Wall clock time and date at job start Tue Mar 31 2020 15:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 114.00034 * 2 1 4 4 C 1.52991 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47456 * 184.99791 * 4 3 2 6 6 N 1.46501 * 109.46966 * 64.99903 * 4 3 2 7 7 C 1.34780 * 119.99712 * 85.00028 * 6 4 3 8 8 O 1.21501 * 120.00046 * 0.02562 * 7 6 4 9 9 O 1.34644 * 119.99862 * 179.97438 * 7 6 4 10 10 C 1.45201 * 116.99867 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47000 * 60.00419 * 10 9 7 12 12 C 1.52996 * 109.46947 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47243 * 300.00219 * 10 9 7 14 14 C 1.50696 * 109.47361 * 305.00208 * 4 3 2 15 15 O 1.21295 * 120.00344 * 120.00166 * 14 4 3 16 16 N 1.34772 * 120.00148 * 299.99843 * 14 4 3 17 17 C 1.37095 * 120.00598 * 179.97438 * 16 14 4 18 18 H 1.08001 * 120.00613 * 222.98022 * 17 16 14 19 19 C 1.38955 * 120.00032 * 42.98075 * 17 16 14 20 20 N 1.31415 * 119.99487 * 18.90159 * 19 17 16 21 21 Si 1.86789 * 120.00299 * 198.90012 * 19 17 16 22 22 H 1.48508 * 109.47313 * 59.99917 * 21 19 17 23 23 H 1.48500 * 109.47440 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47361 * 300.00135 * 21 19 17 25 25 C 1.46505 * 119.99952 * 359.97438 * 16 14 4 26 26 C 1.52994 * 117.50067 * 186.64689 * 25 16 14 27 27 C 1.52999 * 117.49867 * 117.98646 * 25 16 14 28 28 H 1.09003 * 109.46976 * 59.99992 * 1 2 3 29 29 H 1.08997 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47608 * 300.00320 * 1 2 3 31 31 H 1.09001 * 109.46691 * 59.99371 * 3 2 1 32 32 H 1.08998 * 109.46957 * 300.00223 * 3 2 1 33 33 H 0.96998 * 120.00227 * 264.99501 * 6 4 3 34 34 H 1.09003 * 109.47075 * 59.99687 * 11 10 9 35 35 H 1.09001 * 109.46979 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47021 * 299.99670 * 11 10 9 37 37 H 1.09002 * 109.47102 * 60.00486 * 12 10 9 38 38 H 1.08998 * 109.47332 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47201 * 300.00358 * 12 10 9 40 40 H 1.09003 * 109.47218 * 60.00061 * 13 10 9 41 41 H 1.09001 * 109.47318 * 179.97438 * 13 10 9 42 42 H 1.09003 * 109.47244 * 300.00410 * 13 10 9 43 43 H 0.97005 * 119.99749 * 174.92250 * 20 19 17 44 44 H 1.08996 * 115.54932 * 332.32156 * 25 16 14 45 45 H 1.09002 * 117.50326 * 0.02562 * 26 25 16 46 46 H 1.09007 * 117.49786 * 145.02381 * 26 25 16 47 47 H 1.08997 * 117.50128 * 214.98680 * 27 25 16 48 48 H 1.09003 * 117.49648 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1765 0.0902 6 7 3.9766 0.5639 -1.2509 7 6 4.1662 1.3222 -2.3489 8 8 3.9717 2.5206 -2.3006 9 8 4.5722 0.7518 -3.4990 10 6 4.7554 1.6293 -4.6413 11 6 5.8131 2.6840 -4.3097 12 6 5.2145 0.8075 -5.8473 13 6 3.4310 2.3211 -4.9705 14 6 3.9714 0.3328 1.1648 15 8 4.5899 -0.6920 0.9684 16 7 3.6742 0.7096 2.4241 17 6 4.0703 -0.0656 3.4832 18 1 3.3899 -0.2509 4.3012 19 6 5.3473 -0.6130 3.5043 20 7 6.2891 -0.1132 2.7360 21 14 5.7254 -2.0590 4.6247 22 1 4.8501 -3.2042 4.2674 23 1 7.1476 -2.4536 4.4609 24 1 5.4788 -1.6692 6.0363 25 6 2.9277 1.9476 2.6615 26 6 2.7561 2.4020 4.1123 27 6 1.5629 1.8301 3.3427 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.1323 -0.3927 -1.2893 34 1 6.7566 2.1911 -4.0751 35 1 5.9503 3.3430 -5.1670 36 1 5.4856 3.2694 -3.4506 37 1 4.4606 0.0564 -6.0834 38 1 5.3516 1.4661 -6.7049 39 1 6.1579 0.3142 -5.6130 40 1 3.1035 2.9066 -4.1114 41 1 3.5686 2.9802 -5.8277 42 1 2.6775 1.5698 -5.2066 43 1 7.1978 -0.4460 2.8038 44 1 3.0464 2.7209 1.9026 45 1 3.1989 1.7801 4.8903 46 1 2.7615 3.4744 4.3078 47 1 0.7837 2.5263 3.0323 48 1 1.2201 0.8315 3.6140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495678250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:39 Heat of formation + Delta-G solvation = -134.330285 kcal Electronic energy + Delta-G solvation = -30644.934378 eV Core-core repulsion = 26508.540167 eV Total energy + Delta-G solvation = -4136.394211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94117 -40.81890 -38.80413 -38.21811 -37.72027 -35.77098 -34.96522 -34.55036 -32.96034 -30.94901 -28.32917 -28.27159 -27.62186 -26.68032 -25.15218 -23.47530 -23.07745 -22.48843 -21.15574 -21.11209 -19.59948 -18.13421 -17.89208 -17.84636 -17.33185 -17.11565 -16.82156 -16.57777 -16.16850 -16.05573 -15.68284 -15.46283 -15.28909 -15.05205 -14.78639 -14.44786 -14.01313 -13.71340 -13.52762 -13.31882 -13.13227 -13.04421 -12.87478 -12.84764 -12.81819 -12.75233 -12.68201 -12.42548 -12.28621 -12.21810 -12.18926 -12.09832 -11.64270 -11.37074 -11.24000 -11.12011 -10.74763 -10.59960 -10.28203 -9.91311 -8.97634 -8.19331 -5.96131 1.11251 1.37944 1.47076 1.50108 1.73006 2.22445 2.37043 2.81439 2.99530 3.12595 3.15870 3.34085 3.78241 3.82852 3.84495 3.97591 4.01658 4.07688 4.19457 4.24431 4.36603 4.46732 4.53388 4.57241 4.58931 4.63227 4.64834 4.76547 4.78750 4.85787 4.86887 4.90041 4.90976 4.99952 5.08094 5.21124 5.29257 5.32120 5.38399 5.49479 5.51480 5.55579 6.19233 6.24990 6.40798 7.01215 7.15410 7.31017 7.66731 8.29046 8.89051 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.004191 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.984945 B = 6678.699323 C = 7673.360554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.062 3.938 4 C 0.160 3.840 5 H 0.107 0.893 6 N -0.683 5.683 7 C 0.655 3.345 8 O -0.588 6.588 9 O -0.373 6.373 10 C 0.119 3.881 11 C -0.181 4.181 12 C -0.135 4.135 13 C -0.176 4.176 14 C 0.481 3.519 15 O -0.573 6.573 16 N -0.429 5.429 17 C -0.352 4.352 18 H 0.082 0.918 19 C 0.023 3.977 20 N -0.870 5.870 21 Si 0.970 3.030 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.256 1.256 25 C 0.035 3.965 26 C -0.168 4.168 27 C -0.175 4.175 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.259 0.741 44 H 0.121 0.879 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 7.100 -11.778 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.016 4.016 4 C 0.052 3.948 5 H 0.125 0.875 6 N -0.342 5.342 7 C 0.408 3.592 8 O -0.480 6.480 9 O -0.287 6.287 10 C 0.083 3.917 11 C -0.238 4.238 12 C -0.192 4.192 13 C -0.233 4.233 14 C 0.268 3.732 15 O -0.454 6.454 16 N -0.149 5.149 17 C -0.479 4.479 18 H 0.100 0.900 19 C -0.183 4.183 20 N -0.506 5.506 21 Si 0.795 3.205 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.180 1.180 25 C -0.070 4.070 26 C -0.206 4.206 27 C -0.214 4.214 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.139 0.861 45 H 0.102 0.898 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.903 6.944 -12.020 16.491 hybrid contribution 0.633 -0.970 0.699 1.353 sum -8.269 5.974 -11.321 15.240 Atomic orbital electron populations 1.22891 0.79504 1.03459 1.00909 1.87972 1.21532 1.27457 1.95530 1.23026 0.90377 0.85811 1.02409 1.20710 0.94777 0.97070 0.82226 0.87492 1.44361 1.70209 1.12178 1.07429 1.17960 0.76284 0.83837 0.81073 1.90829 1.58302 1.13667 1.85190 1.86341 1.80369 1.43116 1.18921 1.22526 0.96843 0.89860 0.82444 1.22489 0.97841 0.99259 1.04193 1.21891 1.02121 1.00719 0.94469 1.22453 0.95669 1.01482 1.03731 1.19946 0.82788 0.86477 0.83992 1.90482 1.42664 1.28053 1.84166 1.42709 1.49729 1.18734 1.03712 1.19059 0.97298 1.29944 1.01643 0.90007 1.26010 0.95289 0.99563 0.97443 1.69945 1.01017 1.40756 1.38835 0.85377 0.76545 0.79526 0.79034 1.20797 1.21612 1.17987 1.22087 0.97308 0.89842 0.97802 1.23180 1.01629 1.01614 0.94150 1.23358 0.91450 1.02355 1.04191 0.92969 0.89220 0.92788 0.89169 0.91905 0.75406 0.92806 0.88315 0.92026 0.91184 0.87267 0.91822 0.91809 0.88507 0.91972 0.93200 0.86108 0.89817 0.86405 0.85636 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.54 10.13 -148.98 -1.51 -16.05 16 3 C 0.06 2.07 5.33 71.98 0.38 2.45 16 4 C 0.16 6.62 2.00 44.24 0.09 6.71 16 5 H 0.11 4.43 7.00 -2.39 -0.02 4.41 16 6 N -0.68 -27.87 4.90 -573.74 -2.81 -30.69 16 7 C 0.65 24.63 8.02 129.79 1.04 25.67 16 8 O -0.59 -22.48 11.54 19.84 0.23 -22.26 16 9 O -0.37 -12.45 9.94 -55.54 -0.55 -13.00 16 10 C 0.12 2.98 1.13 -10.79 -0.01 2.97 16 11 C -0.18 -4.50 8.37 71.98 0.60 -3.90 16 12 C -0.14 -2.40 8.85 71.98 0.64 -1.76 16 13 C -0.18 -3.94 8.37 71.98 0.60 -3.33 16 14 C 0.48 24.62 5.96 87.66 0.52 25.14 16 15 O -0.57 -34.43 13.49 -3.08 -0.04 -34.47 16 16 N -0.43 -21.11 2.85 -613.14 -1.75 -22.85 16 17 C -0.35 -19.10 7.86 84.04 0.66 -18.44 16 18 H 0.08 4.26 7.35 -2.91 -0.02 4.24 16 19 C 0.02 1.32 4.36 84.93 0.37 1.69 16 20 N -0.87 -52.98 11.67 21.67 0.25 -52.72 16 21 Si 0.97 45.74 29.60 68.60 2.03 47.77 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 C 0.03 1.29 4.31 44.99 0.19 1.48 16 26 C -0.17 -5.49 9.80 30.62 0.30 -5.19 16 27 C -0.18 -5.18 9.44 30.62 0.29 -4.89 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 2.71 4.49 -2.39 -0.01 2.70 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.41 17.73 7.90 -92.71 -0.73 17.00 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.78 5.88 -2.39 -0.01 1.76 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.26 15.31 8.32 -92.70 -0.77 14.54 16 44 H 0.12 4.02 6.24 -2.39 -0.01 4.01 16 45 H 0.08 3.18 6.80 -2.39 -0.02 3.16 16 46 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 47 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 48 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -75.01 384.11 3.01 -72.00 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: 0.24 Total: 41.70 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 6.93 Total: 30.57 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -4.31 Total: -106.26 kcal Atomic # 8 Polarization: -83.90 SS G_CDS: -1.87 Total: -85.77 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.01 3.01 -72.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495678250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.330 kcal (2) G-P(sol) polarization free energy of solvation -75.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds