Wall clock time and date at job start Tue Mar 31 2020 15:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 H 1.09004 * 109.47372 * 34.71852 * 9 8 6 11 11 C 1.52999 * 109.46963 * 154.72290 * 9 8 6 12 12 C 1.52997 * 109.47080 * 294.99494 * 11 9 8 13 13 C 1.50701 * 109.47234 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00351 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00274 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47220 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47087 * 119.99758 * 17 15 13 20 20 H 1.48495 * 109.47579 * 240.00224 * 17 15 13 21 21 C 1.50701 * 109.46815 * 274.72090 * 9 8 6 22 22 O 1.21272 * 120.00277 * 0.02562 * 21 9 8 23 23 N 1.34781 * 119.99914 * 180.02562 * 21 9 8 24 24 C 1.47655 * 125.50933 * 179.71675 * 23 21 9 25 25 C 1.55403 * 102.86515 * 157.91906 * 24 23 21 26 26 C 1.55086 * 100.49582 * 34.40108 * 25 24 23 27 27 O 1.41750 * 125.50702 * 0.02664 * 23 21 9 28 28 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 29 29 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 30 30 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 33 33 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 34 34 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 35 35 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 36 36 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 38 38 H 1.08997 * 109.47492 * 54.99915 * 11 9 8 39 39 H 1.09007 * 109.47243 * 174.99697 * 11 9 8 40 40 H 1.09002 * 109.47641 * 299.99883 * 12 11 9 41 41 H 1.08998 * 109.46968 * 60.00255 * 12 11 9 42 42 H 0.97000 * 119.99723 * 179.97438 * 16 15 13 43 43 H 1.08999 * 110.71771 * 276.37316 * 24 23 21 44 44 H 1.09001 * 110.71282 * 39.63509 * 24 23 21 45 45 H 1.09003 * 111.37716 * 276.54129 * 25 24 23 46 46 H 1.08997 * 111.13051 * 152.16224 * 25 24 23 47 47 H 1.08997 * 110.52772 * 206.26955 * 26 25 24 48 48 H 1.08998 * 110.64645 * 83.57165 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 1 1.6321 -4.5487 1.6026 11 6 2.7115 -4.7857 3.4519 12 6 4.0570 -4.8204 2.7244 13 6 5.0741 -5.5273 3.5828 14 1 4.7894 -5.9129 4.5507 15 6 6.3684 -5.6809 3.1332 16 7 6.7152 -5.2109 1.9548 17 14 7.6293 -6.5565 4.1974 18 1 6.9913 -6.9880 5.4671 19 1 8.1464 -7.7463 3.4747 20 1 8.7523 -5.6322 4.4965 21 6 0.3262 -4.1416 3.2406 22 8 -0.2560 -3.1222 3.5447 23 7 -0.2365 -5.3400 3.4934 24 6 -1.5478 -5.5530 4.1378 25 6 -1.9379 -6.9809 3.6647 26 6 -0.5416 -7.6541 3.6172 27 8 0.3379 -6.5997 3.1892 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7207 -1.2495 37 1 2.6269 -2.2366 3.0832 38 1 2.8226 -4.2530 4.3963 39 1 2.3775 -5.8049 3.6468 40 1 3.9460 -5.3532 1.7801 41 1 4.3910 -3.8013 2.5295 42 1 7.6259 -5.3186 1.6386 43 1 -1.4547 -5.5160 5.2231 44 1 -2.2735 -4.8193 3.7868 45 1 -2.3992 -6.9602 2.6773 46 1 -2.5874 -7.4713 4.3898 47 1 -0.5361 -8.4724 2.8972 48 1 -0.2546 -8.0139 4.6053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496557449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:31 Heat of formation + Delta-G solvation = -112.459705 kcal Electronic energy + Delta-G solvation = -29821.931248 eV Core-core repulsion = 25686.485416 eV Total energy + Delta-G solvation = -4135.445831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60416 -39.88280 -38.38787 -36.92487 -35.21797 -33.92147 -33.01157 -32.53546 -32.08635 -30.79369 -27.67170 -27.32119 -27.23627 -25.24224 -23.78203 -22.61203 -21.97607 -20.70434 -20.02610 -19.74848 -17.95910 -17.50615 -17.09465 -16.45049 -16.19931 -15.81426 -15.53033 -15.09558 -14.77587 -14.39514 -14.32923 -14.22896 -13.97843 -13.89769 -13.40541 -13.31111 -12.80303 -12.55704 -12.40690 -12.28246 -12.13088 -12.09300 -11.83558 -11.78013 -11.75607 -11.63812 -11.33353 -11.13732 -10.96459 -10.81972 -10.70644 -10.62912 -10.23555 -10.11078 -9.94473 -9.69562 -9.49287 -9.11792 -8.68136 -8.56901 -8.35192 -6.00286 -4.03134 1.97390 2.52538 2.72027 3.22975 3.30874 3.38648 3.42111 3.74184 4.21298 4.44767 4.47807 4.54301 4.72533 4.83783 4.87878 4.98308 5.02351 5.23712 5.34989 5.35816 5.39422 5.43457 5.46908 5.52728 5.61984 5.69566 5.72340 5.75801 5.77599 5.86642 5.98792 6.05797 6.24851 6.38016 6.42795 6.48266 6.57788 6.69160 6.84568 6.94969 7.38803 7.65840 7.76127 7.82291 7.98358 8.15732 8.38629 8.77259 9.03481 9.60969 11.10783 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.007083 B = 0.005007 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3951.997305 B = 5590.436454 C = 8961.705641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.661 3.339 7 O -0.575 6.575 8 N -0.680 5.680 9 C 0.159 3.841 10 H 0.118 0.882 11 C -0.114 4.114 12 C 0.026 3.974 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.543 3.457 22 O -0.524 6.524 23 N -0.483 5.483 24 C 0.091 3.909 25 C -0.155 4.155 26 C 0.030 3.970 27 O -0.154 6.154 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.021 0.979 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 3.245 -0.152 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.415 3.585 7 O -0.465 6.465 8 N -0.337 5.337 9 C 0.051 3.949 10 H 0.136 0.864 11 C -0.152 4.152 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.333 3.667 22 O -0.400 6.400 23 N -0.267 5.267 24 C -0.030 4.030 25 C -0.193 4.193 26 C -0.047 4.047 27 O -0.154 6.154 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.124 0.876 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.719 3.669 -0.701 17.131 hybrid contribution 0.825 -0.602 0.847 1.327 sum -15.894 3.068 0.146 16.188 Atomic orbital electron populations 1.22497 0.94282 1.05096 1.01985 1.21996 0.94142 0.91447 0.82473 1.21845 1.02391 0.92734 1.02737 1.22521 1.01878 1.03581 0.96134 1.86295 1.71641 1.23738 1.46065 1.17933 0.78218 0.80300 0.82098 1.90845 1.41493 1.70377 1.43747 1.44307 1.54253 1.11462 1.23668 1.20968 0.90611 0.80930 1.02364 0.86404 1.22036 0.95947 0.99643 0.97564 1.19097 0.88779 0.97695 0.95556 1.21216 0.94631 1.36737 1.03273 0.92562 1.25004 0.98518 0.95738 0.95045 1.69983 1.18687 1.46085 1.18389 0.86556 0.81526 0.79432 0.80590 1.19758 1.21057 1.21059 1.21159 0.88114 0.79399 0.78031 1.90727 1.64480 1.30772 1.54033 1.50767 1.17429 0.97164 1.61308 1.22792 0.84520 0.97486 0.98174 1.23531 0.97506 0.94584 1.03708 1.23898 0.88918 0.90152 1.01773 1.90847 1.37946 1.04255 1.82381 0.92324 0.91553 0.89332 0.91363 0.90431 0.91621 0.89230 0.91534 0.91919 0.75233 0.92271 0.89557 0.96224 0.96070 0.93042 0.90266 0.88712 0.89321 0.88360 0.87569 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.37 37.16 0.31 -2.15 16 2 C 0.14 1.94 1.13 -90.62 -0.10 1.84 16 3 C -0.14 -1.53 8.85 37.16 0.33 -1.20 16 4 C -0.18 -2.59 8.37 37.16 0.31 -2.28 16 5 O -0.36 -6.31 9.94 -40.32 -0.40 -6.71 16 6 C 0.66 12.75 7.90 54.06 0.43 13.17 16 7 O -0.57 -11.80 11.54 -19.28 -0.22 -12.02 16 8 N -0.68 -12.79 4.06 -59.86 -0.24 -13.03 16 9 C 0.16 3.02 2.15 -69.08 -0.15 2.87 16 10 H 0.12 2.39 7.57 -51.93 -0.39 1.99 16 11 C -0.11 -2.29 4.61 -26.73 -0.12 -2.41 16 12 C 0.03 0.65 4.86 -27.88 -0.14 0.51 16 13 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.54 9.90 7.29 -10.98 -0.08 9.82 16 22 O -0.52 -10.52 16.62 5.56 0.09 -10.43 16 23 N -0.48 -7.41 4.04 -58.21 -0.24 -7.64 16 24 C 0.09 1.01 7.08 -2.13 -0.02 1.00 16 25 C -0.15 -1.20 7.28 -24.35 -0.18 -1.38 16 26 C 0.03 0.29 7.92 38.26 0.30 0.59 16 27 O -0.15 -2.26 10.03 -11.54 -0.12 -2.38 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.50 5.88 -51.93 -0.31 1.19 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.41 7.25 8.71 -40.82 -0.36 6.90 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.72 6.23 -51.93 -0.32 1.40 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.55 7.75 -51.93 -0.40 0.15 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -34.35 390.92 -7.00 -41.34 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.97 Total: 7.13 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 0.49 Total: 7.31 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.26 Total: -46.46 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.65 Total: -31.53 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.35 -7.00 -41.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496557449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.119 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds