Wall clock time and date at job start Tue Mar 31 2020 15:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.74045 * 2 1 4 4 O 1.44643 * 110.82460 * 123.42509 * 2 1 3 5 5 C 1.43733 * 105.57763 * 155.94939 * 4 2 1 6 6 C 1.52996 * 109.71776 * 215.13210 * 5 4 2 7 7 C 1.53000 * 109.71664 * 94.57882 * 5 4 2 8 8 N 1.47192 * 108.28528 * 334.85774 * 5 4 2 9 9 C 1.34777 * 126.93949 * 181.16614 * 8 5 4 10 10 O 1.21507 * 120.00243 * 359.97438 * 9 8 5 11 11 O 1.34644 * 119.99827 * 179.97438 * 9 8 5 12 12 C 1.45196 * 116.99750 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47120 * 60.00078 * 12 11 9 14 14 C 1.52998 * 109.47070 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.47463 * 300.00089 * 12 11 9 16 16 C 1.47975 * 106.12142 * 1.42414 * 8 5 4 17 17 H 1.09006 * 110.75606 * 262.69157 * 16 8 5 18 18 C 1.50697 * 110.75428 * 139.32625 * 16 8 5 19 19 O 1.21293 * 120.00397 * 0.02562 * 18 16 8 20 20 N 1.34784 * 119.99816 * 179.97438 * 18 16 8 21 21 C 1.37100 * 119.99606 * 180.02562 * 20 18 16 22 22 H 1.07994 * 120.00288 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99667 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00004 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99907 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46939 * 89.99639 * 25 23 21 27 27 H 1.48499 * 109.46976 * 209.99461 * 25 23 21 28 28 H 1.48500 * 109.47146 * 329.99712 * 25 23 21 29 29 H 1.08999 * 109.47543 * 298.03351 * 1 2 3 30 30 H 1.09002 * 109.46993 * 58.03137 * 1 2 3 31 31 H 1.09002 * 109.47613 * 178.02692 * 1 2 3 32 32 H 1.08994 * 109.47356 * 178.84764 * 6 5 4 33 33 H 1.09005 * 109.47109 * 298.84475 * 6 5 4 34 34 H 1.08997 * 109.47155 * 58.84384 * 6 5 4 35 35 H 1.09005 * 109.47219 * 301.15316 * 7 5 4 36 36 H 1.08997 * 109.46914 * 61.15747 * 7 5 4 37 37 H 1.08999 * 109.47406 * 181.15536 * 7 5 4 38 38 H 1.09004 * 109.47306 * 59.99657 * 13 12 11 39 39 H 1.09003 * 109.47378 * 179.97438 * 13 12 11 40 40 H 1.09006 * 109.47255 * 299.99726 * 13 12 11 41 41 H 1.08999 * 109.47084 * 60.00195 * 14 12 11 42 42 H 1.09003 * 109.46954 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.47592 * 300.00297 * 14 12 11 44 44 H 1.09005 * 109.46853 * 59.99673 * 15 12 11 45 45 H 1.08994 * 109.47198 * 179.97438 * 15 12 11 46 46 H 1.08999 * 109.46961 * 299.99970 * 15 12 11 47 47 H 0.96991 * 119.99772 * 0.02562 * 20 18 16 48 48 H 0.96993 * 119.99881 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9160 1.0194 0.0000 4 8 2.0442 -0.7447 1.1283 5 6 3.3632 -1.1668 0.7435 6 6 3.6545 -2.5493 1.3304 7 6 4.3967 -0.1616 1.2556 8 7 3.4175 -1.2297 -0.7261 9 6 4.4686 -1.6031 -1.4825 10 8 5.5111 -1.9339 -0.9532 11 8 4.3635 -1.6095 -2.8248 12 6 5.5356 -2.0224 -3.5758 13 6 5.9131 -3.4530 -3.1861 14 6 5.2275 -1.9668 -5.0734 15 6 6.7012 -1.0832 -3.2592 16 6 2.0870 -0.7941 -1.2055 17 1 1.4545 -1.6545 -1.4242 18 6 2.2199 0.0943 -2.4155 19 8 3.3184 0.3554 -2.8585 20 7 1.1179 0.5978 -3.0061 21 6 1.2389 1.4056 -4.1072 22 1 2.2170 1.6387 -4.5011 23 6 0.1029 1.9251 -4.7158 24 7 -1.0874 1.6418 -4.2362 25 14 0.2676 3.0263 -6.2157 26 1 0.2434 2.1944 -7.4455 27 1 -0.8612 3.9907 -6.2481 28 1 1.5515 3.7692 -6.1458 29 1 -0.3634 0.4830 0.9071 30 1 -0.3633 0.5441 -0.8718 31 1 -0.3634 -1.0270 -0.0354 32 1 4.6473 -2.8743 1.0193 33 1 3.6133 -2.4982 2.4185 34 1 2.9104 -3.2605 0.9717 35 1 4.1801 0.8241 0.8436 36 1 4.3532 -0.1182 2.3438 37 1 5.3933 -0.4745 0.9441 38 1 5.0827 -4.1222 -3.4116 39 1 6.7927 -3.7632 -3.7501 40 1 6.1325 -3.4931 -2.1191 41 1 4.9583 -0.9478 -5.3513 42 1 6.1075 -2.2764 -5.6371 43 1 4.3972 -2.6362 -5.2987 44 1 6.9205 -1.1233 -2.1922 45 1 7.5812 -1.3935 -3.8225 46 1 6.4323 -0.0641 -3.5368 47 1 0.2395 0.3887 -2.6520 48 1 -1.8803 2.0042 -4.6612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491824086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:07 Heat of formation + Delta-G solvation = -145.007219 kcal Electronic energy + Delta-G solvation = -31687.611664 eV Core-core repulsion = 27550.754467 eV Total energy + Delta-G solvation = -4136.857198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98779 -39.54538 -37.89841 -36.46470 -34.36282 -33.63372 -33.62716 -32.88776 -31.24435 -29.88831 -27.31031 -27.11388 -27.03527 -26.91943 -24.78632 -23.10450 -21.80608 -20.48745 -19.65262 -18.80036 -18.08587 -17.26985 -16.97294 -16.05939 -15.81912 -15.44473 -14.92644 -14.66811 -14.60242 -14.13678 -14.08089 -13.85697 -13.71743 -13.51519 -13.15907 -12.86850 -12.66442 -12.44384 -12.15680 -12.10565 -11.95494 -11.91322 -11.82585 -11.60483 -11.49354 -11.46351 -11.44686 -11.39837 -11.22639 -11.08130 -11.02300 -10.83807 -10.44013 -10.27582 -9.86527 -9.81356 -9.59625 -9.51479 -8.86014 -8.24954 -8.03063 -6.49355 -3.89511 2.36416 3.11834 3.22474 3.26909 3.31053 3.60542 3.74134 4.04322 4.19195 4.72905 4.79492 4.88000 5.04220 5.08122 5.12043 5.17967 5.21470 5.27078 5.33561 5.48499 5.58180 5.70601 5.71456 5.75864 5.81899 5.84394 5.89328 5.92212 5.95147 6.00613 6.07083 6.13972 6.18169 6.20869 6.30001 6.32466 6.34374 6.43571 6.57310 6.65409 6.91800 6.96760 7.48698 7.79718 7.96083 8.51062 8.80549 9.09434 9.42380 9.92918 10.68185 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.005696 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.112831 B = 4914.254882 C = 6920.872592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 H 0.086 0.914 4 O -0.357 6.357 5 C 0.341 3.659 6 C -0.155 4.155 7 C -0.174 4.174 8 N -0.603 5.603 9 C 0.698 3.302 10 O -0.581 6.581 11 O -0.311 6.311 12 C 0.135 3.865 13 C -0.182 4.182 14 C -0.136 4.136 15 C -0.175 4.175 16 C 0.091 3.909 17 H 0.098 0.902 18 C 0.437 3.563 19 O -0.552 6.552 20 N -0.556 5.556 21 C -0.296 4.296 22 H 0.104 0.896 23 C 0.025 3.975 24 N -0.899 5.899 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.392 0.608 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -7.190 6.856 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.104 0.896 4 O -0.275 6.275 5 C 0.220 3.780 6 C -0.213 4.213 7 C -0.232 4.232 8 N -0.349 5.349 9 C 0.456 3.544 10 O -0.473 6.473 11 O -0.223 6.223 12 C 0.097 3.903 13 C -0.239 4.239 14 C -0.194 4.194 15 C -0.233 4.233 16 C -0.017 4.017 17 H 0.116 0.884 18 C 0.221 3.779 19 O -0.434 6.434 20 N -0.194 5.194 21 C -0.426 4.426 22 H 0.122 0.878 23 C -0.177 4.177 24 N -0.540 5.540 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.226 0.774 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.977 -7.133 6.714 12.027 hybrid contribution -0.555 0.509 -0.802 1.101 sum 6.422 -6.624 5.912 10.957 Atomic orbital electron populations 1.21869 0.91136 1.03577 1.04035 1.23334 0.96318 0.95593 0.82714 0.89605 1.89177 1.28845 1.72041 1.37397 1.21644 0.84095 0.95277 0.77006 1.22158 1.03574 0.94287 1.01300 1.22459 0.99958 0.99274 1.01534 1.47512 1.11866 1.69601 1.05952 1.17051 0.81070 0.75031 0.81281 1.90801 1.27359 1.55124 1.74054 1.86722 1.40278 1.79679 1.15638 1.21930 0.83734 0.93640 0.90981 1.22536 1.01459 0.95425 1.04471 1.21768 1.01751 1.04003 0.91840 1.22413 0.96813 0.99848 1.04192 1.22631 0.84717 0.98406 0.95956 0.88447 1.19406 0.86119 0.86015 0.86395 1.90591 1.25557 1.61731 1.65548 1.41846 1.06901 1.43565 1.27070 1.19676 0.94927 1.23620 1.04347 0.87841 1.25244 0.94612 0.98443 0.99437 1.69592 0.97719 1.45303 1.41429 0.85868 0.78009 0.79497 0.80996 1.20384 1.20896 1.19452 0.90950 0.89325 0.91348 0.89534 0.90911 0.91856 0.91990 0.90973 0.89906 0.92638 0.91750 0.89659 0.90850 0.91083 0.91989 0.89927 0.92220 0.91736 0.77380 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.53 37.16 0.35 -1.72 16 2 C 0.08 1.27 3.50 -25.82 -0.09 1.18 16 3 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 4 O -0.36 -5.56 10.67 -35.23 -0.38 -5.94 16 5 C 0.34 5.39 1.08 -67.55 -0.07 5.31 16 6 C -0.16 -2.09 8.91 37.16 0.33 -1.76 16 7 C -0.17 -2.59 8.89 37.16 0.33 -2.26 16 8 N -0.60 -11.07 2.68 -160.43 -0.43 -11.50 16 9 C 0.70 13.70 6.78 54.06 0.37 14.06 16 10 O -0.58 -11.11 9.67 -19.28 -0.19 -11.30 16 11 O -0.31 -6.33 6.44 -48.51 -0.31 -6.65 16 12 C 0.13 2.26 1.13 -90.62 -0.10 2.16 16 13 C -0.18 -2.62 8.37 37.16 0.31 -2.31 16 14 C -0.14 -2.07 8.85 37.16 0.33 -1.74 16 15 C -0.18 -2.84 8.37 37.16 0.31 -2.53 16 16 C 0.09 1.68 3.27 -67.37 -0.22 1.46 16 17 H 0.10 1.69 8.03 -51.93 -0.42 1.27 16 18 C 0.44 9.90 6.71 -10.98 -0.07 9.82 16 19 O -0.55 -14.05 12.61 -19.05 -0.24 -14.29 16 20 N -0.56 -13.23 5.28 -10.96 -0.06 -13.29 16 21 C -0.30 -7.81 9.68 -14.93 -0.14 -7.95 16 22 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -23.17 13.05 55.50 0.72 -22.45 16 25 Si 0.93 20.29 29.55 -169.99 -5.02 15.26 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.37 6.29 -51.93 -0.33 1.04 16 31 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 32 H 0.09 1.23 6.78 -51.93 -0.35 0.88 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.30 6.94 -51.93 -0.36 0.94 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.35 5.88 -51.93 -0.31 1.04 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.45 5.88 -51.93 -0.31 1.15 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.39 8.85 5.86 -40.82 -0.24 8.61 16 48 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -29.44 376.84 -6.42 -35.86 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.73 Total: 14.35 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 1.53 Total: 14.26 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.24 Total: -47.24 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.12 Total: -38.17 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.44 -6.42 -35.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491824086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.148 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds