Wall clock time and date at job start Tue Mar 31 2020 15:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 C 1.52998 * 109.47428 * 239.99621 * 2 1 3 5 5 O 1.45207 * 109.46839 * 119.99779 * 2 1 3 6 6 C 1.34639 * 116.99801 * 60.00578 * 5 2 1 7 7 O 1.21510 * 120.00286 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99758 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00046 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47093 * 325.00243 * 9 8 6 11 11 C 1.52990 * 109.47305 * 204.99574 * 9 8 6 12 12 C 1.53001 * 109.47298 * 65.00272 * 11 9 8 13 13 C 1.50692 * 109.47390 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00090 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00094 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99738 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00244 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47229 * 60.00157 * 17 15 13 19 19 H 1.48498 * 109.47372 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47214 * 300.00197 * 17 15 13 21 21 C 1.50705 * 109.47074 * 84.99720 * 9 8 6 22 22 O 1.21290 * 119.99524 * 359.97438 * 21 9 8 23 23 N 1.34771 * 120.00359 * 180.02562 * 21 9 8 24 24 C 1.47651 * 125.51243 * 180.02562 * 23 21 9 25 25 C 1.55199 * 102.96417 * 201.99601 * 24 23 21 26 26 C 1.55079 * 100.59061 * 325.88144 * 25 24 23 27 27 O 1.41745 * 125.50616 * 359.97438 * 23 21 9 28 28 H 1.08997 * 109.47296 * 300.00472 * 1 2 3 29 29 H 1.08998 * 109.46879 * 60.00304 * 1 2 3 30 30 H 1.09003 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47293 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46886 * 299.99692 * 3 2 1 33 33 H 1.09001 * 109.46839 * 59.99425 * 3 2 1 34 34 H 1.09003 * 109.47622 * 300.00515 * 4 2 1 35 35 H 1.09007 * 109.47109 * 59.99921 * 4 2 1 36 36 H 1.09003 * 109.47395 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00176 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47260 * 184.99995 * 11 9 8 39 39 H 1.09001 * 109.47669 * 305.00377 * 11 9 8 40 40 H 1.09001 * 109.46739 * 300.00042 * 12 11 9 41 41 H 1.09002 * 109.47161 * 59.99285 * 12 11 9 42 42 H 0.96999 * 120.00165 * 179.97438 * 16 15 13 43 43 H 1.08999 * 110.71927 * 320.36984 * 24 23 21 44 44 H 1.09009 * 110.71414 * 83.45587 * 24 23 21 45 45 H 1.09010 * 111.18905 * 83.71243 * 25 24 23 46 46 H 1.08995 * 111.19244 * 207.99947 * 25 24 23 47 47 H 1.08998 * 110.52591 * 276.31498 * 26 25 24 48 48 H 1.08996 * 110.52554 * 153.56101 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5095 0.5040 8 7 2.0671 -2.6654 2.4172 9 6 1.6731 -4.0666 2.5837 10 1 0.6641 -4.2087 2.1966 11 6 1.7059 -4.4326 4.0688 12 6 0.6457 -3.6224 4.8174 13 6 0.6776 -3.9833 6.2801 14 1 1.3832 -4.7175 6.6399 15 6 -0.1941 -3.3762 7.1592 16 7 -1.0536 -2.4826 6.7210 17 14 -0.1550 -3.8242 8.9722 18 1 1.1872 -3.5179 9.5290 19 1 -1.1840 -3.0377 9.6988 20 1 -0.4375 -5.2735 9.1303 21 6 2.6305 -4.9510 1.8271 22 8 3.5510 -4.4591 1.2093 23 7 2.4633 -6.2882 1.8362 24 6 3.3249 -7.2651 1.1410 25 6 2.4021 -8.5049 0.9998 26 6 1.5813 -8.4001 2.3114 27 8 1.4322 -6.9843 2.5156 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 2.6266 -2.2365 3.0834 38 1 1.4995 -5.4965 4.1855 39 1 2.6910 -4.2067 4.4771 40 1 0.8521 -2.5585 4.7007 41 1 -0.3395 -3.8482 4.4092 42 1 -1.6671 -2.0557 7.3394 43 1 3.6199 -6.8903 0.1609 44 1 4.2030 -7.5012 1.7423 45 1 1.7584 -8.4192 0.1242 46 1 2.9826 -9.4269 0.9700 47 1 2.1268 -8.8504 3.1406 48 1 0.6070 -8.8738 2.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496557448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:28 Heat of formation + Delta-G solvation = -112.483928 kcal Electronic energy + Delta-G solvation = -29822.383834 eV Core-core repulsion = 25686.936952 eV Total energy + Delta-G solvation = -4135.446882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60418 -39.88493 -38.38981 -36.92310 -35.21716 -33.92156 -33.00996 -32.54374 -32.09115 -30.79399 -27.66989 -27.32123 -27.23647 -25.24456 -23.77989 -22.61143 -21.97361 -20.70260 -20.02751 -19.74772 -17.95781 -17.50527 -17.09512 -16.45127 -16.19463 -15.81325 -15.53211 -15.09619 -14.77539 -14.39909 -14.33075 -14.22860 -13.97666 -13.89838 -13.40894 -13.31097 -12.79801 -12.55609 -12.40639 -12.27464 -12.13016 -12.09332 -11.83966 -11.78228 -11.75687 -11.64120 -11.33280 -11.13688 -10.93149 -10.80897 -10.70248 -10.67525 -10.23950 -10.11166 -9.93669 -9.69396 -9.48605 -9.14108 -8.68118 -8.56933 -8.34301 -5.99649 -4.02691 1.97375 2.52543 2.71908 3.23028 3.33332 3.38226 3.40098 3.74047 4.21887 4.45001 4.47814 4.53917 4.72607 4.83781 4.87859 4.98363 5.02347 5.23548 5.35044 5.36159 5.39498 5.43456 5.46917 5.52702 5.61976 5.69653 5.72208 5.75750 5.77613 5.86584 5.98759 6.05745 6.24947 6.37987 6.42797 6.48308 6.57840 6.69202 6.84604 6.95124 7.38767 7.65683 7.76468 7.82390 7.98675 8.15645 8.38980 8.77329 9.03423 9.61223 11.11329 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.007094 B = 0.005000 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3945.821074 B = 5598.365754 C = 8964.018648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.661 3.339 7 O -0.575 6.575 8 N -0.680 5.680 9 C 0.159 3.841 10 H 0.118 0.882 11 C -0.114 4.114 12 C 0.027 3.973 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.543 3.457 22 O -0.525 6.525 23 N -0.483 5.483 24 C 0.091 3.909 25 C -0.155 4.155 26 C 0.030 3.970 27 O -0.154 6.154 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.412 0.588 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 -4.952 -14.496 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.415 3.585 7 O -0.465 6.465 8 N -0.337 5.337 9 C 0.051 3.949 10 H 0.136 0.864 11 C -0.152 4.152 12 C -0.010 4.010 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.333 3.667 22 O -0.400 6.400 23 N -0.266 5.266 24 C -0.030 4.030 25 C -0.193 4.193 26 C -0.047 4.047 27 O -0.154 6.154 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.248 0.752 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.117 0.883 47 H 0.094 0.906 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.696 -4.545 -15.086 17.120 hybrid contribution 0.160 -0.381 1.265 1.331 sum 6.856 -4.925 -13.822 16.196 Atomic orbital electron populations 1.22520 0.94025 1.05275 1.02295 1.21995 0.94397 0.91375 0.82288 1.21846 1.02095 0.92812 1.02954 1.22498 1.01451 1.03587 0.96326 1.86298 1.71481 1.23844 1.46121 1.17931 0.78409 0.80243 0.81962 1.90844 1.41648 1.70595 1.43376 1.44310 1.55206 1.10854 1.23317 1.20968 0.97521 0.77686 0.98687 0.86400 1.22035 1.02307 1.02890 0.87961 1.19085 0.92732 0.94972 0.94257 1.21137 1.18727 1.23358 0.92797 0.92676 1.24997 0.95427 0.95068 0.98749 1.69956 1.21078 1.27087 1.35018 0.86671 0.77684 0.78457 0.85239 1.20274 1.21337 1.20270 1.21168 0.86210 0.78693 0.80653 1.90732 1.33827 1.70509 1.44967 1.50760 1.22995 1.03942 1.48944 1.22749 0.93430 0.88249 0.98551 1.23497 0.98561 0.98614 0.98669 1.23899 1.02041 0.81749 0.97026 1.90846 1.38597 1.17355 1.68629 0.91918 0.91536 0.89228 0.91617 0.90432 0.91366 0.89337 0.91549 0.92325 0.75234 0.89562 0.92272 0.96077 0.96241 0.92924 0.88742 0.90284 0.89347 0.88334 0.90592 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.37 37.16 0.31 -2.28 16 2 C 0.14 1.94 1.13 -90.62 -0.10 1.84 16 3 C -0.14 -1.52 8.85 37.16 0.33 -1.20 16 4 C -0.18 -2.46 8.37 37.16 0.31 -2.15 16 5 O -0.36 -6.31 9.94 -40.32 -0.40 -6.71 16 6 C 0.66 12.75 7.88 54.05 0.43 13.18 16 7 O -0.57 -11.80 11.54 -19.28 -0.22 -12.02 16 8 N -0.68 -12.79 4.06 -59.87 -0.24 -13.04 16 9 C 0.16 3.02 2.15 -69.08 -0.15 2.87 16 10 H 0.12 2.39 7.58 -51.93 -0.39 1.99 16 11 C -0.11 -2.29 4.61 -26.74 -0.12 -2.42 16 12 C 0.03 0.67 4.86 -27.89 -0.14 0.53 16 13 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.54 9.90 7.28 -10.99 -0.08 9.82 16 22 O -0.52 -10.53 16.61 5.55 0.09 -10.44 16 23 N -0.48 -7.41 4.04 -58.32 -0.24 -7.64 16 24 C 0.09 1.01 7.07 -2.25 -0.02 1.00 16 25 C -0.15 -1.20 7.27 -24.47 -0.18 -1.38 16 26 C 0.03 0.29 7.93 38.26 0.30 0.59 16 27 O -0.15 -2.26 10.03 -11.54 -0.12 -2.38 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.50 5.88 -51.93 -0.31 1.19 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 7.26 8.71 -40.82 -0.36 6.90 16 38 H 0.09 1.72 6.23 -51.93 -0.32 1.39 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.55 7.75 -51.93 -0.40 0.15 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 44 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 45 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -34.29 390.90 -7.00 -41.29 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.97 Total: 7.19 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.49 Total: 7.31 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.26 Total: -46.47 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.65 Total: -31.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.29 -7.00 -41.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496557448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.197 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds