Wall clock time and date at job start Tue Mar 31 2020 15:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47361 * 2 1 4 4 C 1.52998 * 109.47419 * 240.00095 * 2 1 3 5 5 O 1.45202 * 109.47421 * 119.99940 * 2 1 3 6 6 C 1.34630 * 116.99916 * 59.99637 * 5 2 1 7 7 O 1.21510 * 120.00124 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00318 * 180.02562 * 6 5 2 9 9 C 1.47067 * 136.05152 * 359.63378 * 8 6 5 10 10 C 1.53497 * 87.98534 * 153.13820 * 9 8 6 11 11 O 1.42898 * 114.38988 * 139.66779 * 10 9 8 12 12 C 1.42898 * 114.00084 * 116.31163 * 11 10 9 13 13 C 1.50700 * 109.46896 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00378 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99835 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99760 * 180.02562 * 15 13 12 17 17 C 1.53011 * 109.46828 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46904 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00134 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00601 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99822 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47039 * 90.00481 * 22 20 18 24 24 H 1.48500 * 109.47215 * 209.99937 * 22 20 18 25 25 H 1.48498 * 109.47286 * 330.00211 * 22 20 18 26 26 C 1.47066 * 136.06263 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.47173 * 300.00000 * 1 2 3 28 28 H 1.09006 * 109.46940 * 60.00377 * 1 2 3 29 29 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47593 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46397 * 300.00278 * 3 2 1 32 32 H 1.08996 * 109.46866 * 59.99436 * 3 2 1 33 33 H 1.09002 * 109.47068 * 299.99434 * 4 2 1 34 34 H 1.08992 * 109.47463 * 59.99805 * 4 2 1 35 35 H 1.09005 * 109.47649 * 180.02562 * 4 2 1 36 36 H 1.09007 * 113.46858 * 267.91303 * 9 8 6 37 37 H 1.08993 * 113.47208 * 38.35639 * 9 8 6 38 38 H 1.09006 * 114.20377 * 272.47966 * 10 9 8 39 39 H 1.08991 * 109.47569 * 300.00262 * 12 11 10 40 40 H 1.09001 * 109.46902 * 60.00637 * 12 11 10 41 41 H 0.97000 * 120.00124 * 359.97438 * 15 13 12 42 42 H 1.08996 * 109.47126 * 299.98919 * 16 15 13 43 43 H 1.08997 * 109.47508 * 59.99653 * 16 15 13 44 44 H 1.08996 * 109.46826 * 299.99644 * 17 16 15 45 45 H 1.08997 * 109.46917 * 59.99833 * 17 16 15 46 46 H 0.96993 * 120.00542 * 180.02562 * 21 20 18 47 47 H 1.09005 * 113.46156 * 321.64401 * 26 8 6 48 48 H 1.08994 * 113.46837 * 92.02042 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6654 2.4172 9 6 2.8968 -2.3876 3.5994 10 6 2.1088 -3.4764 4.3410 11 8 2.9054 -4.3096 5.1854 12 6 2.5804 -4.2105 6.5734 13 6 3.4767 -5.1269 7.3658 14 8 4.3118 -5.7985 6.7980 15 7 3.3501 -5.2002 8.7057 16 6 4.2217 -6.0907 9.4761 17 6 3.8737 -5.9846 10.9623 18 6 4.7699 -6.9011 11.7547 19 1 5.5130 -7.4997 11.2489 20 6 4.6404 -6.9762 13.1253 21 7 5.4228 -7.7756 13.8170 22 14 3.3545 -5.9414 14.0000 23 1 2.0823 -6.7024 14.0871 24 1 3.8298 -5.6136 15.3682 25 1 3.1291 -4.6856 13.2402 26 6 1.8956 -4.0342 2.9268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 3.9494 -2.6334 3.4586 37 1 2.7478 -1.3887 4.0093 38 1 1.1985 -3.1195 4.8228 39 1 2.7239 -3.1830 6.9077 40 1 1.5405 -4.4999 6.7246 41 1 2.6824 -4.6628 9.1599 42 1 4.0784 -7.1181 9.1416 43 1 5.2617 -5.8011 9.3252 44 1 4.0172 -4.9571 11.2965 45 1 2.8337 -6.2739 11.1134 46 1 5.3314 -7.8287 14.7811 47 1 0.8952 -4.4355 2.7645 48 1 2.6811 -4.7184 2.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495154741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:35 Heat of formation + Delta-G solvation = -120.428259 kcal Electronic energy + Delta-G solvation = -27201.910826 eV Core-core repulsion = 23066.119452 eV Total energy + Delta-G solvation = -4135.791374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31234 -40.12222 -39.30061 -37.32717 -36.44552 -34.99753 -34.42267 -32.86028 -30.65969 -29.76267 -27.85574 -27.79917 -27.76812 -26.56910 -24.58844 -23.21929 -21.38478 -20.88914 -20.42270 -19.63263 -18.32655 -17.66719 -17.11855 -17.01761 -16.90122 -16.38627 -16.25957 -15.59015 -15.31108 -14.79623 -14.73308 -14.36076 -14.23586 -14.06526 -13.92695 -13.65783 -13.24677 -13.06986 -12.91474 -12.78578 -12.65327 -12.60987 -12.33446 -12.32965 -12.07573 -11.79724 -11.74009 -11.57410 -11.53278 -11.23438 -10.78426 -10.45867 -10.44293 -10.32048 -10.00573 -9.95511 -9.55894 -9.34105 -9.27142 -8.69628 -8.60271 -6.14037 -4.14635 1.46803 2.41932 2.79353 2.84718 3.22188 3.29522 3.30974 3.34832 3.76571 3.91142 4.27067 4.30602 4.32676 4.34352 4.46006 4.61586 4.74337 4.83985 4.95227 4.98276 5.00858 5.03680 5.10668 5.13412 5.17114 5.18678 5.25533 5.30484 5.35245 5.42112 5.43075 5.56798 5.85836 5.89117 6.03330 6.08217 6.15269 6.50581 6.61923 6.68341 7.08448 7.18003 7.22951 7.62518 7.78934 7.91850 8.39183 8.47157 8.90289 9.45678 10.98965 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.001551 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.794489 B =18049.880079 C =18357.468777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.687 3.313 7 O -0.564 6.564 8 N -0.634 5.634 9 C 0.086 3.914 10 C 0.050 3.950 11 O -0.337 6.337 12 C 0.041 3.959 13 C 0.506 3.494 14 O -0.525 6.525 15 N -0.725 5.725 16 C 0.131 3.869 17 C -0.022 4.022 18 C -0.524 4.524 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 C 0.129 3.871 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.397 0.603 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.022 0.978 45 H 0.018 0.982 46 H 0.265 0.735 47 H 0.090 0.910 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 19.396 -26.248 34.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.444 3.556 7 O -0.453 6.453 8 N -0.378 5.378 9 C -0.037 4.037 10 C -0.010 4.010 11 O -0.253 6.253 12 C -0.039 4.039 13 C 0.290 3.710 14 O -0.401 6.401 15 N -0.377 5.377 16 C 0.009 3.991 17 C -0.060 4.060 18 C -0.563 4.563 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.710 3.290 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.191 1.191 26 C 0.008 3.992 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.311 18.733 -27.054 34.796 hybrid contribution -1.099 0.952 0.883 1.701 sum -12.411 19.684 -26.171 35.021 Atomic orbital electron populations 1.22526 0.93889 1.05075 1.02597 1.22129 0.94458 0.91565 0.81986 1.21864 1.02364 0.92331 1.03210 1.22523 1.01677 1.03466 0.96466 1.86319 1.71336 1.23270 1.46541 1.17071 0.78565 0.80359 0.79631 1.90919 1.41737 1.70725 1.41953 1.47622 1.53604 1.14791 1.21809 1.23630 0.97209 1.00472 0.82383 1.23872 0.94848 0.91857 0.90426 1.88079 1.58221 1.63556 1.15445 1.22407 0.99049 0.99963 0.82434 1.20088 0.84681 0.83422 0.82836 1.90737 1.35579 1.43850 1.69907 1.46223 1.39387 1.45923 1.06146 1.21544 0.93058 0.92523 0.91940 1.19800 0.97492 0.98017 0.90655 1.20914 1.19124 1.24432 0.91813 0.90586 1.25001 0.95774 0.95050 0.97428 1.69899 1.38675 1.37754 1.07234 0.86749 0.81981 0.81222 0.79075 1.20236 1.21262 1.19105 1.23193 1.03938 0.83191 0.88883 0.92107 0.91004 0.89417 0.91383 0.89998 0.91411 0.89435 0.90981 0.92080 0.88273 0.89608 0.87254 0.89926 0.89894 0.77015 0.91790 0.91778 0.95950 0.96386 0.92514 0.89185 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.37 37.16 0.31 -1.06 16 2 C 0.14 1.07 1.13 -90.62 -0.10 0.96 16 3 C -0.14 -0.75 8.85 37.16 0.33 -0.42 16 4 C -0.18 -1.43 8.37 37.16 0.31 -1.12 16 5 O -0.36 -3.64 9.91 -40.30 -0.40 -4.04 16 6 C 0.69 7.76 8.26 54.06 0.45 8.21 16 7 O -0.56 -7.45 12.66 -19.28 -0.24 -7.69 16 8 N -0.63 -6.04 3.69 -191.10 -0.71 -6.74 16 9 C 0.09 0.65 8.50 -8.51 -0.07 0.58 16 10 C 0.05 0.37 4.66 -26.21 -0.12 0.24 16 11 O -0.34 -3.62 9.93 -55.14 -0.55 -4.16 16 12 C 0.04 0.39 6.26 36.01 0.23 0.62 16 13 C 0.51 7.54 7.91 -10.98 -0.09 7.45 16 14 O -0.53 -10.42 16.50 -14.35 -0.24 -10.66 16 15 N -0.72 -10.76 5.56 -60.29 -0.33 -11.10 16 16 C 0.13 2.55 5.61 -4.04 -0.02 2.53 16 17 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 18 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 22 Si 0.88 20.49 27.47 -169.99 -4.67 15.83 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 26 C 0.13 1.06 8.46 -8.50 -0.07 0.99 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.86 5.88 -51.93 -0.31 0.56 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.89 5.88 -51.93 -0.31 0.58 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.56 7.88 -51.93 -0.41 0.15 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 4.57 8.47 -40.82 -0.35 4.22 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 45 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -35.46 397.41 -7.84 -43.30 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -8.06 Total: -0.13 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 0.60 Total: 5.54 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.27 Total: -43.97 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.43 Total: -26.55 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.46 -7.84 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495154741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.127 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds