * 110.51692 * 333.94504 * 19 18 17 39 39 H 1.08999 * 110.52037 * 96.68080 * 19 18 17 40 40 H 1.09000 * 110.73345 * 278.97675 * 20 19 18 41 41 H 1.09003 * 110.73807 * 155.65644 * 20 19 18 42 42 H 1.08999 * 110.47989 * 203.78050 * 21 20 19 43 43 H 1.09003 * 110.47807 * 81.14940 * 21 20 19 44 44 H 1.08998 * 110.09141 * 240.43068 * 22 18 17 45 45 H 1.08996 * 110.08893 * 1.95799 * 22 18 17 46 46 H 1.07997 * 119.88579 * 359.97398 * 24 23 18 47 47 H 1.08008 * 120.08177 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.90302 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.82546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7876 -5.0073 0.8403 13 7 0.7287 -5.1182 -1.2568 14 6 2.4545 -6.1300 0.1227 15 8 2.8703 -6.6832 -0.8735 16 7 2.8642 -6.5373 1.3403 17 6 2.5205 -5.8813 2.6074 18 6 3.2204 -6.7139 3.6835 19 6 2.2026 -7.2915 4.6775 20 6 2.9473 -7.2616 6.0373 21 6 3.7545 -5.9412 5.9590 22 6 4.2084 -5.8608 4.4847 23 6 3.9298 -7.8126 2.9381 24 6 4.7171 -8.8583 3.3811 25 6 5.2638 -9.7492 2.4771 26 6 5.0211 -9.5930 1.1246 27 6 4.2356 -8.5526 0.6768 28 6 3.6798 -7.6481 1.5830 29 1 -0.4851 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6245 -2.5571 0.8896 32 1 2.8717 -3.6045 0.8894 33 1 2.8718 -3.6044 -0.8905 34 1 1.3488 -5.1022 -2.0525 35 1 0.1643 -5.9546 -1.2548 36 1 1.4414 -5.8946 2.7607 37 1 2.8918 -4.8566 2.6188 38 1 1.3102 -6.6668 4.7169 39 1 1.9424 -8.3147 4.4067 40 1 3.6157 -8.1176 6.1301 41 1 2.2386 -7.2323 6.8649 42 1 4.6184 -5.9825 6.6224 43 1 3.1201 -5.0910 6.2098 44 1 5.2174 -6.2600 4.3813 45 1 4.1775 -4.8277 4.1385 46 1 4.9065 -8.9793 4.4375 47 1 5.8791 -10.5654 2.8260 48 1 5.4481 -10.2884 0.4171 49 1 4.0496 -8.4365 -0.3807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424125503.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:52 Heat of formation + Delta-G solvation = -22.192814 kcal Electronic energy + Delta-G solvation = -28657.740473 eV Core-core repulsion = 24969.350922 eV Total energy + Delta-G solvation = -3688.389551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68001 -39.32354 -37.76317 -35.83598 -35.33794 -32.85735 -31.63050 -30.27145 -30.03560 -29.32814 -29.00566 -26.57434 -25.03042 -23.91470 -22.89810 -22.07958 -20.98094 -20.40121 -19.52812 -19.32751 -17.36229 -16.76292 -16.28312 -16.19305 -15.78158 -15.53725 -15.27199 -15.08992 -14.58217 -14.34909 -14.27112 -13.84780 -13.75117 -13.48788 -13.47413 -12.76765 -12.61787 -12.36185 -12.16134 -12.09539 -11.85314 -11.62992 -11.49469 -11.33587 -11.28278 -11.11536 -10.93267 -10.76889 -10.74035 -10.64204 -10.55222 -10.24650 -10.13910 -9.83785 -9.43752 -9.03056 -8.89459 -8.45428 -8.27378 -7.85384 -5.96891 -3.99130 1.17359 1.29283 2.62542 2.76455 3.31990 3.39873 3.43739 3.68614 4.08533 4.14151 4.37332 4.46611 4.54054 4.67316 4.81957 4.88178 4.93520 5.02209 5.06978 5.19498 5.22219 5.28271 5.36267 5.39350 5.43184 5.48558 5.50817 5.57262 5.59719 5.67969 5.72911 5.73586 5.79920 5.89183 5.95468 6.04179 6.13492 6.20853 6.33196 6.37854 6.38910 6.46601 6.59295 6.94277 7.01494 7.26038 7.38045 7.68148 7.72354 7.91233 8.03596 8.08699 8.44648 9.08648 9.64358 11.13979 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003468 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.387886 B = 8072.608552 C = 9384.751727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.095 4.095 11 C 0.084 3.916 12 H 0.099 0.901 13 N -0.805 5.805 14 C 0.492 3.508 15 O -0.529 6.529 16 N -0.553 5.553 17 C 0.106 3.894 18 C -0.027 4.027 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.076 4.076 25 C -0.149 4.149 26 C -0.095 4.095 27 C -0.136 4.136 28 C 0.151 3.849 29 H 0.259 0.741 30 H 0.036 0.964 31 H 0.013 0.987 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.350 0.650 35 H 0.335 0.665 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 -19.654 11.687 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.134 4.134 11 C -0.032 4.032 12 H 0.117 0.883 13 N -0.333 5.333 14 C 0.282 3.718 15 O -0.405 6.405 16 N -0.276 5.276 17 C -0.016 4.016 18 C -0.027 4.027 19 C -0.147 4.147 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.149 4.149 23 C -0.125 4.125 24 C -0.094 4.094 25 C -0.168 4.168 26 C -0.114 4.114 27 C -0.157 4.157 28 C 0.055 3.945 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.549 -18.990 11.206 23.002 hybrid contribution 1.046 0.041 -0.184 1.063 sum 7.595 -18.949 11.022 23.200 Atomic orbital electron populations 1.69979 1.05943 1.26349 1.50826 1.24980 0.94799 0.99055 0.95421 0.86601 0.80132 0.84073 0.77570 1.19843 1.21028 1.21061 1.21295 0.92932 0.91233 1.50614 0.92934 1.19013 0.93457 0.89704 0.98263 1.21685 0.98963 0.91933 1.00792 1.21880 0.93186 0.92848 0.95258 0.88300 1.59010 1.26778 1.44306 1.03172 1.22986 0.82337 0.85525 0.80987 1.90622 1.56614 1.57266 1.35957 1.46293 1.47189 1.26239 1.07889 1.22545 1.01035 0.97522 0.80489 1.20194 0.95152 0.92811 0.94577 1.22439 0.97142 1.01296 0.93775 1.22538 0.98798 0.97795 0.96891 1.22422 0.99840 0.97924 0.95992 1.22273 0.98398 0.99720 0.94543 1.19825 1.01949 0.98223 0.92492 1.20281 0.96291 0.93293 0.99540 1.20957 1.02364 1.00316 0.93178 1.20905 0.97544 0.97129 0.95794 1.20937 0.99614 0.94876 1.00247 1.18617 0.92987 0.88901 0.93955 0.93122 0.94596 0.96825 0.92891 0.92628 0.83584 0.85364 0.89425 0.88678 0.90554 0.91162 0.91557 0.91348 0.91574 0.91117 0.91107 0.90628 0.86078 0.85915 0.85776 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 10 C -0.10 -1.93 4.78 -26.73 -0.13 -2.06 16 11 C 0.08 1.42 2.61 -68.86 -0.18 1.24 16 12 H 0.10 1.57 7.24 -51.93 -0.38 1.20 16 13 N -0.80 -13.44 8.50 -5.65 -0.05 -13.48 16 14 C 0.49 8.20 6.98 -10.99 -0.08 8.12 16 15 O -0.53 -9.89 14.51 5.55 0.08 -9.81 16 16 N -0.55 -8.13 3.14 -113.07 -0.35 -8.48 16 17 C 0.11 1.29 5.77 -3.90 -0.02 1.26 16 18 C -0.03 -0.28 0.89 -155.37 -0.14 -0.42 16 19 C -0.11 -0.94 5.88 -25.36 -0.15 -1.09 16 20 C -0.12 -0.89 6.91 -24.61 -0.17 -1.06 16 21 C -0.12 -0.96 6.85 -24.93 -0.17 -1.13 16 22 C -0.11 -1.06 6.16 -25.88 -0.16 -1.22 16 23 C -0.12 -1.44 4.54 -104.52 -0.47 -1.91 16 24 C -0.08 -0.77 9.96 -39.61 -0.39 -1.16 16 25 C -0.15 -1.47 10.06 -39.57 -0.40 -1.87 16 26 C -0.10 -1.06 10.02 -39.71 -0.40 -1.46 16 27 C -0.14 -1.92 9.46 -39.23 -0.37 -2.29 16 28 C 0.15 2.17 6.63 -83.46 -0.55 1.61 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 1.02 7.14 -51.93 -0.37 0.65 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.35 5.91 8.55 -39.29 -0.34 5.57 16 35 H 0.33 4.81 9.06 -39.29 -0.36 4.45 16 36 H 0.09 0.96 6.96 -51.93 -0.36 0.59 16 37 H 0.10 1.19 6.15 -51.93 -0.32 0.87 16 38 H 0.08 0.62 7.53 -51.93 -0.39 0.23 16 39 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16 40 H 0.07 0.45 7.75 -51.93 -0.40 0.05 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.69 7.65 -51.93 -0.40 0.29 16 45 H 0.08 0.76 7.14 -51.93 -0.37 0.39 16 46 H 0.12 0.97 7.67 -52.49 -0.40 0.57 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.14 2.12 6.30 -52.49 -0.33 1.79 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -32.04 384.82 -10.86 -42.90 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.72 Total: 8.45 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -4.33 Total: -16.09 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.33 Total: -47.80 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.04 -10.86 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424125503.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.705 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds