Wall clock time and date at job start Tue Mar 31 2020 16:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21551 * 119.99917 * 359.97438 * 17 16 15 19 19 C 1.47850 * 120.00238 * 180.02562 * 17 16 15 20 20 C 1.39493 * 120.04093 * 0.02562 * 19 17 16 21 21 C 1.37933 * 119.76885 * 179.97438 * 20 19 17 22 22 C 1.38262 * 120.09366 * 359.97438 * 21 20 19 23 23 C 1.38615 * 120.52682 * 359.97438 * 22 21 20 24 24 C 1.37973 * 119.93286 * 359.75291 * 23 22 21 25 25 C 1.51345 * 109.82865 * 179.84762 * 24 23 22 26 26 C 1.54351 * 105.21358 * 343.18622 * 25 24 23 27 27 C 1.51403 * 130.30398 * 180.02562 * 23 22 21 28 28 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 29 29 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 31 31 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 32 32 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 33 33 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 34 34 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 35 35 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 36 36 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 37 37 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 38 38 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 39 39 H 1.08000 * 120.11523 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.95068 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.73026 * 180.02562 * 22 21 20 42 42 H 1.09003 * 110.44926 * 224.16212 * 25 24 23 43 43 H 1.09003 * 110.19680 * 102.08363 * 25 24 23 44 44 H 1.09007 * 110.82926 * 267.89354 * 26 25 24 45 45 H 1.08994 * 110.83445 * 144.32095 * 26 25 24 46 46 H 1.09002 * 110.30504 * 316.07709 * 27 23 22 47 47 H 1.08996 * 110.30282 * 78.14061 * 27 23 22 48 48 H 1.09004 * 109.58771 * 246.19814 * 28 9 7 49 49 H 1.08998 * 109.58854 * 6.63257 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5698 -8.1149 -0.7621 19 6 5.4496 -7.0090 -1.6012 20 6 6.1421 -5.8032 -1.7117 21 6 7.3339 -5.7589 -2.4048 22 6 7.8401 -6.9061 -2.9873 23 6 7.1592 -8.1088 -2.8816 24 6 5.9690 -8.1673 -2.1862 25 6 5.4243 -9.5790 -2.2185 26 6 6.1853 -10.2806 -3.3636 27 6 7.5036 -9.4801 -3.4231 28 6 1.8152 -3.6539 -0.1863 29 1 -0.4850 0.8399 -0.0004 30 1 0.1001 -1.3265 1.6691 31 1 -0.6743 -2.6384 0.7459 32 1 1.3517 -2.9480 3.0109 33 1 -0.3776 -3.3672 3.0687 34 1 0.9907 -5.3887 2.6790 35 1 -0.0199 -5.0363 1.2570 36 1 2.5016 -6.7021 1.2763 37 1 1.6148 -6.3325 -0.2222 38 1 4.1561 -5.1085 -0.3666 39 1 5.7466 -4.9074 -1.2562 40 1 7.8723 -4.8268 -2.4925 41 1 8.7740 -6.8648 -3.5283 42 1 4.3542 -9.5697 -2.4255 43 1 5.6212 -10.0802 -1.2707 44 1 5.6375 -10.1956 -4.3022 45 1 6.3770 -11.3253 -3.1187 46 1 7.8532 -9.4033 -4.4527 47 1 8.2632 -9.9527 -2.8006 48 1 1.0392 -4.0654 -0.8318 49 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531357492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:51 Heat of formation + Delta-G solvation = -23.281594 kcal Electronic energy + Delta-G solvation = -27783.937388 eV Core-core repulsion = 24095.500624 eV Total energy + Delta-G solvation = -3688.436764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60726 -40.18245 -39.20517 -36.73160 -36.19072 -34.67028 -32.82919 -32.30409 -31.65991 -29.96152 -28.42440 -27.26803 -26.78167 -24.60056 -23.79016 -22.65867 -22.28676 -21.75127 -21.27186 -20.51010 -18.75405 -18.25156 -17.34410 -16.85524 -16.73289 -16.52125 -16.27189 -16.00415 -15.79162 -15.43602 -15.36124 -15.03894 -14.55340 -14.41274 -14.09008 -13.98628 -13.79270 -13.72208 -13.70047 -13.34457 -13.01341 -12.88993 -12.71189 -12.51343 -12.32446 -12.27072 -12.18439 -12.01837 -11.97911 -11.84162 -11.75705 -11.59376 -11.34402 -11.11323 -10.83026 -10.53253 -10.20198 -9.77736 -9.51087 -8.68462 -7.86961 -5.32645 -0.14081 0.36059 1.46776 1.48694 1.58355 1.84948 2.15854 2.51253 2.82917 3.27959 3.42956 3.56749 3.63611 3.74898 3.95234 3.98680 4.03005 4.05112 4.17355 4.19385 4.28463 4.39695 4.47955 4.52252 4.55627 4.63388 4.74307 4.78376 4.86142 4.87534 4.88857 4.95022 4.99989 5.02652 5.09220 5.12652 5.17211 5.21816 5.30453 5.31488 5.36577 5.37349 5.45902 5.46316 5.56516 5.57907 5.66492 5.77915 5.94373 6.38580 6.49081 7.14617 7.15205 7.85819 8.38191 9.19404 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.002796 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.440426 B =10011.797293 C =11464.576951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.097 4.097 13 C -0.100 4.100 14 H 0.077 0.923 15 C 0.138 3.862 16 N -0.715 5.715 17 C 0.551 3.449 18 O -0.573 6.573 19 C -0.148 4.148 20 C -0.093 4.093 21 C -0.128 4.128 22 C -0.081 4.081 23 C -0.116 4.116 24 C -0.060 4.060 25 C -0.082 4.082 26 C -0.118 4.118 27 C -0.076 4.076 28 C 0.153 3.847 29 H 0.249 0.751 30 H 0.052 0.948 31 H -0.008 1.008 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.408 0.592 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.004 0.996 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.692 -17.571 -3.583 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.120 4.120 14 H 0.096 0.904 15 C 0.014 3.986 16 N -0.367 5.367 17 C 0.340 3.660 18 O -0.454 6.454 19 C -0.151 4.151 20 C -0.112 4.112 21 C -0.145 4.145 22 C -0.099 4.099 23 C -0.116 4.116 24 C -0.061 4.061 25 C -0.119 4.119 26 C -0.155 4.155 27 C -0.113 4.113 28 C 0.027 3.973 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.246 0.754 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.172 0.828 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.022 0.978 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.140 -18.158 -3.500 24.545 hybrid contribution -0.283 1.777 -0.009 1.799 sum 15.857 -16.381 -3.509 23.067 Atomic orbital electron populations 1.70201 1.06821 1.25802 1.55488 1.25820 0.95990 1.01625 1.01386 0.85277 0.78337 0.79605 0.77329 1.21380 1.22135 1.19048 1.19545 0.93103 0.85917 1.40581 0.91103 1.44327 1.36025 1.02136 1.50700 1.20643 0.87627 0.97887 0.89198 1.21993 1.01001 0.95843 0.97992 1.21336 0.96442 0.96850 0.98864 1.21798 0.99160 0.93280 0.97789 0.90422 1.21295 0.84786 0.96941 0.95554 1.45968 1.24566 1.11711 1.54431 1.18679 0.85309 0.83396 0.78585 1.90702 1.62020 1.30828 1.61880 1.19617 0.95980 0.95184 1.04290 1.21478 0.95498 0.96132 0.98089 1.21362 0.95689 0.99843 0.97643 1.21223 1.00125 0.90789 0.97728 1.21003 0.94745 0.96942 0.98914 1.20869 0.95597 0.94735 0.94938 1.21095 1.00237 0.90580 0.99992 1.22378 0.95323 1.00019 0.97787 1.21117 0.98272 0.89555 1.02352 1.21096 0.96972 0.85842 0.93374 0.94195 0.92934 0.99013 0.92741 0.91192 0.90122 0.92689 0.90865 0.92520 0.75430 0.84419 0.82575 0.82794 0.91798 0.90584 0.90793 0.88589 0.88749 0.88728 0.97758 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.56 11.19 21.65 0.24 -55.32 16 2 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 3 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.26 -14.06 9.58 84.03 0.81 -13.26 16 8 H 0.07 3.64 7.89 -2.92 -0.02 3.61 16 9 N -0.61 -30.05 2.99 -698.26 -2.09 -32.14 16 10 C 0.17 8.29 5.31 86.36 0.46 8.75 16 11 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 12 C -0.10 -3.00 5.16 30.62 0.16 -2.84 16 13 C -0.10 -3.15 2.39 -10.57 -0.03 -3.18 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 15 C 0.14 3.97 5.06 86.38 0.44 4.41 16 16 N -0.72 -19.76 5.28 -465.98 -2.46 -22.22 16 17 C 0.55 16.77 7.77 86.79 0.67 17.44 16 18 O -0.57 -20.62 14.70 -3.88 -0.06 -20.67 16 19 C -0.15 -3.86 5.88 -20.06 -0.12 -3.98 16 20 C -0.09 -1.98 9.54 22.50 0.21 -1.76 16 21 C -0.13 -2.14 10.03 22.20 0.22 -1.92 16 22 C -0.08 -1.25 10.03 22.37 0.22 -1.03 16 23 C -0.12 -2.14 6.13 -19.61 -0.12 -2.26 16 24 C -0.06 -1.46 6.04 -19.35 -0.12 -1.58 16 25 C -0.08 -1.84 5.58 30.51 0.17 -1.67 16 26 C -0.12 -1.72 7.09 31.51 0.22 -1.49 16 27 C -0.08 -0.97 6.77 30.53 0.21 -0.76 16 28 C 0.15 6.13 5.63 86.51 0.49 6.62 16 29 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.05 2.87 6.04 -2.39 -0.01 2.86 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.41 10.05 5.75 -92.70 -0.53 9.52 16 39 H 0.14 2.56 6.40 -2.91 -0.02 2.54 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.06 1.73 7.19 -2.39 -0.02 1.71 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.06 2.11 7.16 -2.39 -0.02 2.10 16 Total: -1.00 -69.80 382.87 2.58 -67.22 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.41 Total: 22.46 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.51 Total: -5.55 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.31 Total: -109.68 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.80 2.58 -67.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531357492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.937 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds