Wall clock time and date at job start Tue Mar 31 2020 15:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46707 * 2 1 4 4 C 1.53001 * 109.47256 * 240.00240 * 2 1 3 5 5 O 1.45194 * 109.47206 * 119.99631 * 2 1 3 6 6 C 1.34644 * 116.99878 * 60.00262 * 5 2 1 7 7 O 1.21511 * 119.99622 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99905 * 179.97438 * 6 5 2 9 9 C 1.46496 * 119.99786 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47106 * 90.00213 * 9 8 6 11 11 O 1.21295 * 119.99584 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99737 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00254 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99943 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00243 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 60.00104 * 17 15 13 19 19 H 1.48498 * 109.47295 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47035 * 300.00609 * 17 15 13 21 21 C 1.46499 * 119.99985 * 0.02562 * 8 6 5 22 22 C 1.52997 * 109.47247 * 269.99690 * 21 8 6 23 23 H 1.09005 * 110.32819 * 307.25137 * 22 21 8 24 24 C 1.54473 * 110.37392 * 185.00484 * 22 21 8 25 25 C 1.54509 * 104.06156 * 217.18903 * 24 22 21 26 26 C 1.54482 * 104.06401 * 359.97438 * 25 24 22 27 27 O 1.44426 * 104.80218 * 23.97987 * 26 25 24 28 28 H 1.09002 * 109.47171 * 300.00217 * 1 2 3 29 29 H 1.08998 * 109.47277 * 60.00306 * 1 2 3 30 30 H 1.08996 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46920 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47429 * 299.99778 * 3 2 1 33 33 H 1.09002 * 109.47482 * 59.99973 * 3 2 1 34 34 H 1.08993 * 109.46618 * 299.99888 * 4 2 1 35 35 H 1.08994 * 109.46774 * 59.99851 * 4 2 1 36 36 H 1.09003 * 109.46843 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47001 * 330.00504 * 9 8 6 38 38 H 1.09000 * 109.47574 * 210.00720 * 9 8 6 39 39 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 40 40 H 0.96999 * 120.00288 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47510 * 29.99803 * 21 8 6 42 42 H 1.09000 * 109.46747 * 149.99494 * 21 8 6 43 43 H 1.09000 * 110.51120 * 335.83375 * 24 22 21 44 44 H 1.08996 * 110.51745 * 98.40641 * 24 22 21 45 45 H 1.09002 * 110.51022 * 118.64624 * 25 24 22 46 46 H 1.09000 * 110.51055 * 241.21438 * 25 24 22 47 47 H 1.08996 * 110.36923 * 142.81169 * 26 25 24 48 48 H 1.09000 * 110.37274 * 265.14830 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6656 2.4167 9 6 1.6740 -4.0667 2.5833 10 6 2.6985 -4.9578 1.9292 11 8 3.6631 -4.4703 1.3787 12 7 2.5433 -6.2963 1.9571 13 6 3.4755 -7.1069 1.3625 14 1 4.3344 -6.6729 0.8723 15 6 3.3158 -8.4869 1.3917 16 7 2.2710 -9.0150 1.9886 17 14 4.5856 -9.5914 0.5810 18 1 5.9105 -9.3701 1.2143 19 1 4.1865 -11.0117 0.7503 20 1 4.6690 -9.2703 -0.8665 21 6 2.9132 -2.0178 3.4229 22 6 4.3852 -2.2082 3.0516 23 1 4.6003 -3.2637 2.8851 24 6 5.2975 -1.6423 4.1624 25 6 6.4833 -1.0187 3.3928 26 6 6.1475 -1.2821 1.9081 27 8 4.7117 -1.4356 1.8762 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6767 -0.2073 -2.1391 36 1 3.1301 -0.7208 -1.2494 37 1 0.7017 -4.2285 2.1178 38 1 1.6121 -4.3030 3.6455 39 1 1.7721 -6.6860 2.3977 40 1 2.1593 -9.9783 2.0086 41 1 2.6827 -0.9531 3.4601 42 1 2.7238 -2.4649 4.3987 43 1 4.7716 -0.8797 4.7369 44 1 5.6429 -2.4421 4.8174 45 1 6.5437 0.0522 3.5869 46 1 7.4172 -1.5089 3.6678 47 1 6.4523 -0.4348 1.2941 48 1 6.6344 -2.1950 1.5652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491897508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:21 Heat of formation + Delta-G solvation = -158.828206 kcal Electronic energy + Delta-G solvation = -30755.367200 eV Core-core repulsion = 26617.910679 eV Total energy + Delta-G solvation = -4137.456521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48356 -39.09220 -38.23607 -36.77735 -35.09128 -33.86839 -33.49743 -31.82618 -31.25145 -30.23478 -27.72273 -27.28644 -27.14972 -25.33036 -24.55208 -22.04448 -21.50105 -20.75690 -19.52912 -18.82022 -17.89199 -17.61858 -16.50152 -16.28385 -15.88361 -15.42615 -15.28321 -15.16970 -14.80339 -14.42933 -14.31502 -14.02248 -13.68066 -13.49958 -13.45720 -13.10910 -12.63475 -12.37500 -12.24715 -12.08815 -12.00234 -11.71673 -11.70271 -11.62904 -11.52918 -11.41852 -11.25120 -11.13009 -11.03636 -10.90906 -10.84815 -10.48264 -10.41847 -10.19839 -10.02142 -9.58870 -9.52445 -9.29589 -8.79925 -7.99139 -7.92475 -6.39068 -3.79432 2.48672 3.21051 3.26938 3.31123 3.37424 3.89881 4.06077 4.20937 4.29423 4.74895 4.86376 4.90941 4.93626 5.03968 5.09233 5.11517 5.23425 5.32784 5.34712 5.53721 5.55417 5.56396 5.66675 5.68755 5.77340 5.77672 5.79094 5.83537 5.90843 5.94725 5.99588 6.00231 6.06322 6.12125 6.15277 6.25437 6.43591 6.52037 6.61464 6.74583 6.84391 7.26645 7.57246 7.76618 8.06742 8.63055 8.83463 9.20515 9.56020 10.07577 10.78413 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.004219 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.336777 B = 6635.225067 C = 7842.675700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.347 6.347 6 C 0.667 3.333 7 O -0.570 6.570 8 N -0.571 5.571 9 C 0.117 3.883 10 C 0.423 3.577 11 O -0.573 6.573 12 N -0.561 5.561 13 C -0.296 4.296 14 H 0.101 0.899 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.127 3.873 22 C 0.054 3.946 23 H 0.097 0.903 24 C -0.151 4.151 25 C -0.152 4.152 26 C 0.046 3.954 27 O -0.347 6.347 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 18.302 4.449 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.261 6.261 6 C 0.423 3.577 7 O -0.460 6.460 8 N -0.308 5.308 9 C -0.009 4.009 10 C 0.208 3.792 11 O -0.457 6.457 12 N -0.198 5.198 13 C -0.426 4.426 14 H 0.119 0.881 15 C -0.178 4.178 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 C 0.003 3.997 22 C -0.005 4.005 23 H 0.115 0.885 24 C -0.189 4.189 25 C -0.190 4.190 26 C -0.031 4.031 27 O -0.265 6.265 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.626 18.414 3.629 18.779 hybrid contribution 0.435 -1.062 -0.028 1.148 sum 1.061 17.352 3.601 17.753 Atomic orbital electron populations 1.22524 0.94658 1.04980 1.01822 1.21913 0.93651 0.91390 0.83049 1.21795 1.02361 0.92857 1.02307 1.22456 1.01902 1.03492 0.95859 1.86341 1.71078 1.23544 1.45187 1.17751 0.78250 0.80388 0.81349 1.90867 1.42245 1.70537 1.42314 1.46076 1.52381 1.10571 1.21812 1.21271 0.99286 0.78825 1.01503 1.20314 0.89043 0.83351 0.86539 1.90541 1.32642 1.74214 1.48293 1.41828 1.23931 1.04133 1.49886 1.19613 1.03956 0.87304 1.31728 0.88118 1.25232 0.97650 0.97345 0.97601 1.69599 1.28268 1.12810 1.43592 0.85948 0.80286 0.78445 0.79707 1.19995 1.20970 1.19954 1.21639 0.88588 0.98634 0.90816 1.23665 0.94139 0.98133 0.84515 0.88497 1.22966 0.96657 1.00637 0.98672 1.22889 0.98644 1.01129 0.96298 1.23280 0.83599 1.00780 0.95478 1.89222 1.19858 1.73348 1.44099 0.92573 0.91637 0.89342 0.91452 0.90750 0.91943 0.89297 0.92002 0.92010 0.88002 0.88609 0.77470 0.91845 0.89464 0.89330 0.91076 0.90727 0.91229 0.91056 0.90014 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 2 C 0.14 1.96 1.13 -90.62 -0.10 1.86 16 3 C -0.14 -1.47 8.85 37.16 0.33 -1.15 16 4 C -0.18 -2.79 8.37 37.16 0.31 -2.48 16 5 O -0.35 -5.88 7.99 -43.18 -0.34 -6.23 16 6 C 0.67 12.80 7.46 54.06 0.40 13.20 16 7 O -0.57 -12.26 11.46 -19.28 -0.22 -12.48 16 8 N -0.57 -10.06 2.02 -180.86 -0.37 -10.43 16 9 C 0.12 2.12 5.93 -5.19 -0.03 2.09 16 10 C 0.42 9.95 7.74 -10.98 -0.08 9.87 16 11 O -0.57 -15.28 13.43 5.54 0.07 -15.21 16 12 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 13 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 14 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 15 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 16 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 17 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 21 C 0.13 1.81 5.08 -4.04 -0.02 1.79 16 22 C 0.05 0.86 3.03 -25.96 -0.08 0.79 16 23 H 0.10 1.93 5.89 -51.93 -0.31 1.62 16 24 C -0.15 -1.79 6.63 -25.17 -0.17 -1.96 16 25 C -0.15 -1.72 7.09 -25.16 -0.18 -1.90 16 26 C 0.05 0.65 7.63 37.93 0.29 0.94 16 27 O -0.35 -6.10 10.37 -39.02 -0.40 -6.51 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.40 5.88 -51.93 -0.31 1.10 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.69 5.88 -51.93 -0.31 1.39 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.84 7.42 -51.93 -0.39 1.46 16 38 H 0.10 1.37 7.89 -51.93 -0.41 0.96 16 39 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 1.16 7.38 -51.93 -0.38 0.77 16 42 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 43 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -33.68 384.15 -6.91 -40.59 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -7.82 Total: 13.17 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 0.74 Total: 13.10 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.30 Total: -48.46 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.90 Total: -40.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.68 -6.91 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491897508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.240 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds