Wall clock time and date at job start Tue Mar 31 2020 15:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99901 * 2 1 4 4 C 1.50696 * 109.47341 * 293.95682 * 3 2 1 5 5 H 1.08008 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00161 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99949 * 359.97438 * 6 4 3 9 9 H 1.48509 * 109.46911 * 90.00533 * 8 6 4 10 10 H 1.48503 * 109.47249 * 210.00245 * 8 6 4 11 11 H 1.48501 * 109.47295 * 330.00291 * 8 6 4 12 12 C 1.46894 * 110.99955 * 123.95540 * 2 1 3 13 13 C 1.53003 * 109.47283 * 66.04903 * 12 2 1 14 14 H 1.09004 * 109.47149 * 305.00089 * 13 12 2 15 15 O 1.42902 * 109.47042 * 64.99584 * 13 12 2 16 16 C 1.52997 * 109.47071 * 184.99927 * 13 12 2 17 17 N 1.46904 * 109.46950 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00029 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47254 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 17 21 21 C 1.38258 * 119.96636 * 269.72739 * 20 19 18 22 22 C 1.38212 * 120.07221 * 179.76660 * 21 20 19 23 23 C 1.38416 * 119.99794 * 0.50422 * 22 21 20 24 24 F 1.35098 * 120.03604 * 179.72778 * 23 22 21 25 25 C 1.38653 * 119.92958 * 359.74796 * 23 22 21 26 26 F 1.35097 * 120.03391 * 180.02562 * 25 23 22 27 27 C 1.38218 * 119.96381 * 89.99783 * 20 19 18 28 28 H 1.08997 * 109.46962 * 296.04243 * 1 2 3 29 29 H 1.09003 * 109.47103 * 56.04365 * 1 2 3 30 30 H 1.09003 * 109.46735 * 176.04315 * 1 2 3 31 31 H 1.09003 * 109.47141 * 53.95361 * 3 2 1 32 32 H 1.09000 * 109.47139 * 173.95135 * 3 2 1 33 33 H 0.97004 * 120.00209 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47742 * 306.04590 * 12 2 1 35 35 H 1.09010 * 109.46775 * 186.04408 * 12 2 1 36 36 H 0.96695 * 113.99730 * 60.00759 * 15 13 12 37 37 H 1.08995 * 109.47319 * 59.99998 * 16 13 12 38 38 H 1.09003 * 109.47435 * 299.99322 * 16 13 12 39 39 H 1.00908 * 110.99583 * 303.94989 * 17 16 13 40 40 H 1.09002 * 109.47043 * 299.99792 * 18 17 16 41 41 H 1.09001 * 109.47354 * 59.99854 * 18 17 16 42 42 H 1.09002 * 109.47153 * 300.00004 * 19 18 17 43 43 H 1.08998 * 109.47533 * 59.99633 * 19 18 17 44 44 H 1.08001 * 119.96198 * 0.02562 * 21 20 19 45 45 H 1.07998 * 120.00297 * 180.25447 * 22 21 20 46 46 H 1.07999 * 119.99893 * 359.95936 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 1.7143 3.9391 -2.6617 8 14 3.0008 4.2758 -0.2313 9 1 4.4533 4.0624 -0.4557 10 1 2.6935 5.7257 -0.3235 11 1 2.6295 3.7759 1.1169 12 6 1.9954 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5532 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1802 16 6 2.0700 -3.0199 2.2130 17 7 1.7211 -4.4378 2.0520 18 6 2.1276 -5.2169 3.2292 19 6 1.7480 -6.6849 3.0253 20 6 2.1655 -7.4842 4.2326 21 6 3.4213 -8.0609 4.2785 22 6 3.8083 -8.7904 5.3868 23 6 2.9345 -8.9531 6.4479 24 9 3.3099 -9.6706 7.5292 25 6 1.6732 -8.3792 6.3996 26 9 0.8188 -8.5362 7.4343 27 6 1.2906 -7.6448 5.2905 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1083 33 1 1.9895 4.8550 -2.8240 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1755 36 1 3.2601 -2.7167 -0.1361 37 1 1.5634 -2.6180 3.0904 38 1 3.1483 -2.9237 2.3400 39 1 0.7352 -4.5490 1.8681 40 1 3.2062 -5.1355 3.3641 41 1 1.6207 -4.8304 4.1135 42 1 0.6694 -6.7660 2.8907 43 1 2.2545 -7.0717 2.1410 44 1 4.1021 -7.9376 3.4492 45 1 4.7910 -9.2369 5.4233 46 1 0.3086 -7.1970 5.2518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516965637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:53 Heat of formation + Delta-G solvation = -111.125875 kcal Electronic energy + Delta-G solvation = -26491.310110 eV Core-core repulsion = 22244.834602 eV Total energy + Delta-G solvation = -4246.475508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.91807 -48.99499 -39.80141 -38.41186 -36.48417 -35.33133 -33.05344 -32.46390 -31.36404 -30.15642 -28.42472 -27.45112 -25.79858 -23.94329 -23.68897 -22.81081 -21.80055 -21.08913 -20.13671 -18.41631 -17.70638 -17.42629 -16.95461 -16.78708 -16.61746 -15.84761 -15.46087 -15.41554 -15.39579 -14.98675 -14.84287 -14.61588 -14.37394 -14.24527 -14.10472 -13.83312 -13.41336 -13.22733 -12.92055 -12.73749 -12.41284 -12.29402 -12.10078 -11.87874 -11.73021 -11.63371 -11.43544 -11.22847 -11.00294 -10.80843 -10.54606 -10.31735 -10.03323 -9.63318 -9.55282 -9.24984 -9.11393 -8.66640 -8.57888 -7.35448 -6.05620 -4.02893 0.35921 0.44407 2.77974 3.26225 3.26348 3.33869 3.34845 3.66443 3.84011 3.99874 4.23257 4.40395 4.44607 4.52879 4.60202 4.67838 4.73123 4.83818 5.04213 5.09834 5.16881 5.22087 5.24746 5.27876 5.37023 5.41391 5.45906 5.48656 5.50124 5.57579 5.65036 5.88958 5.90512 6.06998 6.18543 6.21009 6.27843 6.65568 6.68947 6.83673 6.96760 7.08480 7.57053 7.87767 7.97319 8.10697 8.65320 9.03950 9.55782 11.07511 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.028507 B = 0.001590 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.993359 B =17606.182861 C =17745.815902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.021 3.979 13 C 0.117 3.883 14 H 0.094 0.906 15 O -0.534 6.534 16 C 0.026 3.974 17 N -0.678 5.678 18 C 0.063 3.937 19 C -0.081 4.081 20 C -0.058 4.058 21 C -0.095 4.095 22 C -0.122 4.122 23 C 0.060 3.940 24 F -0.130 7.130 25 C 0.069 3.931 26 F -0.129 7.129 27 C -0.124 4.124 28 H 0.008 0.992 29 H 0.081 0.919 30 H 0.050 0.950 31 H -0.014 1.014 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.368 0.632 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.342 0.658 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -26.546 18.137 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.109 4.109 13 C 0.056 3.944 14 H 0.112 0.888 15 O -0.337 6.337 16 C -0.104 4.104 17 N -0.309 5.309 18 C -0.066 4.066 19 C -0.118 4.118 20 C -0.059 4.059 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.040 3.960 24 F -0.109 7.109 25 C 0.049 3.951 26 F -0.108 7.108 27 C -0.143 4.143 28 H 0.027 0.973 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.004 0.996 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.191 -26.875 17.137 31.949 hybrid contribution 0.091 1.314 2.865 3.153 sum 2.282 -25.561 20.003 32.537 Atomic orbital electron populations 1.22297 0.88354 0.99978 1.00724 1.61847 1.07275 1.16042 1.39167 1.20197 0.94797 0.84170 0.97279 1.21040 1.35599 0.97161 1.00852 0.90031 1.24906 0.95847 0.97361 0.95278 1.69894 1.46865 1.13280 1.23842 0.86870 0.80914 0.79319 0.82656 1.20139 1.21194 1.19437 1.22790 1.00536 0.94315 0.93213 1.21861 0.97721 0.90379 0.84416 0.88826 1.86611 1.22907 1.83828 1.40399 1.22731 1.01611 0.87997 0.98029 1.60347 1.23808 1.08802 1.37950 1.21940 1.01276 0.91921 0.91492 1.20619 1.02426 0.93830 0.94942 1.19812 0.93450 0.97146 0.95502 1.21086 0.96037 0.96223 0.97955 1.21133 1.00073 1.00532 0.92365 1.17739 0.93443 0.98174 0.86662 1.91535 1.91388 1.75460 1.52490 1.17697 0.87704 1.02305 0.87368 1.91541 1.68983 1.94082 1.56159 1.21031 1.01763 0.99552 0.91962 0.97320 0.90036 0.93176 0.99605 0.95964 0.92668 0.95478 0.91095 0.78546 0.94622 0.90622 0.83976 0.90702 0.95245 0.90380 0.88998 0.83862 0.83533 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.14 60.07 0.55 1.21 16 2 N -0.52 -10.71 4.70 -244.37 -1.15 -11.86 16 3 C 0.16 3.90 3.79 -4.98 -0.02 3.89 16 4 C -0.51 -14.48 9.01 -34.44 -0.31 -14.79 16 5 H 0.08 2.54 7.37 -52.48 -0.39 2.16 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 8 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 12 C 0.02 0.33 4.59 -3.83 -0.02 0.32 16 13 C 0.12 1.51 3.13 -26.73 -0.08 1.42 16 14 H 0.09 1.26 6.34 -51.93 -0.33 0.93 16 15 O -0.53 -7.82 13.15 -35.23 -0.46 -8.29 16 16 C 0.03 0.26 5.35 -3.82 -0.02 0.24 16 17 N -0.68 -5.83 6.37 -113.78 -0.72 -6.56 16 18 C 0.06 0.42 5.67 -3.83 -0.02 0.40 16 19 C -0.08 -0.42 5.60 -27.89 -0.16 -0.58 16 20 C -0.06 -0.33 5.13 -104.62 -0.54 -0.86 16 21 C -0.09 -0.48 9.69 -39.58 -0.38 -0.86 16 22 C -0.12 -0.70 10.02 -39.53 -0.40 -1.09 16 23 C 0.06 0.48 7.31 -39.36 -0.29 0.19 16 24 F -0.13 -1.21 17.18 2.25 0.04 -1.17 16 25 C 0.07 0.57 7.31 -39.36 -0.29 0.28 16 26 F -0.13 -1.24 17.18 2.25 0.04 -1.20 16 27 C -0.12 -0.80 9.68 -39.52 -0.38 -1.18 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 30 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 31 H -0.01 -0.33 7.18 -51.93 -0.37 -0.71 16 32 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.07 1.07 7.93 -51.92 -0.41 0.66 16 36 H 0.37 4.41 9.04 45.56 0.41 4.82 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.34 2.78 8.73 -39.29 -0.34 2.44 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 43 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 46 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -32.69 386.23 -9.09 -41.78 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.31 Total: 1.11 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.45 Total: -9.57 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -1.10 Total: -45.19 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.46 Total: -8.29 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.69 -9.09 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516965637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.343 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds