Wall clock time and date at job start Tue Mar 31 2020 15:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 114.00034 * 2 1 4 4 C 1.52991 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47456 * 184.99791 * 4 3 2 6 6 N 1.46501 * 109.46966 * 64.99903 * 4 3 2 7 7 C 1.34780 * 119.99712 * 85.00028 * 6 4 3 8 8 O 1.21501 * 120.00046 * 0.02562 * 7 6 4 9 9 O 1.34644 * 119.99862 * 179.97438 * 7 6 4 10 10 C 1.45201 * 116.99867 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47000 * 60.00419 * 10 9 7 12 12 C 1.52996 * 109.46947 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47243 * 300.00219 * 10 9 7 14 14 C 1.50696 * 109.47361 * 305.00208 * 4 3 2 15 15 O 1.21295 * 120.00344 * 120.00166 * 14 4 3 16 16 N 1.34772 * 120.00148 * 299.99843 * 14 4 3 17 17 C 1.37095 * 120.00598 * 179.97438 * 16 14 4 18 18 H 1.08001 * 120.00613 * 222.98022 * 17 16 14 19 19 C 1.38955 * 120.00032 * 42.98075 * 17 16 14 20 20 N 1.31415 * 119.99487 * 18.90159 * 19 17 16 21 21 Si 1.86789 * 120.00299 * 198.90012 * 19 17 16 22 22 H 1.48508 * 109.47313 * 59.99917 * 21 19 17 23 23 H 1.48500 * 109.47440 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47361 * 300.00135 * 21 19 17 25 25 C 1.46505 * 119.99952 * 359.97438 * 16 14 4 26 26 C 1.52994 * 117.50067 * 186.64689 * 25 16 14 27 27 C 1.52999 * 117.49867 * 117.98646 * 25 16 14 28 28 H 1.09003 * 109.46976 * 59.99992 * 1 2 3 29 29 H 1.08997 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47608 * 300.00320 * 1 2 3 31 31 H 1.09001 * 109.46691 * 59.99371 * 3 2 1 32 32 H 1.08998 * 109.46957 * 300.00223 * 3 2 1 33 33 H 0.96998 * 120.00227 * 264.99501 * 6 4 3 34 34 H 1.09003 * 109.47075 * 59.99687 * 11 10 9 35 35 H 1.09001 * 109.46979 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47021 * 299.99670 * 11 10 9 37 37 H 1.09002 * 109.47102 * 60.00486 * 12 10 9 38 38 H 1.08998 * 109.47332 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47201 * 300.00358 * 12 10 9 40 40 H 1.09003 * 109.47218 * 60.00061 * 13 10 9 41 41 H 1.09001 * 109.47318 * 179.97438 * 13 10 9 42 42 H 1.09003 * 109.47244 * 300.00410 * 13 10 9 43 43 H 0.97005 * 119.99749 * 174.92250 * 20 19 17 44 44 H 1.08996 * 115.54932 * 332.32156 * 25 16 14 45 45 H 1.09002 * 117.50326 * 0.02562 * 26 25 16 46 46 H 1.09007 * 117.49786 * 145.02381 * 26 25 16 47 47 H 1.08997 * 117.50128 * 214.98680 * 27 25 16 48 48 H 1.09003 * 117.49648 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1765 0.0902 6 7 3.9766 0.5639 -1.2509 7 6 4.1662 1.3222 -2.3489 8 8 3.9717 2.5206 -2.3006 9 8 4.5722 0.7518 -3.4990 10 6 4.7554 1.6293 -4.6413 11 6 5.8131 2.6840 -4.3097 12 6 5.2145 0.8075 -5.8473 13 6 3.4310 2.3211 -4.9705 14 6 3.9714 0.3328 1.1648 15 8 4.5899 -0.6920 0.9684 16 7 3.6742 0.7096 2.4241 17 6 4.0703 -0.0656 3.4832 18 1 3.3899 -0.2509 4.3012 19 6 5.3473 -0.6130 3.5043 20 7 6.2891 -0.1132 2.7360 21 14 5.7254 -2.0590 4.6247 22 1 4.8501 -3.2042 4.2674 23 1 7.1476 -2.4536 4.4609 24 1 5.4788 -1.6692 6.0363 25 6 2.9277 1.9476 2.6615 26 6 2.7561 2.4020 4.1123 27 6 1.5629 1.8301 3.3427 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.1323 -0.3927 -1.2893 34 1 6.7566 2.1911 -4.0751 35 1 5.9503 3.3430 -5.1670 36 1 5.4856 3.2694 -3.4506 37 1 4.4606 0.0564 -6.0834 38 1 5.3516 1.4661 -6.7049 39 1 6.1579 0.3142 -5.6130 40 1 3.1035 2.9066 -4.1114 41 1 3.5686 2.9802 -5.8277 42 1 2.6775 1.5698 -5.2066 43 1 7.1978 -0.4460 2.8038 44 1 3.0464 2.7209 1.9026 45 1 3.1989 1.7801 4.8903 46 1 2.7615 3.4744 4.3078 47 1 0.7837 2.5263 3.0323 48 1 1.2201 0.8315 3.6140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495678250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:39 Heat of formation + Delta-G solvation = -111.031999 kcal Electronic energy + Delta-G solvation = -30643.924089 eV Core-core repulsion = 26508.540167 eV Total energy + Delta-G solvation = -4135.383921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56055 -39.20272 -37.37334 -36.87892 -36.10856 -34.27874 -33.70491 -32.69372 -31.12159 -29.40887 -27.40906 -27.33777 -26.29909 -24.89559 -23.70237 -21.99360 -21.73754 -20.92234 -19.82426 -19.38370 -18.19902 -16.56181 -16.38846 -16.20410 -15.97636 -15.76853 -15.41262 -15.00609 -14.61454 -14.52763 -14.40293 -14.19789 -13.70628 -13.61323 -13.28426 -13.16271 -12.51073 -12.44809 -12.35227 -12.05948 -11.93159 -11.85958 -11.78007 -11.54975 -11.33800 -11.21060 -11.12915 -10.93955 -10.90083 -10.83530 -10.61956 -10.23847 -10.20948 -10.03543 -9.82659 -9.79266 -9.26792 -8.88020 -8.65829 -8.05106 -7.06902 -6.12677 -3.87435 2.44881 3.16862 3.30714 3.38305 3.41817 4.03521 4.09401 4.23271 4.47087 4.68692 4.74937 4.78296 4.80161 4.93261 5.16851 5.35728 5.43983 5.46182 5.49633 5.52834 5.55286 5.58969 5.65572 5.66285 5.67757 5.75409 5.77239 5.86799 5.88567 5.91720 5.95996 5.97881 6.03779 6.17395 6.30554 6.36056 6.39901 6.63091 6.69128 6.86591 6.90966 7.46768 7.60284 7.91623 8.23118 8.74145 9.01338 9.09766 9.61311 10.20061 10.96239 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.004191 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.984945 B = 6678.699323 C = 7673.360554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.372 6.372 3 C 0.049 3.951 4 C 0.151 3.849 5 H 0.111 0.889 6 N -0.675 5.675 7 C 0.653 3.347 8 O -0.582 6.582 9 O -0.364 6.364 10 C 0.136 3.864 11 C -0.184 4.184 12 C -0.140 4.140 13 C -0.182 4.182 14 C 0.492 3.508 15 O -0.521 6.521 16 N -0.417 5.417 17 C -0.347 4.347 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.831 5.831 21 Si 0.915 3.085 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.068 3.932 26 C -0.172 4.172 27 C -0.206 4.206 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.265 0.735 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 5.753 -10.917 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.291 6.291 3 C -0.029 4.029 4 C 0.043 3.957 5 H 0.129 0.871 6 N -0.334 5.334 7 C 0.406 3.594 8 O -0.473 6.473 9 O -0.278 6.278 10 C 0.099 3.901 11 C -0.241 4.241 12 C -0.197 4.197 13 C -0.239 4.239 14 C 0.277 3.723 15 O -0.398 6.398 16 N -0.137 5.137 17 C -0.474 4.474 18 H 0.097 0.903 19 C -0.137 4.137 20 N -0.464 5.464 21 Si 0.742 3.258 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.204 1.204 25 C -0.038 4.038 26 C -0.210 4.210 27 C -0.245 4.245 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.937 5.551 -11.181 14.281 hybrid contribution 0.115 -0.599 0.479 0.776 sum -6.821 4.952 -10.701 13.622 Atomic orbital electron populations 1.22663 0.81916 1.02296 0.99342 1.88011 1.18823 1.26981 1.95254 1.23158 0.92820 0.85726 1.01235 1.20875 0.92521 0.98693 0.83660 0.87102 1.44320 1.69565 1.12479 1.07012 1.17976 0.76482 0.84096 0.80800 1.90833 1.58026 1.13546 1.84905 1.86320 1.80839 1.41927 1.18762 1.21989 0.96013 0.89365 0.82766 1.22520 0.98376 0.99171 1.04019 1.21847 1.02374 1.00378 0.95140 1.22508 0.96351 1.01360 1.03700 1.19229 0.83727 0.86557 0.82743 1.90530 1.40446 1.25716 1.83100 1.42536 1.49677 1.17224 1.04279 1.18791 0.97546 1.29727 1.01312 0.90314 1.25218 0.95099 0.97481 0.95910 1.69824 1.01020 1.39085 1.36492 0.86245 0.77362 0.82774 0.79448 1.19914 1.21235 1.20412 1.21783 0.95237 0.90995 0.95780 1.23123 1.01454 1.00022 0.96365 1.23347 0.91970 1.02257 1.06960 0.94864 0.90026 0.94161 0.90635 0.93151 0.74590 0.92130 0.91496 0.89180 0.91580 0.90413 0.91449 0.89272 0.91477 0.92347 0.92462 0.87938 0.87313 0.89709 0.89872 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -6.82 10.13 -35.23 -0.36 -7.18 16 3 C 0.05 0.84 5.33 37.15 0.20 1.04 16 4 C 0.15 3.07 2.00 -69.09 -0.14 2.93 16 5 H 0.11 2.25 7.00 -51.93 -0.36 1.89 16 6 N -0.67 -13.36 4.90 -59.87 -0.29 -13.65 16 7 C 0.65 12.11 8.02 54.06 0.43 12.54 16 8 O -0.58 -11.06 11.54 -19.27 -0.22 -11.28 16 9 O -0.36 -6.05 9.94 -40.34 -0.40 -6.45 16 10 C 0.14 1.78 1.13 -90.62 -0.10 1.68 16 11 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16 12 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 13 C -0.18 -2.20 8.37 37.16 0.31 -1.89 16 14 C 0.49 12.24 5.96 -10.99 -0.07 12.18 16 15 O -0.52 -14.96 13.49 5.54 0.07 -14.89 16 16 N -0.42 -10.12 2.85 -107.73 -0.31 -10.43 16 17 C -0.35 -9.25 7.86 -14.93 -0.12 -9.37 16 18 H 0.08 2.03 7.35 -52.49 -0.39 1.64 16 19 C 0.07 2.04 4.36 -17.46 -0.08 1.97 16 20 N -0.83 -24.32 11.67 55.50 0.65 -23.67 16 21 Si 0.91 21.76 29.60 -169.99 -5.03 16.73 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.07 1.32 4.31 -67.93 -0.29 1.03 16 26 C -0.17 -2.98 9.80 -26.70 -0.26 -3.25 16 27 C -0.21 -3.36 9.44 -26.70 -0.25 -3.61 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.22 4.49 -51.93 -0.23 0.99 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.42 8.57 7.90 -40.82 -0.32 8.25 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.27 7.49 8.32 -40.82 -0.34 7.15 16 44 H 0.10 1.80 6.24 -51.93 -0.32 1.47 16 45 H 0.11 2.10 6.80 -51.93 -0.35 1.75 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -32.79 384.11 -6.36 -39.14 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -7.65 Total: 12.19 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 1.39 Total: 13.70 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.05 Total: -47.76 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.91 Total: -39.79 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.79 -6.36 -39.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495678250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.887 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds