Wall clock time and date at job start Tue Mar 31 2020 15:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37675 * 127.14862 * 2 1 4 4 C 1.47699 * 126.46714 * 0.02749 * 3 2 1 5 5 N 1.32808 * 119.24827 * 0.03744 * 4 3 2 6 6 C 1.32140 * 120.72274 * 179.75579 * 5 4 3 7 7 C 1.38731 * 119.22246 * 0.51196 * 6 5 4 8 8 C 1.38724 * 118.60452 * 359.73968 * 7 6 5 9 9 N 1.32146 * 119.22028 * 0.02562 * 8 7 6 10 10 N 1.31313 * 107.06422 * 180.26859 * 3 2 1 11 11 N 1.28526 * 109.89331 * 359.76013 * 10 3 2 12 12 C 1.31600 * 110.05096 * 0.02562 * 11 10 3 13 13 N 1.38181 * 126.35377 * 179.97438 * 12 11 10 14 14 C 1.46850 * 111.00438 * 0.02562 * 13 12 11 15 15 C 1.53036 * 109.52384 * 185.84274 * 14 13 12 16 16 C 1.53114 * 109.27799 * 300.81924 * 15 14 13 17 17 C 1.53004 * 109.52406 * 177.56115 * 16 15 14 18 18 C 1.50691 * 109.47370 * 174.99921 * 17 16 15 19 19 H 1.08007 * 120.00111 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00299 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99869 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46907 * 90.00211 * 22 20 18 24 24 H 1.48507 * 109.46897 * 209.99905 * 22 20 18 25 25 H 1.48490 * 109.47084 * 329.99662 * 22 20 18 26 26 C 1.53120 * 109.16161 * 57.65854 * 16 15 14 27 27 C 1.46846 * 111.00128 * 124.23566 * 13 12 11 28 28 H 1.09002 * 109.46584 * 270.12766 * 1 2 3 29 29 H 1.09000 * 109.46739 * 30.12854 * 1 2 3 30 30 H 1.08995 * 109.46760 * 150.12754 * 1 2 3 31 31 H 1.08000 * 120.39407 * 180.25614 * 6 5 4 32 32 H 1.07999 * 120.69670 * 179.77067 * 7 6 5 33 33 H 1.07997 * 120.39239 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.45831 * 65.82063 * 14 13 12 35 35 H 1.08998 * 109.45719 * 305.85913 * 14 13 12 36 36 H 1.09004 * 109.50109 * 60.76189 * 15 14 13 37 37 H 1.08997 * 109.49831 * 180.87683 * 15 14 13 38 38 H 1.09002 * 109.52325 * 297.75085 * 16 15 14 39 39 H 1.08994 * 109.46866 * 295.00291 * 17 16 15 40 40 H 1.09002 * 109.46744 * 55.00018 * 17 16 15 41 41 H 0.96996 * 120.00289 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.50493 * 62.28140 * 26 16 15 43 43 H 1.09005 * 109.50270 * 182.40711 * 26 16 15 44 44 H 1.08993 * 109.46639 * 54.13903 * 27 13 12 45 45 H 1.09010 * 109.45973 * 294.17069 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2964 1.0974 0.0000 4 6 1.8798 2.5144 0.0006 5 7 0.5850 2.8101 0.0019 6 6 0.1798 4.0678 0.0073 7 6 1.1245 5.0838 0.0007 8 6 2.4686 4.7408 -0.0058 9 7 2.8086 3.4638 -0.0060 10 7 3.5297 0.6464 -0.0059 11 7 3.5254 -0.6388 -0.0044 12 6 2.2877 -1.0859 0.0019 13 7 1.8954 -2.4108 0.0047 14 6 3.0605 -3.3048 0.0003 15 6 2.5921 -4.7546 -0.1433 16 6 1.6624 -5.1033 1.0222 17 6 1.1425 -6.5322 0.8517 18 6 0.3272 -6.9175 2.0591 19 1 0.1928 -6.2134 2.8671 20 6 -0.2481 -8.1683 2.1319 21 7 -0.0858 -9.0251 1.1473 22 14 -1.2594 -8.6456 3.6282 23 1 -2.6804 -8.2780 3.4030 24 1 -1.1561 -10.1106 3.8487 25 1 -0.7456 -7.9280 4.8223 26 6 0.4824 -4.1274 1.0331 27 6 1.0120 -2.6957 1.1426 28 1 -0.3632 0.0023 1.0277 29 1 -0.3633 0.8888 -0.5158 30 1 -0.3633 -0.8911 -0.5118 31 1 -0.8744 4.3022 0.0125 32 1 0.8198 6.1199 0.0012 33 1 3.2283 5.5084 -0.0114 34 1 3.6089 -3.1911 0.9353 35 1 3.7113 -3.0488 -0.8358 36 1 2.0554 -4.8721 -1.0848 37 1 3.4561 -5.4189 -0.1309 38 1 2.2098 -5.0234 1.9613 39 1 0.5191 -6.5879 -0.0406 40 1 1.9854 -7.2156 0.7494 41 1 -0.4902 -9.9052 1.1987 42 1 -0.0874 -4.2351 0.1102 43 1 -0.1608 -4.3437 1.8861 44 1 0.1750 -1.9976 1.1364 45 1 1.5702 -2.5850 2.0724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563124424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:52 Heat of formation + Delta-G solvation = 137.949397 kcal Electronic energy + Delta-G solvation = -27371.084023 eV Core-core repulsion = 23618.391167 eV Total energy + Delta-G solvation = -3752.692856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.06342 -41.28768 -38.98659 -35.36431 -34.76467 -34.16267 -33.05834 -32.24300 -30.66232 -29.64239 -28.11739 -27.26028 -25.29663 -24.95134 -24.28069 -22.98823 -21.76746 -21.40076 -20.63743 -19.11138 -18.19140 -17.81928 -17.06953 -16.64499 -16.30737 -16.11639 -15.82098 -15.18893 -14.82404 -14.62208 -14.40294 -14.25354 -14.02037 -13.65725 -13.41387 -13.17540 -12.96066 -12.66791 -12.13051 -11.85637 -11.61050 -11.39420 -11.37514 -11.29413 -10.99371 -10.89682 -10.85466 -10.68877 -10.57263 -10.41190 -10.28360 -10.06108 -9.71090 -9.68482 -9.56946 -9.14894 -8.94260 -8.36471 -8.16927 -6.01016 -4.03014 0.03620 0.59582 1.70897 1.94455 2.65302 3.08117 3.29483 3.36702 3.39102 3.43772 3.60200 3.68866 4.07835 4.38006 4.43989 4.54152 4.57069 4.68400 4.85051 4.94530 5.00365 5.18583 5.22502 5.34703 5.35990 5.41983 5.48463 5.54439 5.63970 5.72175 5.76487 5.85344 5.99256 6.12060 6.15324 6.32234 6.38067 6.48354 6.58193 6.74962 6.97377 6.97593 7.07290 7.16708 7.50212 7.66133 7.80872 7.98870 8.41011 8.60188 9.03418 9.60803 11.10128 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.002354 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.709489 B =11893.262258 C =12657.868894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.462 5.462 3 C 0.193 3.807 4 C 0.413 3.587 5 N -0.517 5.517 6 C 0.156 3.844 7 C -0.230 4.230 8 C 0.158 3.842 9 N -0.481 5.481 10 N -0.213 5.213 11 N -0.323 5.323 12 C 0.392 3.608 13 N -0.447 5.447 14 C 0.074 3.926 15 C -0.114 4.114 16 C -0.085 4.085 17 C 0.029 3.971 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.099 4.099 27 C 0.050 3.950 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 28.105 -3.301 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.157 5.157 3 C -0.072 4.072 4 C 0.146 3.854 5 N -0.233 5.233 6 C -0.010 4.010 7 C -0.253 4.253 8 C -0.009 4.009 9 N -0.196 5.196 10 N -0.058 5.058 11 N -0.172 5.172 12 C 0.036 3.964 13 N -0.171 5.171 14 C -0.052 4.052 15 C -0.152 4.152 16 C -0.104 4.104 17 C -0.008 4.008 18 C -0.555 4.555 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.136 4.136 27 C -0.076 4.076 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.193 0.807 32 H 0.171 0.829 33 H 0.194 0.806 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.544 26.809 -3.789 27.081 hybrid contribution -2.062 0.755 1.382 2.595 sum -1.518 27.563 -2.406 27.710 Atomic orbital electron populations 1.22366 0.74267 1.05977 1.04221 1.45856 1.09088 1.04742 1.56046 1.20961 0.87018 0.85939 1.13255 1.19129 0.84710 0.89395 0.92186 1.68311 1.17168 1.22728 1.15069 1.23232 1.01181 0.86890 0.89705 1.23046 0.95542 1.02668 1.04002 1.23370 0.95512 0.92628 0.89358 1.68390 1.37713 1.00994 1.12492 1.74418 1.15776 1.02772 1.12803 1.74932 1.15088 1.02542 1.24643 1.22885 0.86478 0.87776 0.99277 1.58562 1.20147 0.95954 1.42394 1.22187 0.88664 0.91912 1.02462 1.21794 1.00321 0.92477 1.00629 1.21309 0.94421 0.98317 0.96326 1.19106 0.95977 0.88659 0.97079 1.21229 1.31369 0.98851 1.04041 0.92715 1.25017 0.96643 0.96715 0.96078 1.69959 1.44889 1.06820 1.31705 0.86656 0.80596 0.77693 0.83415 1.20747 1.21285 1.19968 1.21613 0.98901 0.89706 1.03429 1.22588 0.95088 1.00659 0.89306 0.90241 0.87317 0.88749 0.80748 0.82933 0.80630 0.92892 0.89691 0.91241 0.90827 0.92468 0.96404 0.96461 0.93039 0.91307 0.89825 0.90846 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 8.87 59.85 0.53 1.26 16 2 N -0.46 -6.37 3.23 -122.15 -0.39 -6.77 16 3 C 0.19 2.89 7.92 -153.69 -1.22 1.68 16 4 C 0.41 5.14 7.58 -156.84 -1.19 3.95 16 5 N -0.52 -4.99 7.84 -11.23 -0.09 -5.08 16 6 C 0.16 0.91 11.30 -17.24 -0.19 0.71 16 7 C -0.23 -1.05 10.17 -39.22 -0.40 -1.45 16 8 C 0.16 1.08 11.30 -17.24 -0.19 0.88 16 9 N -0.48 -5.61 10.34 -11.23 -0.12 -5.72 16 10 N -0.21 -3.72 12.19 32.59 0.40 -3.32 16 11 N -0.32 -5.70 11.23 30.26 0.34 -5.36 16 12 C 0.39 6.16 7.19 -319.28 -2.30 3.87 16 13 N -0.45 -6.78 4.69 -174.64 -0.82 -7.60 16 14 C 0.07 1.14 4.87 -3.83 -0.02 1.12 16 15 C -0.11 -1.89 5.38 -26.65 -0.14 -2.03 16 16 C -0.09 -1.63 2.20 -90.50 -0.20 -1.83 16 17 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 18 C -0.52 -13.86 8.45 -34.45 -0.29 -14.15 16 19 H 0.05 1.42 7.08 -52.48 -0.37 1.05 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.10 -1.67 5.15 -26.65 -0.14 -1.81 16 27 C 0.05 0.72 5.27 -3.83 -0.02 0.70 16 28 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 29 H 0.11 0.97 6.26 -51.93 -0.32 0.64 16 30 H 0.09 0.89 7.65 -51.93 -0.40 0.49 16 31 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 32 H 0.15 0.15 8.06 -52.49 -0.42 -0.28 16 33 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.49 7.05 -51.93 -0.37 1.13 16 44 H 0.07 0.90 5.20 -51.93 -0.27 0.63 16 45 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -34.10 365.70 -11.77 -45.88 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.33 Total: -3.06 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -5.99 Total: -5.04 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.06 Total: -59.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.10 -11.77 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563124424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.825 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds