Wall clock time and date at job start Tue Mar 31 2020 15:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99998 * 2 1 4 4 C 1.50693 * 109.47349 * 66.04631 * 3 2 1 5 5 H 1.08001 * 120.00204 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00161 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99729 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00017 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47020 * 90.00007 * 8 6 4 10 10 H 1.48502 * 109.47211 * 210.00172 * 8 6 4 11 11 H 1.48498 * 109.47394 * 330.00106 * 8 6 4 12 12 C 1.46897 * 110.99950 * 236.04393 * 2 1 3 13 13 C 1.53001 * 109.47485 * 293.95179 * 12 2 1 14 14 H 1.09003 * 109.46548 * 59.99677 * 13 12 2 15 15 O 1.42898 * 109.47209 * 300.00164 * 13 12 2 16 16 C 1.52995 * 109.47271 * 179.97438 * 13 12 2 17 17 N 1.46906 * 109.46978 * 185.00310 * 16 13 12 18 18 C 1.46901 * 110.99793 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46769 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.46912 * 179.97438 * 19 18 17 21 21 C 1.38249 * 119.96661 * 269.72100 * 20 19 18 22 22 C 1.38217 * 120.07098 * 179.76607 * 21 20 19 23 23 C 1.38403 * 119.99887 * 0.51188 * 22 21 20 24 24 F 1.35105 * 120.03430 * 179.72133 * 23 22 21 25 25 C 1.38650 * 119.93100 * 359.74232 * 23 22 21 26 26 F 1.35098 * 120.03577 * 180.02562 * 25 23 22 27 27 C 1.38215 * 119.96258 * 90.00046 * 20 19 18 28 28 H 1.09002 * 109.47184 * 183.95292 * 1 2 3 29 29 H 1.09004 * 109.47058 * 303.95538 * 1 2 3 30 30 H 1.08995 * 109.47346 * 63.95772 * 1 2 3 31 31 H 1.08998 * 109.47267 * 186.04799 * 3 2 1 32 32 H 1.09000 * 109.46947 * 306.04101 * 3 2 1 33 33 H 0.97007 * 119.99751 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47032 * 173.95165 * 12 2 1 35 35 H 1.09001 * 109.47160 * 53.95777 * 12 2 1 36 36 H 0.96694 * 114.00116 * 300.00232 * 15 13 12 37 37 H 1.08995 * 109.46859 * 65.00602 * 16 13 12 38 38 H 1.09002 * 109.47639 * 305.00270 * 16 13 12 39 39 H 1.00898 * 110.99995 * 303.95410 * 17 16 13 40 40 H 1.09002 * 109.47401 * 59.99808 * 18 17 16 41 41 H 1.09001 * 109.46874 * 299.99821 * 18 17 16 42 42 H 1.09001 * 109.47194 * 299.99524 * 19 18 17 43 43 H 1.08992 * 109.47399 * 59.99697 * 19 18 17 44 44 H 1.08008 * 119.96302 * 0.02562 * 21 20 19 45 45 H 1.08004 * 119.99526 * 180.25969 * 22 21 20 46 46 H 1.08001 * 120.00198 * 359.95144 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0268 3.3495 1.5284 7 7 1.7134 3.9393 2.6614 8 14 2.9999 4.2761 0.2308 9 1 2.0633 4.9797 -0.6818 10 1 3.8863 5.2679 0.8912 11 1 3.8239 3.3175 -0.5485 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2427 -0.9703 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7392 0.2427 16 6 2.1792 -3.0403 -2.1554 17 7 1.7287 -4.4351 -2.0570 18 6 2.2372 -5.2331 -3.1806 19 6 1.7477 -6.6762 -3.0439 20 6 2.2689 -7.4948 -4.1970 21 6 1.5266 -7.6028 -5.3583 22 6 2.0048 -8.3490 -6.4190 23 6 3.2229 -8.9977 -6.3152 24 9 3.6884 -9.7319 -7.3494 25 6 3.9649 -8.8937 -5.1486 26 9 5.1545 -9.5256 -5.0452 27 6 3.4858 -8.1414 -4.0902 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3634 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9273 -0.8310 33 1 1.9880 4.8555 2.8234 34 1 3.0797 -0.6611 -1.1756 35 1 1.5611 -0.3873 -2.0628 36 1 3.1652 -2.6771 0.2787 37 1 3.2686 -3.0086 -2.1422 38 1 1.8143 -2.6055 -3.0859 39 1 1.9994 -4.8411 -1.1738 40 1 3.3271 -5.2166 -3.1742 41 1 1.8730 -4.8135 -4.1184 42 1 2.1116 -7.0961 -2.1061 43 1 0.6579 -6.6924 -3.0506 44 1 0.5740 -7.1001 -5.4384 45 1 1.4258 -8.4291 -7.3272 46 1 4.0630 -8.0593 -3.1810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516965636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:50 Heat of formation + Delta-G solvation = -113.282495 kcal Electronic energy + Delta-G solvation = -26498.566319 eV Core-core repulsion = 22251.997293 eV Total energy + Delta-G solvation = -4246.569026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.91454 -48.99146 -39.80344 -38.47595 -36.47599 -35.36691 -33.04555 -32.46692 -31.36350 -30.20061 -28.43022 -27.45041 -25.78098 -23.94571 -23.69239 -22.77639 -21.78014 -21.09829 -20.12810 -18.41620 -17.70670 -17.42678 -16.99787 -16.77728 -16.53825 -16.10404 -15.53007 -15.40067 -15.23549 -15.00098 -14.93476 -14.58343 -14.34913 -14.21210 -14.03562 -13.89430 -13.46691 -13.16260 -12.94226 -12.67457 -12.44890 -12.27461 -12.19625 -11.82970 -11.74954 -11.61254 -11.43358 -11.27709 -10.99666 -10.75881 -10.70526 -10.30025 -9.93743 -9.65421 -9.59772 -9.25414 -9.11843 -8.70600 -8.58783 -7.35931 -6.05718 -4.02885 0.35940 0.44464 2.77978 3.25961 3.26414 3.33790 3.34801 3.67791 3.84350 3.99897 4.23359 4.40331 4.44265 4.53279 4.57163 4.66082 4.76445 4.81561 5.06198 5.11309 5.16283 5.22135 5.24027 5.27930 5.34796 5.40178 5.41787 5.48143 5.55481 5.62382 5.64456 5.88760 5.91978 6.11076 6.20891 6.22271 6.29044 6.68914 6.70369 6.83029 6.98189 7.13466 7.57898 7.87137 7.89100 8.06905 8.65549 9.04064 9.55769 11.07448 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.001597 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.238858 B =17529.175241 C =17739.380153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.021 3.979 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.544 6.544 16 C 0.028 3.972 17 N -0.685 5.685 18 C 0.063 3.937 19 C -0.081 4.081 20 C -0.058 4.058 21 C -0.095 4.095 22 C -0.122 4.122 23 C 0.060 3.940 24 F -0.130 7.130 25 C 0.070 3.930 26 F -0.129 7.129 27 C -0.124 4.124 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.009 0.991 31 H 0.026 0.974 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.367 0.633 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.349 0.651 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -26.400 -18.516 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.243 5.243 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.348 6.348 16 C -0.102 4.102 17 N -0.317 5.317 18 C -0.066 4.066 19 C -0.118 4.118 20 C -0.059 4.059 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.040 3.960 24 F -0.109 7.109 25 C 0.050 3.950 26 F -0.107 7.107 27 C -0.143 4.143 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.000 1.000 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.214 0.786 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.168 0.832 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.430 -26.481 -18.167 32.116 hybrid contribution 2.198 0.847 -1.660 2.882 sum 2.628 -25.634 -19.827 32.514 Atomic orbital electron populations 1.22293 0.88217 1.00159 1.00671 1.61856 1.07423 1.15929 1.39075 1.20206 0.95042 0.84192 0.97027 1.21041 1.35488 0.97149 1.00937 0.90027 1.24911 0.95815 0.97367 0.95326 1.69900 1.46886 1.13218 1.23887 0.86857 0.80612 0.80025 0.82160 1.20393 1.21135 1.19350 1.22765 1.00340 0.94309 0.93443 1.21965 0.99177 0.90639 0.82833 0.87709 1.86616 1.24891 1.84802 1.38499 1.22690 0.97657 0.89316 1.00520 1.60381 1.63567 1.02081 1.05702 1.21932 0.97082 0.92083 0.95542 1.20623 1.02412 0.93472 0.95338 1.19806 0.93312 0.96710 0.96079 1.21078 1.00555 0.97992 0.91723 1.21127 0.94115 0.97810 1.01070 1.17736 0.95342 0.98048 0.84891 1.91537 1.88503 1.74758 1.56077 1.17697 0.83602 0.98815 0.94926 1.91543 1.42800 1.80006 1.96391 1.21038 0.97139 0.97684 0.98404 0.93003 0.90129 0.97273 0.95608 1.00047 0.92675 0.91349 0.95202 0.78646 0.94915 0.90331 0.83183 0.95115 0.90775 0.90288 0.89097 0.83906 0.83550 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.14 60.06 0.55 1.22 16 2 N -0.52 -10.68 4.62 -244.38 -1.13 -11.81 16 3 C 0.16 3.90 3.79 -4.98 -0.02 3.88 16 4 C -0.51 -14.46 9.01 -34.44 -0.31 -14.77 16 5 H 0.08 2.54 7.37 -52.49 -0.39 2.16 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 8 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.02 0.33 4.62 -3.82 -0.02 0.32 16 13 C 0.11 1.47 3.07 -26.73 -0.08 1.39 16 14 H 0.11 1.47 6.55 -51.93 -0.34 1.13 16 15 O -0.54 -7.58 12.72 -35.23 -0.45 -8.03 16 16 C 0.03 0.28 5.36 -3.82 -0.02 0.26 16 17 N -0.69 -5.97 6.50 -113.78 -0.74 -6.71 16 18 C 0.06 0.43 5.67 -3.82 -0.02 0.40 16 19 C -0.08 -0.43 5.60 -27.88 -0.16 -0.59 16 20 C -0.06 -0.33 5.13 -104.62 -0.54 -0.87 16 21 C -0.10 -0.48 9.69 -39.58 -0.38 -0.86 16 22 C -0.12 -0.70 10.02 -39.53 -0.40 -1.09 16 23 C 0.06 0.48 7.31 -39.37 -0.29 0.19 16 24 F -0.13 -1.21 17.18 2.25 0.04 -1.17 16 25 C 0.07 0.57 7.31 -39.37 -0.29 0.28 16 26 F -0.13 -1.24 17.18 2.25 0.04 -1.20 16 27 C -0.12 -0.80 9.68 -39.53 -0.38 -1.18 16 28 H 0.05 0.87 6.47 -51.93 -0.34 0.54 16 29 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.03 0.63 6.99 -51.93 -0.36 0.26 16 32 H -0.02 -0.44 7.55 -51.93 -0.39 -0.83 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 35 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.37 4.09 9.05 45.56 0.41 4.50 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.35 3.03 8.29 -39.29 -0.33 2.71 16 40 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 43 H 0.09 0.47 8.08 -51.93 -0.42 0.06 16 44 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 45 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 46 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -32.35 385.71 -9.08 -41.43 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.30 Total: 1.31 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.45 Total: -9.57 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -1.10 Total: -45.31 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.45 Total: -8.03 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.35 -9.08 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516965636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.856 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds