Wall clock time and date at job start Tue Mar 31 2020 15:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 N 1.46900 * 109.47370 * 239.99471 * 2 1 3 5 5 C 1.46898 * 110.99589 * 84.99775 * 4 2 1 6 6 C 1.53001 * 109.46893 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47164 * 60.00204 * 6 5 4 8 8 O 1.42903 * 109.47171 * 299.99938 * 6 5 4 9 9 C 1.53003 * 109.47376 * 180.02562 * 6 5 4 10 10 N 1.46900 * 109.47407 * 184.99739 * 9 6 5 11 11 C 1.46906 * 110.99546 * 66.04524 * 10 9 6 12 12 C 1.46894 * 111.00089 * 189.99447 * 10 9 6 13 13 C 1.50701 * 109.47049 * 170.00217 * 12 10 9 14 14 H 1.08000 * 119.99881 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00015 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00064 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46973 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46855 * 119.99904 * 17 15 13 20 20 H 1.48495 * 109.47115 * 240.00277 * 17 15 13 21 21 C 1.50705 * 109.46905 * 119.99714 * 2 1 3 22 22 C 1.38224 * 119.98601 * 100.00228 * 21 2 1 23 23 C 1.38192 * 120.04886 * 180.02562 * 22 21 2 24 24 C 1.38490 * 120.02348 * 359.96977 * 23 22 21 25 25 F 1.35099 * 120.01213 * 179.97438 * 24 23 22 26 26 C 1.38400 * 119.97843 * 0.02562 * 24 23 22 27 27 C 1.38444 * 119.94702 * 359.75840 * 26 24 23 28 28 F 1.35099 * 120.01464 * 180.23265 * 27 26 24 29 29 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47337 * 300.00231 * 1 2 3 31 31 H 1.09004 * 109.47057 * 60.00289 * 1 2 3 32 32 H 1.00904 * 110.99777 * 321.05042 * 4 2 1 33 33 H 1.08999 * 109.47049 * 60.00398 * 5 4 2 34 34 H 1.08997 * 109.47646 * 300.00448 * 5 4 2 35 35 H 0.96700 * 114.00311 * 300.00378 * 8 6 5 36 36 H 1.09005 * 109.46682 * 304.99749 * 9 6 5 37 37 H 1.08999 * 109.47221 * 64.99915 * 9 6 5 38 38 H 1.08991 * 109.47276 * 60.00231 * 11 10 9 39 39 H 1.09005 * 109.46723 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47097 * 299.99420 * 11 10 9 41 41 H 1.08995 * 109.47552 * 290.00132 * 12 10 9 42 42 H 1.09000 * 109.46814 * 50.00455 * 12 10 9 43 43 H 0.96998 * 120.00499 * 180.02562 * 16 15 13 44 44 H 1.07998 * 119.97714 * 359.97061 * 22 21 2 45 45 H 1.08004 * 119.98810 * 179.97438 * 23 22 21 46 46 H 1.07998 * 120.02792 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0825 0.2224 -2.3468 6 6 2.5951 -0.5334 -3.5744 7 1 1.9184 -1.3568 -3.8028 8 8 3.9000 -1.0499 -3.3051 9 6 2.6611 0.4197 -4.7694 10 7 3.0381 -0.3311 -5.9744 11 6 1.9882 -1.2882 -6.3483 12 6 3.3422 0.5780 -7.0875 13 6 3.9562 -0.2031 -8.2206 14 1 4.1052 -1.2684 -8.1237 15 6 4.3278 0.4422 -9.3810 16 7 4.1468 1.7395 -9.4988 17 14 5.0895 -0.5259 -10.7853 18 1 5.1847 -1.9581 -10.4048 19 1 4.2409 -0.3914 -11.9967 20 1 6.4476 0.0022 -11.0711 21 6 2.0323 -0.7104 1.2306 22 6 2.4586 -2.0225 1.1452 23 6 2.9190 -2.6753 2.2728 24 6 2.9542 -2.0152 3.4898 25 9 3.4038 -2.6537 4.5921 26 6 2.5277 -0.7014 3.5765 27 6 2.0709 -0.0470 2.4452 28 9 1.6587 1.2370 2.5273 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.4496 -1.4980 -1.4099 33 1 2.7588 1.0460 -2.1182 34 1 1.0871 0.6162 -2.5525 35 1 4.5557 -0.3714 -3.0934 36 1 1.6854 0.8819 -4.9198 37 1 3.4039 1.1937 -4.5764 38 1 1.0610 -0.7511 -6.5471 39 1 2.2928 -1.8303 -7.2436 40 1 1.8319 -1.9933 -5.5318 41 1 2.4231 1.0533 -7.4300 42 1 4.0430 1.3421 -6.7513 43 1 4.4079 2.1935 -10.3153 44 1 2.4311 -2.5381 0.1966 45 1 3.2514 -3.7006 2.2050 46 1 2.5552 -0.1857 4.5250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569109727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:22 Heat of formation + Delta-G solvation = -109.351430 kcal Electronic energy + Delta-G solvation = -27449.510477 eV Core-core repulsion = 23203.111915 eV Total energy + Delta-G solvation = -4246.398562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.35144 -49.32205 -39.67654 -38.27523 -36.58941 -35.28904 -32.54404 -32.04193 -31.19211 -29.60600 -28.70956 -27.07752 -25.85850 -24.20255 -23.79123 -22.93577 -21.46537 -21.07869 -20.15074 -18.56823 -17.55056 -16.94216 -16.47709 -16.30546 -16.15313 -15.92359 -15.64451 -15.43387 -15.03882 -15.00893 -14.73491 -14.55765 -14.35623 -14.16840 -13.67311 -13.47832 -13.30170 -13.08257 -12.89916 -12.64720 -12.34075 -12.04962 -11.96750 -11.86539 -11.60931 -11.42502 -11.33162 -11.11840 -10.91018 -10.77447 -10.66467 -10.30306 -9.99454 -9.59443 -9.40694 -9.11189 -8.97558 -8.65160 -8.44626 -7.21435 -6.03421 -4.04301 0.58889 0.68142 3.00916 3.31066 3.38449 3.43932 3.50130 3.66177 4.06281 4.25274 4.30472 4.42427 4.51802 4.65390 4.73619 4.81596 4.84792 4.92523 5.11341 5.18155 5.27475 5.33036 5.40860 5.43757 5.51173 5.55817 5.57988 5.61155 5.66014 5.74591 5.79311 5.91087 6.02827 6.16101 6.27311 6.37861 6.41062 6.70907 6.74140 7.06756 7.25922 7.31048 7.79945 8.03052 8.12524 8.19522 8.54367 9.04041 9.59999 11.07585 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.001960 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.764957 B =14281.764553 C =14786.705609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 H 0.092 0.908 4 N -0.670 5.670 5 C 0.026 3.974 6 C 0.117 3.883 7 H 0.093 0.907 8 O -0.536 6.536 9 C 0.025 3.975 10 N -0.529 5.529 11 C 0.036 3.964 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.112 4.112 22 C -0.036 4.036 23 C -0.164 4.164 24 C 0.122 3.878 25 F -0.134 7.134 26 C -0.195 4.195 27 C 0.129 3.871 28 F -0.131 7.131 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.344 0.656 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.369 0.631 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.008 0.992 39 H 0.075 0.925 40 H 0.046 0.954 41 H -0.011 1.011 42 H 0.028 0.972 43 H 0.260 0.740 44 H 0.152 0.848 45 H 0.142 0.858 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 -4.779 26.151 27.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.013 3.987 3 H 0.110 0.890 4 N -0.300 5.300 5 C -0.104 4.104 6 C 0.057 3.943 7 H 0.111 0.889 8 O -0.340 6.340 9 C -0.105 4.105 10 N -0.253 5.253 11 C -0.113 4.113 12 C 0.067 3.933 13 C -0.543 4.543 14 H 0.083 0.917 15 C -0.148 4.148 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.114 4.114 22 C -0.054 4.054 23 C -0.183 4.183 24 C 0.103 3.897 25 F -0.113 7.113 26 C -0.214 4.214 27 C 0.109 3.891 28 F -0.110 7.110 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.215 0.785 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.007 0.993 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.170 0.830 45 H 0.160 0.840 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.824 -5.355 26.195 27.594 hybrid contribution -1.049 1.035 -0.822 1.687 sum -7.873 -4.320 25.373 26.915 Atomic orbital electron populations 1.22481 0.95699 1.02707 1.02911 1.20306 0.92946 0.97546 0.87874 0.88992 1.60442 1.56963 1.09509 1.03135 1.22781 1.00365 0.95944 0.91278 1.21871 0.85965 0.96109 0.90400 0.88946 1.86582 1.18621 1.36870 1.91882 1.22727 0.99133 0.95968 0.92697 1.62025 1.39690 1.18667 1.04948 1.22259 0.92163 0.96063 1.00767 1.19746 0.95124 0.91162 0.87229 1.21207 1.39633 0.95147 0.98306 0.91722 1.25006 0.96122 0.94947 0.98713 1.69965 1.48435 1.08191 1.27416 0.86432 0.78855 0.80265 0.81829 1.19602 1.21172 1.20995 1.19943 1.02579 0.95481 0.93386 1.20829 0.93393 0.92702 0.98493 1.21296 1.03854 1.01859 0.91245 1.17330 0.98589 0.90455 0.83341 1.91527 1.86598 1.81484 1.51680 1.20949 1.05970 0.94834 0.99674 1.17112 0.99225 0.79324 0.93453 1.91517 1.87716 1.34826 1.96899 0.91921 0.91739 0.91738 0.83757 0.90468 0.94275 0.78481 0.95573 0.91108 0.97401 0.90643 0.93525 0.99347 0.95354 0.93012 0.83009 0.83981 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.14 37.16 0.34 -0.94 16 2 C 0.12 1.02 2.52 -68.86 -0.17 0.84 16 3 H 0.09 0.83 7.59 -51.93 -0.39 0.44 16 4 N -0.67 -5.94 4.95 -107.95 -0.53 -6.47 16 5 C 0.03 0.26 5.15 -3.82 -0.02 0.24 16 6 C 0.12 1.54 3.13 -26.73 -0.08 1.46 16 7 H 0.09 1.25 6.34 -51.93 -0.33 0.92 16 8 O -0.54 -7.93 13.15 -35.23 -0.46 -8.40 16 9 C 0.02 0.41 4.59 -3.82 -0.02 0.39 16 10 N -0.53 -11.23 4.70 -244.37 -1.15 -12.38 16 11 C 0.04 0.70 9.14 60.07 0.55 1.24 16 12 C 0.19 4.99 4.72 -4.98 -0.02 4.97 16 13 C -0.50 -14.21 8.46 -34.44 -0.29 -14.50 16 14 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 15 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 16 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 17 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.11 -0.96 5.09 -104.55 -0.53 -1.49 16 22 C -0.04 -0.28 9.32 -39.60 -0.37 -0.65 16 23 C -0.16 -1.25 10.03 -39.51 -0.40 -1.65 16 24 C 0.12 1.04 7.30 -39.43 -0.29 0.75 16 25 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 26 C -0.19 -1.61 10.01 -39.45 -0.39 -2.01 16 27 C 0.13 1.15 7.24 -39.43 -0.29 0.86 16 28 F -0.13 -1.25 16.66 2.25 0.04 -1.21 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 7.45 -51.93 -0.39 0.08 16 32 H 0.34 2.78 8.01 -39.29 -0.31 2.46 16 33 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.04 0.37 7.44 -51.93 -0.39 -0.01 16 35 H 0.37 4.63 9.05 45.56 0.41 5.04 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 37 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 40 H 0.05 0.77 6.37 -51.93 -0.33 0.44 16 41 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 42 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.15 1.09 6.83 -52.49 -0.36 0.74 16 45 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -31.11 384.13 -8.80 -39.90 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.15 Total: 2.36 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.08 Total: -9.07 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.95 Total: -44.87 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.46 Total: -8.40 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.11 -8.80 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569109727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.448 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds