Wall clock time and date at job start Tue Mar 31 2020 15:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47251 * 2 1 4 4 C 1.53000 * 109.47040 * 239.99976 * 2 1 3 5 5 O 1.45202 * 109.47212 * 119.99903 * 2 1 3 6 6 C 1.34631 * 116.99863 * 60.00035 * 5 2 1 7 7 O 1.21517 * 120.00193 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00144 * 179.97438 * 6 5 2 9 9 C 1.46492 * 120.00268 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47441 * 90.00070 * 9 8 6 11 11 O 1.21293 * 119.99482 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99758 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00525 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99700 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99490 * 180.27578 * 15 13 12 17 17 Si 1.86800 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46758 * 90.00134 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99981 * 17 15 13 20 20 H 1.48496 * 109.47474 * 330.00017 * 17 15 13 21 21 C 1.46501 * 119.99674 * 359.97438 * 8 6 5 22 22 C 1.52994 * 109.47626 * 270.00082 * 21 8 6 23 23 H 1.09003 * 110.27247 * 59.29255 * 22 21 8 24 24 C 1.54936 * 110.31433 * 181.39149 * 22 21 8 25 25 C 1.55411 * 100.89485 * 155.28678 * 24 22 21 26 26 C 1.54375 * 102.31016 * 325.99053 * 25 24 22 27 27 O 1.43237 * 107.58884 * 21.28597 * 26 25 24 28 28 H 1.09010 * 109.46847 * 300.00136 * 1 2 3 29 29 H 1.08996 * 109.47393 * 59.99859 * 1 2 3 30 30 H 1.08997 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46950 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46797 * 300.00354 * 3 2 1 33 33 H 1.08998 * 109.47050 * 59.99905 * 3 2 1 34 34 H 1.08991 * 109.47222 * 299.99790 * 4 2 1 35 35 H 1.08998 * 109.47079 * 60.00353 * 4 2 1 36 36 H 1.09002 * 109.47181 * 179.97438 * 4 2 1 37 37 H 1.09006 * 109.47127 * 330.00270 * 9 8 6 38 38 H 1.09002 * 109.47526 * 210.00298 * 9 8 6 39 39 H 0.97000 * 119.99732 * 359.97438 * 12 10 9 40 40 H 0.97004 * 119.99472 * 179.72682 * 16 15 13 41 41 H 1.09008 * 109.46898 * 30.00343 * 21 8 6 42 42 H 1.09006 * 109.46812 * 149.99944 * 21 8 6 43 43 H 1.09001 * 111.12504 * 273.28088 * 24 22 21 44 44 H 1.09002 * 111.12689 * 37.43847 * 24 22 21 45 45 H 1.09005 * 110.88419 * 207.75337 * 25 24 22 46 46 H 1.08999 * 110.93411 * 84.25413 * 25 24 22 47 47 H 1.09002 * 109.83380 * 261.77245 * 26 25 24 48 48 H 1.09004 * 109.90721 * 140.83932 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4167 9 6 1.6740 -4.0668 2.5832 10 6 2.6983 -4.9579 1.9292 11 8 3.6624 -4.4705 1.3777 12 7 2.5426 -6.2964 1.9561 13 6 3.4748 -7.1070 1.3615 14 1 4.3337 -6.6731 0.8712 15 6 3.3144 -8.4870 1.3897 16 7 4.2108 -9.2642 0.8245 17 14 1.8292 -9.2375 2.2384 18 1 0.7195 -9.3778 1.2616 19 1 2.1888 -10.5749 2.7745 20 1 1.3987 -8.3567 3.3537 21 6 2.9142 -2.0182 3.4222 22 6 4.3858 -2.2097 3.0504 23 1 4.5868 -1.7782 2.0698 24 6 5.2997 -1.5617 4.1207 25 6 6.6026 -2.3881 3.9337 26 6 6.0569 -3.7820 3.5562 27 8 4.7250 -3.6055 3.0598 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 0.7016 -4.2285 2.1178 38 1 1.6122 -4.3031 3.6455 39 1 1.7713 -6.6861 2.3968 40 1 4.1009 -10.2277 0.8477 41 1 2.6843 -0.9533 3.4593 42 1 2.7250 -2.4650 4.3984 43 1 5.4680 -0.5063 3.9067 44 1 4.8897 -1.6972 5.1215 45 1 7.1712 -2.4326 4.8626 46 1 7.2113 -1.9784 3.1276 47 1 6.0412 -4.4239 4.4370 48 1 6.6831 -4.2290 2.7840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491897507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:18 Heat of formation + Delta-G solvation = -145.512656 kcal Electronic energy + Delta-G solvation = -30875.248813 eV Core-core repulsion = 26738.369699 eV Total energy + Delta-G solvation = -4136.879115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66249 -39.08721 -38.19585 -36.88883 -35.20666 -33.84597 -33.54773 -31.74623 -31.46479 -30.29449 -27.84751 -27.43544 -27.30176 -25.32637 -24.31791 -21.95264 -21.35602 -21.01786 -19.41593 -18.97410 -18.22643 -17.51253 -16.78074 -16.35950 -16.24323 -15.41398 -15.33013 -15.06025 -14.65671 -14.46333 -14.25261 -14.09564 -13.58992 -13.43981 -13.22709 -12.99262 -12.78910 -12.53122 -12.39773 -12.19698 -12.06155 -11.95226 -11.88341 -11.81065 -11.64715 -11.39567 -11.32273 -11.24685 -11.07137 -10.90899 -10.75978 -10.66690 -10.46604 -10.23487 -9.81840 -9.74884 -9.34185 -9.01921 -8.76625 -7.95304 -7.89983 -6.13133 -3.61777 2.31826 3.14492 3.17079 3.19474 3.26282 3.89438 4.05414 4.25918 4.29896 4.66834 4.74143 4.77293 4.80562 4.92851 4.97732 5.08421 5.20695 5.33205 5.41086 5.41888 5.47648 5.53172 5.57261 5.65157 5.66975 5.69992 5.74545 5.75765 5.78002 5.88984 5.90689 5.91945 5.97029 6.08633 6.23012 6.29998 6.30196 6.35048 6.47328 6.60654 6.69039 7.58059 7.71761 7.76651 8.34145 8.62575 8.81741 9.16899 9.63507 10.08529 11.01047 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.004651 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.207639 B = 6018.411305 C = 7595.614617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.659 3.341 7 O -0.564 6.564 8 N -0.566 5.566 9 C 0.119 3.881 10 C 0.447 3.553 11 O -0.524 6.524 12 N -0.602 5.602 13 C -0.288 4.288 14 H 0.117 0.883 15 C 0.036 3.964 16 N -0.892 5.892 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.270 1.270 21 C 0.121 3.879 22 C 0.067 3.933 23 H 0.068 0.932 24 C -0.151 4.151 25 C -0.153 4.153 26 C 0.049 3.951 27 O -0.320 6.320 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.367 0.633 40 H 0.269 0.731 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 20.437 7.043 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.414 3.586 7 O -0.453 6.453 8 N -0.304 5.304 9 C -0.007 4.007 10 C 0.231 3.769 11 O -0.403 6.403 12 N -0.243 5.243 13 C -0.417 4.417 14 H 0.134 0.866 15 C -0.165 4.165 16 N -0.534 5.534 17 Si 0.705 3.295 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.003 4.003 22 C 0.008 3.992 23 H 0.086 0.914 24 C -0.189 4.189 25 C -0.191 4.191 26 C -0.029 4.029 27 O -0.238 6.238 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.199 0.801 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.673 20.311 6.226 21.559 hybrid contribution -0.776 -0.737 0.687 1.272 sum -4.450 19.574 6.913 21.230 Atomic orbital electron populations 1.22513 0.94296 1.05115 1.02015 1.21991 0.94097 0.91330 0.82652 1.21837 1.02242 0.92766 1.02715 1.22497 1.01770 1.03749 0.96014 1.86258 1.71654 1.24028 1.45991 1.17841 0.78891 0.80205 0.81686 1.90885 1.41909 1.70301 1.42209 1.46085 1.52087 1.10763 1.21421 1.21264 0.98957 0.78883 1.01609 1.19974 0.88509 0.82688 0.85739 1.90585 1.30908 1.73737 1.45028 1.42103 1.23900 1.05414 1.52919 1.19352 1.03944 0.87448 1.30906 0.86576 1.24979 0.97567 0.95916 0.98057 1.69626 1.34608 1.04404 1.44750 0.86704 0.83306 0.79603 0.79925 1.19872 1.20568 1.19596 1.21786 0.89059 0.98092 0.91319 1.23284 0.93638 0.84524 0.97750 0.91405 1.23294 0.95800 1.00001 0.99809 1.23113 0.97680 0.96366 1.01905 1.23037 0.85889 0.95486 0.98458 1.89012 1.28563 1.21092 1.85152 0.92451 0.91436 0.89262 0.91536 0.90414 0.91719 0.89070 0.91578 0.92128 0.88387 0.88700 0.80117 0.92007 0.89025 0.89940 0.90434 0.90632 0.90750 0.91021 0.92324 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 2 C 0.14 1.73 1.13 -90.62 -0.10 1.63 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.18 -2.55 8.37 37.16 0.31 -2.24 16 5 O -0.36 -5.49 8.71 -40.30 -0.35 -5.84 16 6 C 0.66 11.67 7.70 54.06 0.42 12.09 16 7 O -0.56 -11.33 11.46 -19.29 -0.22 -11.55 16 8 N -0.57 -9.45 2.01 -180.86 -0.36 -9.81 16 9 C 0.12 2.10 5.85 -5.20 -0.03 2.07 16 10 C 0.45 10.41 6.90 -10.98 -0.08 10.33 16 11 O -0.52 -13.92 12.29 -19.38 -0.24 -14.16 16 12 N -0.60 -14.84 5.09 -10.96 -0.06 -14.90 16 13 C -0.29 -8.35 10.16 -14.93 -0.15 -8.50 16 14 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 15 C 0.04 1.02 5.50 -17.47 -0.10 0.92 16 16 N -0.89 -26.95 13.96 55.50 0.77 -26.17 16 17 Si 0.88 20.25 27.74 -169.99 -4.71 15.53 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -5.66 6.52 56.52 0.37 -5.30 16 21 C 0.12 1.62 5.20 -4.04 -0.02 1.59 16 22 C 0.07 1.02 3.38 -25.71 -0.09 0.93 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 C -0.15 -1.67 6.58 -24.43 -0.16 -1.83 16 25 C -0.15 -1.84 7.02 -24.73 -0.17 -2.01 16 26 C 0.05 0.79 7.80 37.88 0.30 1.09 16 27 O -0.32 -6.16 6.33 -60.16 -0.38 -6.54 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.68 7.42 -51.93 -0.39 1.29 16 38 H 0.09 1.37 7.89 -51.93 -0.41 0.96 16 39 H 0.37 8.06 5.76 -40.82 -0.24 7.82 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.09 1.02 7.37 -51.92 -0.38 0.64 16 42 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.73 8.06 -51.93 -0.42 0.32 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -35.49 378.84 -6.98 -42.47 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -7.90 Total: 11.97 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 0.76 Total: 13.29 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.36 Total: -50.88 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.19 Total: -38.09 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.71 Total: 15.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.49 -6.98 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491897507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.044 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds