Wall clock time and date at job start Tue Mar 31 2020 16:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00391 * 2 1 4 4 H 1.48498 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47131 * 300.00436 * 3 2 1 6 6 H 1.48503 * 109.47063 * 60.00122 * 3 2 1 7 7 C 1.37879 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00645 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47428 * 305.00230 * 11 10 9 13 13 N 1.46908 * 109.47039 * 64.99966 * 11 10 9 14 14 C 1.50695 * 109.47353 * 185.00109 * 11 10 9 15 15 O 1.21294 * 120.00203 * 265.97906 * 14 11 10 16 16 N 1.34775 * 119.99988 * 85.97253 * 14 11 10 17 17 C 1.46761 * 125.01207 * 354.74074 * 16 14 11 18 18 C 1.53009 * 104.88421 * 180.02562 * 17 16 14 19 19 C 1.53543 * 110.90349 * 239.78500 * 18 17 16 20 20 C 1.55060 * 104.00890 * 215.31874 * 19 18 17 21 21 C 1.54954 * 102.84610 * 37.31251 * 20 19 18 22 22 C 1.53161 * 111.09357 * 120.45747 * 18 17 16 23 23 C 1.50532 * 105.33440 * 359.95076 * 18 17 16 24 24 C 1.38194 * 131.45732 * 180.08488 * 23 18 17 25 25 C 1.38194 * 120.23135 * 180.02562 * 24 23 18 26 26 C 1.38299 * 119.83827 * 359.97438 * 25 24 23 27 27 C 1.37835 * 120.19377 * 359.96929 * 26 25 24 28 28 C 1.38777 * 108.19014 * 0.04669 * 23 18 17 29 29 H 0.97005 * 120.00277 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46655 * 60.00401 * 9 7 2 31 31 H 1.09001 * 109.47268 * 300.00734 * 9 7 2 32 32 H 1.08994 * 109.47413 * 60.00418 * 10 9 7 33 33 H 1.09000 * 109.47111 * 299.99897 * 10 9 7 34 34 H 1.00897 * 110.99543 * 59.99991 * 13 11 10 35 35 H 1.00901 * 110.99793 * 183.95136 * 13 11 10 36 36 H 1.09005 * 110.35482 * 61.21765 * 17 16 14 37 37 H 1.08997 * 110.45524 * 298.96428 * 17 16 14 38 38 H 1.09003 * 110.51692 * 333.94504 * 19 18 17 39 39 H 1.08999 * 110.52037 * 96.68080 * 19 18 17 40 40 H 1.09000 * 110.73345 * 278.97675 * 20 19 18 41 41 H 1.09003 * 110.73807 * 155.65644 * 20 19 18 42 42 H 1.08999 * 110.47989 * 203.78050 * 21 20 19 43 43 H 1.09003 * 110.47807 * 81.14940 * 21 20 19 44 44 H 1.08998 * 110.09141 * 240.43068 * 22 18 17 45 45 H 1.08996 * 110.08893 * 1.95799 * 22 18 17 46 46 H 1.07997 * 119.88579 * 359.97398 * 24 23 18 47 47 H 1.08008 * 120.08177 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.90302 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.82546 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7876 -5.0073 0.8403 13 7 0.7287 -5.1182 -1.2568 14 6 2.4545 -6.1300 0.1227 15 8 2.8703 -6.6832 -0.8735 16 7 2.8642 -6.5373 1.3403 17 6 2.5205 -5.8813 2.6074 18 6 3.2204 -6.7139 3.6835 19 6 2.2026 -7.2915 4.6775 20 6 2.9473 -7.2616 6.0373 21 6 3.7545 -5.9412 5.9590 22 6 4.2084 -5.8608 4.4847 23 6 3.9298 -7.8126 2.9381 24 6 4.7171 -8.8583 3.3811 25 6 5.2638 -9.7492 2.4771 26 6 5.0211 -9.5930 1.1246 27 6 4.2356 -8.5526 0.6768 28 6 3.6798 -7.6481 1.5830 29 1 -0.4851 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6245 -2.5571 0.8896 32 1 2.8717 -3.6045 0.8894 33 1 2.8718 -3.6044 -0.8905 34 1 1.3488 -5.1022 -2.0525 35 1 0.1643 -5.9546 -1.2548 36 1 1.4414 -5.8946 2.7607 37 1 2.8918 -4.8566 2.6188 38 1 1.3102 -6.6668 4.7169 39 1 1.9424 -8.3147 4.4067 40 1 3.6157 -8.1176 6.1301 41 1 2.2386 -7.2323 6.8649 42 1 4.6184 -5.9825 6.6224 43 1 3.1201 -5.0910 6.2098 44 1 5.2174 -6.2600 4.3813 45 1 4.1775 -4.8277 4.1385 46 1 4.9065 -8.9793 4.4375 47 1 5.8791 -10.5654 2.8260 48 1 5.4481 -10.2884 0.4171 49 1 4.0496 -8.4365 -0.3807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424125503.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:51 Heat of formation + Delta-G solvation = -40.453262 kcal Electronic energy + Delta-G solvation = -28658.532305 eV Core-core repulsion = 24969.350922 eV Total energy + Delta-G solvation = -3689.181384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.67697 -40.51142 -38.57391 -36.95811 -36.81093 -34.87518 -32.50188 -32.02138 -31.11613 -30.18670 -29.68492 -28.23357 -26.26037 -25.26764 -23.93782 -23.18710 -22.15813 -21.53056 -20.66957 -20.26057 -18.67470 -18.34036 -17.70505 -17.23316 -16.84958 -16.78954 -16.49293 -16.17066 -16.05388 -15.57139 -15.24326 -15.04068 -14.69391 -14.54321 -14.52661 -14.27088 -13.92049 -13.64293 -13.54980 -13.39176 -12.93895 -12.84178 -12.79176 -12.49855 -12.36390 -12.28911 -11.98026 -11.93810 -11.86184 -11.79343 -11.70363 -11.46421 -11.41861 -11.26799 -11.14312 -11.04920 -10.51314 -9.79138 -9.77628 -8.86598 -8.15524 -6.25771 0.20211 0.38652 1.38591 1.40531 1.42072 1.53918 1.64941 2.43193 2.78953 3.09718 3.17650 3.27983 3.43496 3.57753 3.63184 3.88523 3.93370 4.03428 4.13699 4.18150 4.26364 4.29918 4.37801 4.42289 4.53952 4.54371 4.58319 4.68250 4.75318 4.76856 4.84505 4.89026 4.99679 5.00295 5.11673 5.14539 5.19141 5.28717 5.33295 5.37875 5.44773 5.49942 5.54030 5.54430 5.58680 5.79268 5.94274 5.95915 6.05370 6.18645 6.27448 6.39181 6.77671 6.91565 7.42383 8.95809 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003468 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.387886 B = 8072.608552 C = 9384.751727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.081 4.081 11 C 0.095 3.905 12 H 0.110 0.890 13 N -0.813 5.813 14 C 0.492 3.508 15 O -0.557 6.557 16 N -0.552 5.552 17 C 0.096 3.904 18 C -0.023 4.023 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.074 4.074 25 C -0.136 4.136 26 C -0.099 4.099 27 C -0.160 4.160 28 C 0.111 3.889 29 H 0.263 0.737 30 H 0.008 0.992 31 H -0.003 1.003 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.348 0.652 35 H 0.348 0.652 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.151 0.849 47 H 0.158 0.842 48 H 0.145 0.855 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.438 -20.786 14.247 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.006 3.994 10 C -0.119 4.119 11 C -0.021 4.021 12 H 0.128 0.872 13 N -0.343 5.343 14 C 0.282 3.718 15 O -0.435 6.435 16 N -0.274 5.274 17 C -0.025 4.025 18 C -0.023 4.023 19 C -0.145 4.145 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.121 4.121 24 C -0.093 4.093 25 C -0.155 4.155 26 C -0.117 4.117 27 C -0.180 4.180 28 C 0.016 3.984 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.169 0.831 47 H 0.176 0.824 48 H 0.162 0.838 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.048 -20.147 13.803 25.714 hybrid contribution 0.613 0.312 -0.960 1.181 sum 8.660 -19.835 12.843 25.167 Atomic orbital electron populations 1.70099 1.07539 1.27503 1.51585 1.25857 0.95692 1.02884 0.94882 0.85505 0.78997 0.79353 0.77822 1.19020 1.20654 1.20058 1.21703 0.93230 0.92677 1.50583 0.92888 1.18795 0.93641 0.90934 0.96001 1.21389 0.97894 0.92081 1.00543 1.21621 0.93188 0.91493 0.95804 0.87207 1.58998 1.26955 1.45301 1.03014 1.22676 0.82256 0.85410 0.81502 1.90607 1.57615 1.58247 1.37036 1.46247 1.46843 1.26541 1.07797 1.22786 1.02002 0.97428 0.80247 1.20224 0.95596 0.92287 0.94207 1.22439 0.96918 1.01022 0.94102 1.22531 0.98905 0.97736 0.96169 1.22410 1.00381 0.98313 0.94666 1.22266 0.98133 0.98815 0.95744 1.20083 1.01796 0.98796 0.91390 1.20682 0.95092 0.92283 1.01199 1.21397 1.01288 1.00560 0.92257 1.21185 0.96798 0.96487 0.97274 1.20961 1.01358 0.96536 0.99182 1.18920 0.94587 0.89446 0.95404 0.92849 0.97386 0.98414 0.92014 0.93943 0.83845 0.83867 0.88407 0.89505 0.90275 0.91339 0.90508 0.90138 0.90340 0.91248 0.91174 0.91766 0.83112 0.82396 0.83762 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 2 C 0.00 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.04 2.27 4.86 29.85 0.15 2.41 16 10 C -0.08 -3.38 4.78 30.59 0.15 -3.23 16 11 C 0.09 3.32 2.61 44.17 0.12 3.44 16 12 H 0.11 3.58 7.24 -2.39 -0.02 3.56 16 13 N -0.81 -28.26 8.50 -171.79 -1.46 -29.72 16 14 C 0.49 17.07 6.98 87.66 0.61 17.68 16 15 O -0.56 -21.92 14.51 -3.07 -0.04 -21.97 16 16 N -0.55 -16.63 3.14 -630.03 -1.98 -18.61 16 17 C 0.10 2.35 5.77 86.33 0.50 2.85 16 18 C -0.02 -0.44 0.89 -52.74 -0.05 -0.49 16 19 C -0.11 -1.62 5.88 31.48 0.19 -1.44 16 20 C -0.12 -1.31 6.91 31.97 0.22 -1.09 16 21 C -0.12 -1.55 6.85 31.76 0.22 -1.34 16 22 C -0.11 -1.95 6.16 31.15 0.19 -1.76 16 23 C -0.12 -2.61 4.54 -19.80 -0.09 -2.70 16 24 C -0.07 -1.27 9.96 22.25 0.22 -1.05 16 25 C -0.14 -2.23 10.06 22.27 0.22 -2.01 16 26 C -0.10 -2.07 10.02 22.19 0.22 -1.85 16 27 C -0.16 -4.58 9.46 22.50 0.21 -4.37 16 28 C 0.11 3.20 6.63 38.30 0.25 3.46 16 29 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 30 H 0.01 0.44 7.75 -2.38 -0.02 0.43 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.06 2.44 7.14 -2.39 -0.02 2.42 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.35 12.33 8.55 -89.70 -0.77 11.56 16 35 H 0.35 10.32 9.06 -89.69 -0.81 9.51 16 36 H 0.10 2.12 6.96 -2.38 -0.02 2.11 16 37 H 0.09 2.23 6.15 -2.39 -0.01 2.21 16 38 H 0.08 1.16 7.53 -2.39 -0.02 1.14 16 39 H 0.07 1.08 7.83 -2.39 -0.02 1.06 16 40 H 0.08 0.73 7.75 -2.39 -0.02 0.71 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.23 7.65 -2.39 -0.02 1.21 16 45 H 0.06 1.26 7.14 -2.39 -0.02 1.24 16 46 H 0.15 1.69 7.67 -2.91 -0.02 1.67 16 47 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 48 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 49 H 0.11 3.66 6.30 -2.91 -0.02 3.64 16 Total: -1.00 -70.78 384.82 2.24 -68.54 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.61 Total: 32.63 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 4.03 Total: -21.48 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -3.15 Total: -104.15 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.04 Total: -21.97 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.78 2.24 -68.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424125503.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.087 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds