Wall clock time and date at job start Tue Mar 31 2020 15:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47361 * 2 1 4 4 C 1.52998 * 109.47419 * 240.00095 * 2 1 3 5 5 O 1.45202 * 109.47421 * 119.99940 * 2 1 3 6 6 C 1.34630 * 116.99916 * 59.99637 * 5 2 1 7 7 O 1.21510 * 120.00124 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00318 * 180.02562 * 6 5 2 9 9 C 1.47067 * 136.05152 * 359.63378 * 8 6 5 10 10 C 1.53497 * 87.98534 * 153.13820 * 9 8 6 11 11 O 1.42898 * 114.38988 * 139.66779 * 10 9 8 12 12 C 1.42898 * 114.00084 * 116.31163 * 11 10 9 13 13 C 1.50700 * 109.46896 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00378 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99835 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99760 * 180.02562 * 15 13 12 17 17 C 1.53011 * 109.46828 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46904 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00134 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00601 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99822 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47039 * 90.00481 * 22 20 18 24 24 H 1.48500 * 109.47215 * 209.99937 * 22 20 18 25 25 H 1.48498 * 109.47286 * 330.00211 * 22 20 18 26 26 C 1.47066 * 136.06263 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.47173 * 300.00000 * 1 2 3 28 28 H 1.09006 * 109.46940 * 60.00377 * 1 2 3 29 29 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47593 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46397 * 300.00278 * 3 2 1 32 32 H 1.08996 * 109.46866 * 59.99436 * 3 2 1 33 33 H 1.09002 * 109.47068 * 299.99434 * 4 2 1 34 34 H 1.08992 * 109.47463 * 59.99805 * 4 2 1 35 35 H 1.09005 * 109.47649 * 180.02562 * 4 2 1 36 36 H 1.09007 * 113.46858 * 267.91303 * 9 8 6 37 37 H 1.08993 * 113.47208 * 38.35639 * 9 8 6 38 38 H 1.09006 * 114.20377 * 272.47966 * 10 9 8 39 39 H 1.08991 * 109.47569 * 300.00262 * 12 11 10 40 40 H 1.09001 * 109.46902 * 60.00637 * 12 11 10 41 41 H 0.97000 * 120.00124 * 359.97438 * 15 13 12 42 42 H 1.08996 * 109.47126 * 299.98919 * 16 15 13 43 43 H 1.08997 * 109.47508 * 59.99653 * 16 15 13 44 44 H 1.08996 * 109.46826 * 299.99644 * 17 16 15 45 45 H 1.08997 * 109.46917 * 59.99833 * 17 16 15 46 46 H 0.96993 * 120.00542 * 180.02562 * 21 20 18 47 47 H 1.09005 * 113.46156 * 321.64401 * 26 8 6 48 48 H 1.08994 * 113.46837 * 92.02042 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6654 2.4172 9 6 2.8968 -2.3876 3.5994 10 6 2.1088 -3.4764 4.3410 11 8 2.9054 -4.3096 5.1854 12 6 2.5804 -4.2105 6.5734 13 6 3.4767 -5.1269 7.3658 14 8 4.3118 -5.7985 6.7980 15 7 3.3501 -5.2002 8.7057 16 6 4.2217 -6.0907 9.4761 17 6 3.8737 -5.9846 10.9623 18 6 4.7699 -6.9011 11.7547 19 1 5.5130 -7.4997 11.2489 20 6 4.6404 -6.9762 13.1253 21 7 5.4228 -7.7756 13.8170 22 14 3.3545 -5.9414 14.0000 23 1 2.0823 -6.7024 14.0871 24 1 3.8298 -5.6136 15.3682 25 1 3.1291 -4.6856 13.2402 26 6 1.8956 -4.0342 2.9268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 3.9494 -2.6334 3.4586 37 1 2.7478 -1.3887 4.0093 38 1 1.1985 -3.1195 4.8228 39 1 2.7239 -3.1830 6.9077 40 1 1.5405 -4.4999 6.7246 41 1 2.6824 -4.6628 9.1599 42 1 4.0784 -7.1181 9.1416 43 1 5.2617 -5.8011 9.3252 44 1 4.0172 -4.9571 11.2965 45 1 2.8337 -6.2739 11.1134 46 1 5.3314 -7.8287 14.7811 47 1 0.8952 -4.4355 2.7645 48 1 2.6811 -4.7184 2.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495154741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:34 Heat of formation + Delta-G solvation = -146.578533 kcal Electronic energy + Delta-G solvation = -27203.044787 eV Core-core repulsion = 23066.119452 eV Total energy + Delta-G solvation = -4136.925335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02897 -40.92224 -40.36723 -38.10584 -37.26883 -36.51877 -35.05686 -34.77697 -32.27057 -30.60699 -28.84543 -28.38723 -28.31513 -27.17470 -26.26775 -23.89638 -22.64652 -22.02094 -21.62499 -20.33908 -19.04485 -18.95282 -18.33127 -18.11775 -17.80270 -17.20462 -17.09826 -16.49036 -16.35922 -16.17277 -15.84747 -15.46855 -15.26837 -15.03485 -14.69689 -14.62579 -14.52837 -14.16706 -13.96034 -13.55626 -13.36302 -13.31801 -13.17698 -13.01651 -12.93430 -12.89260 -12.70870 -12.44335 -12.36451 -12.21299 -12.15435 -12.10545 -11.73231 -11.49131 -11.43781 -11.21620 -10.79164 -10.76641 -10.60447 -10.02758 -9.98890 -8.27747 -6.35493 0.78637 1.41690 1.44735 1.55832 1.61198 1.66033 1.93046 2.39385 2.69762 3.00029 3.07643 3.22961 3.71893 3.77024 3.78067 3.81070 3.92326 4.12944 4.16228 4.30652 4.38050 4.39607 4.43359 4.48275 4.51338 4.57912 4.59937 4.61593 4.74613 4.75977 4.78123 4.81068 4.86120 4.86916 5.11420 5.17788 5.25576 5.30252 5.42330 5.44017 5.45739 5.66596 6.03212 6.24315 6.50297 6.66079 6.74403 7.13443 7.29174 7.33954 8.89147 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.001551 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.794489 B =18049.880079 C =18357.468777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.680 3.320 7 O -0.591 6.591 8 N -0.638 5.638 9 C 0.087 3.913 10 C 0.065 3.935 11 O -0.368 6.368 12 C 0.050 3.950 13 C 0.501 3.499 14 O -0.585 6.585 15 N -0.712 5.712 16 C 0.145 3.855 17 C -0.013 4.013 18 C -0.542 4.542 19 H 0.026 0.974 20 C 0.002 3.998 21 N -0.953 5.953 22 Si 0.961 3.039 23 H -0.265 1.265 24 H -0.289 1.289 25 H -0.232 1.232 26 C 0.120 3.880 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.418 0.582 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.267 0.733 47 H 0.096 0.904 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 22.974 -26.207 37.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.437 3.563 7 O -0.483 6.483 8 N -0.382 5.382 9 C -0.036 4.036 10 C 0.006 3.994 11 O -0.285 6.285 12 C -0.029 4.029 13 C 0.288 3.712 14 O -0.464 6.464 15 N -0.366 5.366 16 C 0.021 3.979 17 C -0.050 4.050 18 C -0.580 4.580 19 H 0.044 0.956 20 C -0.195 4.195 21 N -0.593 5.593 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.215 1.215 25 H -0.154 1.154 26 C -0.001 4.001 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.161 0.839 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.255 0.745 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.114 0.886 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.213 22.353 -27.020 37.838 hybrid contribution -0.105 -0.241 0.781 0.824 sum -14.318 22.113 -26.239 37.181 Atomic orbital electron populations 1.22471 0.93658 1.03636 1.03813 1.22482 0.94851 0.92700 0.81267 1.21887 1.02351 0.90489 1.04495 1.22483 1.01545 1.02135 0.97621 1.86326 1.71386 1.22700 1.47544 1.17293 0.78524 0.80746 0.79762 1.90904 1.43016 1.71342 1.43009 1.47760 1.53464 1.15238 1.21734 1.23713 0.96656 1.01677 0.81550 1.23923 0.95379 0.90703 0.89380 1.88046 1.59493 1.64626 1.16320 1.22477 0.98996 1.00215 0.81169 1.21159 0.84366 0.83100 0.82599 1.90719 1.38328 1.46432 1.70936 1.45912 1.39036 1.45272 1.06360 1.21008 0.92965 0.92471 0.91469 1.19657 0.97040 0.97353 0.90978 1.21295 1.19101 1.24905 0.92693 0.95587 1.26122 0.98483 0.96527 0.98331 1.70085 1.41293 1.40171 1.07712 0.85511 0.78385 0.80372 0.77409 1.19045 1.21547 1.15443 1.23307 1.04027 0.82839 0.89897 0.91683 0.88969 0.92085 0.91410 0.87803 0.91017 0.92202 0.88831 0.92184 0.89052 0.87682 0.83930 0.85995 0.86045 0.74459 0.94021 0.93974 0.94133 0.94333 0.92398 0.88559 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.37 71.98 0.60 -1.88 16 2 C 0.12 1.80 1.13 -10.79 -0.01 1.79 16 3 C -0.14 -1.14 8.85 71.98 0.64 -0.50 16 4 C -0.18 -2.71 8.37 71.98 0.60 -2.11 16 5 O -0.36 -7.10 9.91 -55.40 -0.55 -7.65 16 6 C 0.68 15.22 8.26 129.79 1.07 16.29 16 7 O -0.59 -16.02 12.66 19.81 0.25 -15.77 16 8 N -0.64 -11.55 3.69 -989.42 -3.65 -15.20 16 9 C 0.09 1.13 8.50 83.18 0.71 1.83 16 10 C 0.07 0.77 4.66 30.93 0.14 0.91 16 11 O -0.37 -6.96 9.93 -129.94 -1.29 -8.25 16 12 C 0.05 0.74 6.26 71.24 0.45 1.19 16 13 C 0.50 13.97 7.91 87.66 0.69 14.66 16 14 O -0.58 -23.41 16.50 16.00 0.26 -23.15 16 15 N -0.71 -19.43 5.56 -463.05 -2.57 -22.00 16 16 C 0.14 5.62 5.61 86.38 0.48 6.10 16 17 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 18 C -0.54 -30.34 9.66 25.60 0.25 -30.09 16 19 H 0.03 1.65 7.99 -2.91 -0.02 1.62 16 20 C 0.00 0.13 5.47 84.65 0.46 0.59 16 21 N -0.95 -58.86 13.96 21.44 0.30 -58.56 16 22 Si 0.96 40.94 27.47 68.60 1.88 42.82 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.23 -8.53 6.54 99.48 0.65 -7.87 16 26 C 0.12 1.86 8.46 83.18 0.70 2.56 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 1.21 5.88 -2.38 -0.01 1.19 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 1.26 5.88 -2.39 -0.01 1.24 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.14 0.76 7.88 -2.38 -0.02 0.75 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.42 7.80 8.47 -92.71 -0.79 7.01 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 45 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -83.29 397.41 1.66 -81.63 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.11 Total: 15.18 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.92 Total: 10.94 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -5.92 Total: -95.76 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -1.33 Total: -54.81 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.82 kcal Total: -83.29 1.66 -81.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495154741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.952 kcal (2) G-P(sol) polarization free energy of solvation -83.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds