Wall clock time and date at job start Tue Mar 31 2020 15:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37675 * 127.14862 * 2 1 4 4 C 1.47699 * 126.46714 * 0.02749 * 3 2 1 5 5 N 1.32808 * 119.24827 * 0.03744 * 4 3 2 6 6 C 1.32140 * 120.72274 * 179.75579 * 5 4 3 7 7 C 1.38731 * 119.22246 * 0.51196 * 6 5 4 8 8 C 1.38724 * 118.60452 * 359.73968 * 7 6 5 9 9 N 1.32146 * 119.22028 * 0.02562 * 8 7 6 10 10 N 1.31313 * 107.06422 * 180.26859 * 3 2 1 11 11 N 1.28526 * 109.89331 * 359.76013 * 10 3 2 12 12 C 1.31600 * 110.05096 * 0.02562 * 11 10 3 13 13 N 1.38181 * 126.35377 * 179.97438 * 12 11 10 14 14 C 1.46850 * 111.00438 * 0.02562 * 13 12 11 15 15 C 1.53036 * 109.52384 * 185.84274 * 14 13 12 16 16 C 1.53114 * 109.27799 * 300.81924 * 15 14 13 17 17 C 1.53004 * 109.52406 * 177.56115 * 16 15 14 18 18 C 1.50691 * 109.47370 * 174.99921 * 17 16 15 19 19 H 1.08007 * 120.00111 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00299 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99869 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46907 * 90.00211 * 22 20 18 24 24 H 1.48507 * 109.46897 * 209.99905 * 22 20 18 25 25 H 1.48490 * 109.47084 * 329.99662 * 22 20 18 26 26 C 1.53120 * 109.16161 * 57.65854 * 16 15 14 27 27 C 1.46846 * 111.00128 * 124.23566 * 13 12 11 28 28 H 1.09002 * 109.46584 * 270.12766 * 1 2 3 29 29 H 1.09000 * 109.46739 * 30.12854 * 1 2 3 30 30 H 1.08995 * 109.46760 * 150.12754 * 1 2 3 31 31 H 1.08000 * 120.39407 * 180.25614 * 6 5 4 32 32 H 1.07999 * 120.69670 * 179.77067 * 7 6 5 33 33 H 1.07997 * 120.39239 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.45831 * 65.82063 * 14 13 12 35 35 H 1.08998 * 109.45719 * 305.85913 * 14 13 12 36 36 H 1.09004 * 109.50109 * 60.76189 * 15 14 13 37 37 H 1.08997 * 109.49831 * 180.87683 * 15 14 13 38 38 H 1.09002 * 109.52325 * 297.75085 * 16 15 14 39 39 H 1.08994 * 109.46866 * 295.00291 * 17 16 15 40 40 H 1.09002 * 109.46744 * 55.00018 * 17 16 15 41 41 H 0.96996 * 120.00289 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.50493 * 62.28140 * 26 16 15 43 43 H 1.09005 * 109.50270 * 182.40711 * 26 16 15 44 44 H 1.08993 * 109.46639 * 54.13903 * 27 13 12 45 45 H 1.09010 * 109.45973 * 294.17069 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2964 1.0974 0.0000 4 6 1.8798 2.5144 0.0006 5 7 0.5850 2.8101 0.0019 6 6 0.1798 4.0678 0.0073 7 6 1.1245 5.0838 0.0007 8 6 2.4686 4.7408 -0.0058 9 7 2.8086 3.4638 -0.0060 10 7 3.5297 0.6464 -0.0059 11 7 3.5254 -0.6388 -0.0044 12 6 2.2877 -1.0859 0.0019 13 7 1.8954 -2.4108 0.0047 14 6 3.0605 -3.3048 0.0003 15 6 2.5921 -4.7546 -0.1433 16 6 1.6624 -5.1033 1.0222 17 6 1.1425 -6.5322 0.8517 18 6 0.3272 -6.9175 2.0591 19 1 0.1928 -6.2134 2.8671 20 6 -0.2481 -8.1683 2.1319 21 7 -0.0858 -9.0251 1.1473 22 14 -1.2594 -8.6456 3.6282 23 1 -2.6804 -8.2780 3.4030 24 1 -1.1561 -10.1106 3.8487 25 1 -0.7456 -7.9280 4.8223 26 6 0.4824 -4.1274 1.0331 27 6 1.0120 -2.6957 1.1426 28 1 -0.3632 0.0023 1.0277 29 1 -0.3633 0.8888 -0.5158 30 1 -0.3633 -0.8911 -0.5118 31 1 -0.8744 4.3022 0.0125 32 1 0.8198 6.1199 0.0012 33 1 3.2283 5.5084 -0.0114 34 1 3.6089 -3.1911 0.9353 35 1 3.7113 -3.0488 -0.8358 36 1 2.0554 -4.8721 -1.0848 37 1 3.4561 -5.4189 -0.1309 38 1 2.2098 -5.0234 1.9613 39 1 0.5191 -6.5879 -0.0406 40 1 1.9854 -7.2156 0.7494 41 1 -0.4902 -9.9052 1.1987 42 1 -0.0874 -4.2351 0.1102 43 1 -0.1608 -4.3437 1.8861 44 1 0.1750 -1.9976 1.1364 45 1 1.5702 -2.5850 2.0724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563124424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:51 Heat of formation + Delta-G solvation = 118.432138 kcal Electronic energy + Delta-G solvation = -27371.930355 eV Core-core repulsion = 23618.391167 eV Total energy + Delta-G solvation = -3753.539188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.16029 -41.89396 -40.29663 -36.59816 -36.09539 -34.79615 -34.43679 -33.49637 -31.96527 -30.90536 -29.40528 -28.49147 -26.10678 -26.06785 -25.44413 -24.22406 -23.24278 -22.37788 -21.97216 -20.57037 -19.05632 -18.51208 -18.35252 -17.94441 -17.70322 -17.01202 -16.56959 -16.52047 -16.01452 -15.75684 -15.45675 -15.25774 -15.11722 -14.70912 -14.51616 -14.42464 -14.24256 -13.96876 -13.57601 -13.30711 -13.07774 -12.87281 -12.69121 -12.56589 -12.30011 -12.17433 -12.03124 -11.95926 -11.92694 -11.65940 -11.50735 -11.39194 -11.22230 -10.95934 -10.77742 -10.49964 -10.46515 -10.31320 -9.31305 -8.14285 -6.23289 -0.64634 0.11122 0.72544 0.94285 1.42020 1.43030 1.53339 1.57147 2.24608 2.43983 2.60208 2.78096 3.02899 3.19388 3.50172 3.69294 3.74483 3.80198 3.88921 3.93975 4.03744 4.14910 4.23594 4.27764 4.28082 4.34861 4.38628 4.47440 4.61434 4.64093 4.74234 4.82805 4.85143 4.87775 4.95717 5.08622 5.26784 5.31852 5.33107 5.38768 5.41693 5.58182 5.63837 5.83294 5.91720 5.94073 6.02314 6.31915 6.88286 6.93197 7.45024 7.46985 8.97409 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.002354 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.709489 B =11893.262258 C =12657.868894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.458 5.458 3 C 0.206 3.794 4 C 0.376 3.624 5 N -0.522 5.522 6 C 0.146 3.854 7 C -0.195 4.195 8 C 0.140 3.860 9 N -0.518 5.518 10 N -0.259 5.259 11 N -0.353 5.353 12 C 0.380 3.620 13 N -0.446 5.446 14 C 0.084 3.916 15 C -0.105 4.105 16 C -0.079 4.079 17 C 0.035 3.965 18 C -0.527 4.527 19 H 0.063 0.937 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.958 3.042 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.265 1.265 26 C -0.090 4.090 27 C 0.059 3.941 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.216 0.784 32 H 0.200 0.800 33 H 0.206 0.794 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.052 0.948 39 H -0.006 1.006 40 H -0.012 1.012 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 31.678 -2.441 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.152 5.152 3 C -0.061 4.061 4 C 0.109 3.891 5 N -0.239 5.239 6 C -0.019 4.019 7 C -0.217 4.217 8 C -0.024 4.024 9 N -0.234 5.234 10 N -0.103 5.103 11 N -0.201 5.201 12 C 0.023 3.977 13 N -0.170 5.170 14 C -0.042 4.042 15 C -0.143 4.143 16 C -0.097 4.097 17 C -0.002 4.002 18 C -0.565 4.565 19 H 0.081 0.919 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.783 3.217 23 H -0.197 1.197 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.128 4.128 27 C -0.067 4.067 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.233 0.767 32 H 0.217 0.783 33 H 0.223 0.777 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.012 0.988 40 H 0.006 0.994 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.612 30.420 -2.925 30.603 hybrid contribution -1.452 -0.112 1.078 1.812 sum -3.064 30.308 -1.847 30.519 Atomic orbital electron populations 1.22631 0.72103 1.06871 1.05520 1.46045 1.10211 1.03805 1.55169 1.21550 0.86548 0.87518 1.10453 1.18882 0.86049 0.88359 0.95831 1.68267 1.15647 1.24970 1.14998 1.24060 1.03414 0.85803 0.88629 1.23567 0.94042 1.04653 0.99460 1.24030 0.97799 0.91499 0.89111 1.68287 1.38790 1.02835 1.13460 1.74322 1.17588 1.02730 1.15620 1.74791 1.16527 1.03132 1.25654 1.22800 0.86604 0.88063 1.00212 1.58572 1.19879 0.95851 1.42665 1.22013 0.88896 0.90957 1.02375 1.21660 0.99800 0.93528 0.99267 1.21153 0.95715 0.95740 0.97129 1.18982 0.94335 0.91436 0.95471 1.21646 1.31046 0.99044 1.04724 0.91901 1.25925 0.98029 0.96874 0.99107 1.70101 1.46277 1.07259 1.33903 0.85552 0.79162 0.77132 0.79830 1.19744 1.21368 1.18885 1.21451 0.97688 0.90745 1.02910 1.22487 0.95782 0.99373 0.89011 0.88638 0.86135 0.88153 0.76705 0.78305 0.77695 0.93298 0.89447 0.91529 0.90598 0.92926 0.98765 0.99384 0.93049 0.91627 0.90552 0.88124 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 8.87 127.77 1.13 2.38 16 2 N -0.46 -12.37 3.23 -540.38 -1.74 -14.11 16 3 C 0.21 6.23 7.92 136.12 1.08 7.30 16 4 C 0.38 9.07 7.58 137.22 1.04 10.11 16 5 N -0.52 -8.86 7.84 -189.45 -1.49 -10.35 16 6 C 0.15 1.10 11.30 84.76 0.96 2.06 16 7 C -0.20 -0.88 10.17 22.50 0.23 -0.65 16 8 C 0.14 1.54 11.30 84.76 0.96 2.49 16 9 N -0.52 -11.66 10.34 -189.46 -1.96 -13.61 16 10 N -0.26 -9.37 12.19 -50.82 -0.62 -9.99 16 11 N -0.35 -12.84 11.23 -58.19 -0.65 -13.49 16 12 C 0.38 12.00 7.19 260.25 1.87 13.87 16 13 N -0.45 -13.41 4.69 -706.44 -3.31 -16.73 16 14 C 0.08 2.62 4.87 86.32 0.42 3.04 16 15 C -0.10 -3.54 5.38 30.64 0.16 -3.37 16 16 C -0.08 -3.07 2.20 -10.71 -0.02 -3.09 16 17 C 0.03 1.76 4.45 29.85 0.13 1.90 16 18 C -0.53 -28.62 8.45 25.60 0.22 -28.41 16 19 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 20 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 21 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 22 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 26 C -0.09 -3.03 5.15 30.65 0.16 -2.87 16 27 C 0.06 1.66 5.27 86.33 0.45 2.11 16 28 H 0.10 1.42 7.73 -2.39 -0.02 1.40 16 29 H 0.12 1.89 6.26 -2.39 -0.01 1.88 16 30 H 0.10 1.69 7.65 -2.39 -0.02 1.67 16 31 H 0.22 -0.27 8.06 -2.91 -0.02 -0.29 16 32 H 0.20 -0.95 8.06 -2.91 -0.02 -0.97 16 33 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 2.70 7.91 -2.39 -0.02 2.68 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.68 7.05 -2.38 -0.02 2.66 16 44 H 0.10 2.26 5.20 -2.39 -0.01 2.25 16 45 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -78.46 365.70 2.80 -75.67 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.00 Total: 5.86 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 9.25 Total: 7.22 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -9.49 Total: -134.26 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -78.46 2.80 -75.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563124424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.100 kcal (2) G-P(sol) polarization free energy of solvation -78.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds