Wall clock time and date at job start Tue Mar 31 2020 16:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21551 * 119.99917 * 359.97438 * 17 16 15 19 19 C 1.47850 * 120.00238 * 180.02562 * 17 16 15 20 20 C 1.39493 * 120.04093 * 0.02562 * 19 17 16 21 21 C 1.37933 * 119.76885 * 179.97438 * 20 19 17 22 22 C 1.38262 * 120.09366 * 359.97438 * 21 20 19 23 23 C 1.38615 * 120.52682 * 359.97438 * 22 21 20 24 24 C 1.37973 * 119.93286 * 359.75291 * 23 22 21 25 25 C 1.51345 * 109.82865 * 179.84762 * 24 23 22 26 26 C 1.54351 * 105.21358 * 343.18622 * 25 24 23 27 27 C 1.51403 * 130.30398 * 180.02562 * 23 22 21 28 28 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 29 29 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 31 31 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 32 32 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 33 33 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 34 34 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 35 35 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 36 36 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 37 37 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 38 38 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 39 39 H 1.08000 * 120.11523 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.95068 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.73026 * 180.02562 * 22 21 20 42 42 H 1.09003 * 110.44926 * 224.16212 * 25 24 23 43 43 H 1.09003 * 110.19680 * 102.08363 * 25 24 23 44 44 H 1.09007 * 110.82926 * 267.89354 * 26 25 24 45 45 H 1.08994 * 110.83445 * 144.32095 * 26 25 24 46 46 H 1.09002 * 110.30504 * 316.07709 * 27 23 22 47 47 H 1.08996 * 110.30282 * 78.14061 * 27 23 22 48 48 H 1.09004 * 109.58771 * 246.19814 * 28 9 7 49 49 H 1.08998 * 109.58854 * 6.63257 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5698 -8.1149 -0.7621 19 6 5.4496 -7.0090 -1.6012 20 6 6.1421 -5.8032 -1.7117 21 6 7.3339 -5.7589 -2.4048 22 6 7.8401 -6.9061 -2.9873 23 6 7.1592 -8.1088 -2.8816 24 6 5.9690 -8.1673 -2.1862 25 6 5.4243 -9.5790 -2.2185 26 6 6.1853 -10.2806 -3.3636 27 6 7.5036 -9.4801 -3.4231 28 6 1.8152 -3.6539 -0.1863 29 1 -0.4850 0.8399 -0.0004 30 1 0.1001 -1.3265 1.6691 31 1 -0.6743 -2.6384 0.7459 32 1 1.3517 -2.9480 3.0109 33 1 -0.3776 -3.3672 3.0687 34 1 0.9907 -5.3887 2.6790 35 1 -0.0199 -5.0363 1.2570 36 1 2.5016 -6.7021 1.2763 37 1 1.6148 -6.3325 -0.2222 38 1 4.1561 -5.1085 -0.3666 39 1 5.7466 -4.9074 -1.2562 40 1 7.8723 -4.8268 -2.4925 41 1 8.7740 -6.8648 -3.5283 42 1 4.3542 -9.5697 -2.4255 43 1 5.6212 -10.0802 -1.2707 44 1 5.6375 -10.1956 -4.3022 45 1 6.3770 -11.3253 -3.1187 46 1 7.8532 -9.4033 -4.4527 47 1 8.2632 -9.9527 -2.8006 48 1 1.0392 -4.0654 -0.8318 49 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531357492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:52 Heat of formation + Delta-G solvation = -6.936699 kcal Electronic energy + Delta-G solvation = -27783.228621 eV Core-core repulsion = 24095.500624 eV Total energy + Delta-G solvation = -3687.727996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.69017 -39.07556 -37.69755 -35.92541 -34.76772 -33.02897 -31.84292 -30.46269 -30.24712 -29.21330 -27.58594 -25.59483 -25.26560 -23.58830 -22.10917 -21.57703 -21.27907 -20.72590 -20.12146 -19.04445 -17.44238 -16.63560 -16.33348 -15.91536 -15.58653 -15.19512 -15.10885 -14.84898 -14.55450 -14.19595 -13.74493 -13.45605 -13.40112 -13.29551 -13.01145 -12.81324 -12.75532 -12.33846 -12.18636 -12.16202 -11.99060 -11.52488 -11.45601 -11.33722 -11.26774 -11.08830 -11.03789 -10.71702 -10.50979 -10.25685 -10.19566 -9.96530 -9.81186 -9.54557 -9.43250 -9.12412 -8.82713 -8.71981 -8.48452 -6.69607 -5.81436 -3.24059 0.73554 1.15214 2.85874 3.27186 3.34585 3.42190 3.43865 3.72002 4.16436 4.35914 4.45889 4.65420 4.75754 4.81070 4.88330 4.99031 5.08924 5.25787 5.27589 5.30453 5.42882 5.45917 5.47790 5.54466 5.60714 5.63379 5.69450 5.82363 5.83776 5.94726 5.95594 5.99495 6.01814 6.14114 6.22349 6.23441 6.31737 6.36006 6.37635 6.51633 6.57800 6.68849 6.70155 6.76480 6.84743 6.95023 7.38312 7.60594 7.65816 7.76093 8.28813 8.41971 9.18273 9.81971 10.38887 11.26803 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.002796 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.440426 B =10011.797293 C =11464.576951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.128 3.872 16 N -0.719 5.719 17 C 0.554 3.446 18 O -0.541 6.541 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.085 4.085 23 C -0.112 4.112 24 C -0.034 4.034 25 C -0.080 4.080 26 C -0.124 4.124 27 C -0.080 4.080 28 C 0.154 3.846 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.402 0.598 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.019 0.981 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.713 -16.731 -3.401 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.371 5.371 17 C 0.342 3.658 18 O -0.419 6.419 19 C -0.125 4.125 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.103 4.103 23 C -0.112 4.112 24 C -0.035 4.035 25 C -0.117 4.117 26 C -0.161 4.161 27 C -0.117 4.117 28 C 0.027 3.973 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.238 0.762 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.037 0.963 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.134 -17.305 -3.321 21.977 hybrid contribution 0.634 1.541 -0.010 1.667 sum 13.768 -15.764 -3.331 21.193 Atomic orbital electron populations 1.70037 1.05294 1.25513 1.53698 1.25039 0.95260 0.98424 1.00885 0.86310 0.79224 0.83791 0.77618 1.21461 1.21549 1.20428 1.19148 0.92630 0.84875 1.41711 0.91772 1.44056 1.36042 1.01236 1.50039 1.20799 0.88520 0.98421 0.87977 1.22166 1.00100 0.95934 0.99847 1.21337 0.96719 0.97740 0.97947 1.22040 0.98857 0.93562 0.99430 0.90858 1.21477 0.84633 0.98037 0.95437 1.46022 1.24886 1.11464 1.54693 1.18286 0.84769 0.83861 0.78911 1.90727 1.60917 1.29732 1.60565 1.19602 0.96264 0.93763 1.02910 1.21310 0.94823 0.96611 0.97616 1.21004 0.96350 0.98502 0.98642 1.20815 0.99382 0.91491 0.98599 1.20618 0.95587 0.95353 0.99659 1.20580 0.94302 0.94597 0.94051 1.21100 1.01347 0.90268 0.98987 1.22368 0.95467 0.99170 0.99114 1.21051 0.98389 0.91178 1.01084 1.20984 0.97430 0.86862 0.92006 0.93616 0.89550 0.96442 0.92755 0.93172 0.93433 0.92463 0.91898 0.91483 0.76234 0.85136 0.85083 0.85893 0.89197 0.89916 0.90908 0.90470 0.90680 0.90204 0.96288 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -14.41 2.99 -172.06 -0.51 -14.93 16 10 C 0.17 3.96 5.31 -3.71 -0.02 3.94 16 11 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 12 C -0.10 -1.63 5.16 -26.69 -0.14 -1.76 16 13 C -0.12 -1.94 2.39 -90.27 -0.22 -2.15 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.13 1.89 5.06 -4.05 -0.02 1.87 16 16 N -0.72 -10.07 5.28 -61.25 -0.32 -10.39 16 17 C 0.55 8.32 7.77 -12.33 -0.10 8.22 16 18 O -0.54 -9.43 14.70 5.32 0.08 -9.36 16 19 C -0.12 -1.60 5.88 -104.92 -0.62 -2.22 16 20 C -0.08 -0.95 9.54 -39.23 -0.37 -1.32 16 21 C -0.13 -1.23 10.03 -39.68 -0.40 -1.62 16 22 C -0.08 -0.79 10.03 -39.43 -0.40 -1.18 16 23 C -0.11 -1.15 6.13 -104.23 -0.64 -1.79 16 24 C -0.03 -0.42 6.04 -103.83 -0.63 -1.05 16 25 C -0.08 -0.89 5.58 -26.86 -0.15 -1.04 16 26 C -0.12 -1.00 7.09 -25.32 -0.18 -1.18 16 27 C -0.08 -0.62 6.77 -26.83 -0.18 -0.80 16 28 C 0.15 3.09 5.63 -3.48 -0.02 3.07 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.40 5.08 5.75 -40.82 -0.23 4.84 16 39 H 0.13 1.28 6.40 -52.49 -0.34 0.95 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.09 1.14 7.19 -51.93 -0.37 0.77 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.05 0.95 7.16 -51.93 -0.37 0.58 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -31.20 382.87 -11.80 -43.00 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.94 Total: 3.70 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -4.46 Total: -8.77 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.22 Total: -50.60 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.20 -11.80 -43.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531357492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.065 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds