Wall clock time and date at job start Tue Mar 31 2020 15:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 N 1.46900 * 109.47370 * 239.99471 * 2 1 3 5 5 C 1.46898 * 110.99589 * 84.99775 * 4 2 1 6 6 C 1.53001 * 109.46893 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47164 * 60.00204 * 6 5 4 8 8 O 1.42903 * 109.47171 * 299.99938 * 6 5 4 9 9 C 1.53003 * 109.47376 * 180.02562 * 6 5 4 10 10 N 1.46900 * 109.47407 * 184.99739 * 9 6 5 11 11 C 1.46906 * 110.99546 * 66.04524 * 10 9 6 12 12 C 1.46894 * 111.00089 * 189.99447 * 10 9 6 13 13 C 1.50701 * 109.47049 * 170.00217 * 12 10 9 14 14 H 1.08000 * 119.99881 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00015 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00064 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46973 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46855 * 119.99904 * 17 15 13 20 20 H 1.48495 * 109.47115 * 240.00277 * 17 15 13 21 21 C 1.50705 * 109.46905 * 119.99714 * 2 1 3 22 22 C 1.38224 * 119.98601 * 100.00228 * 21 2 1 23 23 C 1.38192 * 120.04886 * 180.02562 * 22 21 2 24 24 C 1.38490 * 120.02348 * 359.96977 * 23 22 21 25 25 F 1.35099 * 120.01213 * 179.97438 * 24 23 22 26 26 C 1.38400 * 119.97843 * 0.02562 * 24 23 22 27 27 C 1.38444 * 119.94702 * 359.75840 * 26 24 23 28 28 F 1.35099 * 120.01464 * 180.23265 * 27 26 24 29 29 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47337 * 300.00231 * 1 2 3 31 31 H 1.09004 * 109.47057 * 60.00289 * 1 2 3 32 32 H 1.00904 * 110.99777 * 321.05042 * 4 2 1 33 33 H 1.08999 * 109.47049 * 60.00398 * 5 4 2 34 34 H 1.08997 * 109.47646 * 300.00448 * 5 4 2 35 35 H 0.96700 * 114.00311 * 300.00378 * 8 6 5 36 36 H 1.09005 * 109.46682 * 304.99749 * 9 6 5 37 37 H 1.08999 * 109.47221 * 64.99915 * 9 6 5 38 38 H 1.08991 * 109.47276 * 60.00231 * 11 10 9 39 39 H 1.09005 * 109.46723 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47097 * 299.99420 * 11 10 9 41 41 H 1.08995 * 109.47552 * 290.00132 * 12 10 9 42 42 H 1.09000 * 109.46814 * 50.00455 * 12 10 9 43 43 H 0.96998 * 120.00499 * 180.02562 * 16 15 13 44 44 H 1.07998 * 119.97714 * 359.97061 * 22 21 2 45 45 H 1.08004 * 119.98810 * 179.97438 * 23 22 21 46 46 H 1.07998 * 120.02792 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0825 0.2224 -2.3468 6 6 2.5951 -0.5334 -3.5744 7 1 1.9184 -1.3568 -3.8028 8 8 3.9000 -1.0499 -3.3051 9 6 2.6611 0.4197 -4.7694 10 7 3.0381 -0.3311 -5.9744 11 6 1.9882 -1.2882 -6.3483 12 6 3.3422 0.5780 -7.0875 13 6 3.9562 -0.2031 -8.2206 14 1 4.1052 -1.2684 -8.1237 15 6 4.3278 0.4422 -9.3810 16 7 4.1468 1.7395 -9.4988 17 14 5.0895 -0.5259 -10.7853 18 1 5.1847 -1.9581 -10.4048 19 1 4.2409 -0.3914 -11.9967 20 1 6.4476 0.0022 -11.0711 21 6 2.0323 -0.7104 1.2306 22 6 2.4586 -2.0225 1.1452 23 6 2.9190 -2.6753 2.2728 24 6 2.9542 -2.0152 3.4898 25 9 3.4038 -2.6537 4.5921 26 6 2.5277 -0.7014 3.5765 27 6 2.0709 -0.0470 2.4452 28 9 1.6587 1.2370 2.5273 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.4496 -1.4980 -1.4099 33 1 2.7588 1.0460 -2.1182 34 1 1.0871 0.6162 -2.5525 35 1 4.5557 -0.3714 -3.0934 36 1 1.6854 0.8819 -4.9198 37 1 3.4039 1.1937 -4.5764 38 1 1.0610 -0.7511 -6.5471 39 1 2.2928 -1.8303 -7.2436 40 1 1.8319 -1.9933 -5.5318 41 1 2.4231 1.0533 -7.4300 42 1 4.0430 1.3421 -6.7513 43 1 4.4079 2.1935 -10.3153 44 1 2.4311 -2.5381 0.1966 45 1 3.2514 -3.7006 2.2050 46 1 2.5552 -0.1857 4.5250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569109727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:21 Heat of formation + Delta-G solvation = -131.117071 kcal Electronic energy + Delta-G solvation = -27450.454306 eV Core-core repulsion = 23203.111915 eV Total energy + Delta-G solvation = -4247.342391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.03785 -49.99106 -40.34989 -39.41930 -37.66827 -36.55924 -34.60433 -32.88888 -31.80641 -30.68056 -29.64921 -28.83688 -27.23589 -25.36680 -24.64701 -23.83079 -22.65029 -22.03186 -21.52165 -19.23416 -18.56678 -18.20888 -17.74034 -17.10332 -16.99253 -16.87024 -16.66067 -16.44051 -16.31076 -15.91309 -15.79910 -15.68919 -15.45120 -15.12468 -14.80422 -14.77281 -14.21689 -14.00420 -13.85153 -13.74556 -13.54702 -13.26176 -13.01063 -12.85556 -12.70734 -12.60695 -12.56691 -12.50667 -12.37245 -12.22693 -12.05083 -11.96297 -11.58553 -11.35403 -10.63061 -10.62295 -10.02792 -9.63205 -9.35346 -8.93654 -8.20629 -6.30245 -0.04977 0.05950 1.41001 1.42042 1.55758 2.38271 2.40609 2.80983 2.89991 3.11867 3.38973 3.42905 3.64257 3.69740 3.78654 3.94772 3.96595 4.10358 4.14075 4.26929 4.31924 4.35947 4.44694 4.54963 4.62524 4.70361 4.75152 4.78377 4.83210 4.86461 4.95624 4.97891 5.08584 5.15506 5.17894 5.19102 5.21312 5.27747 5.33655 5.65593 5.79165 5.97574 6.06502 6.33644 6.41299 6.65915 6.86489 7.07553 7.39527 8.90461 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.001960 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.764957 B =14281.764553 C =14786.705609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.128 3.872 3 H 0.084 0.916 4 N -0.671 5.671 5 C 0.038 3.962 6 C 0.131 3.869 7 H 0.096 0.904 8 O -0.552 6.552 9 C 0.023 3.977 10 N -0.541 5.541 11 C 0.039 3.961 12 C 0.207 3.793 13 C -0.521 4.521 14 H 0.061 0.939 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.115 4.115 22 C -0.038 4.038 23 C -0.159 4.159 24 C 0.111 3.889 25 F -0.140 7.140 26 C -0.196 4.196 27 C 0.116 3.884 28 F -0.138 7.138 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.351 0.649 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.011 0.989 39 H 0.053 0.947 40 H 0.080 0.920 41 H -0.039 1.039 42 H 0.003 0.997 43 H 0.264 0.736 44 H 0.161 0.839 45 H 0.160 0.840 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -6.177 26.698 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.018 3.982 3 H 0.102 0.898 4 N -0.302 5.302 5 C -0.092 4.092 6 C 0.071 3.929 7 H 0.113 0.887 8 O -0.357 6.357 9 C -0.106 4.106 10 N -0.265 5.265 11 C -0.109 4.109 12 C 0.081 3.919 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.117 4.117 22 C -0.056 4.056 23 C -0.178 4.178 24 C 0.091 3.909 25 F -0.118 7.118 26 C -0.215 4.215 27 C 0.096 3.904 28 F -0.116 7.116 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.170 0.830 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.098 0.902 41 H -0.022 1.022 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.179 0.821 45 H 0.177 0.823 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.090 -6.762 26.770 28.506 hybrid contribution -0.983 1.479 -0.920 2.001 sum -8.073 -5.283 25.850 27.591 Atomic orbital electron populations 1.22430 0.94743 1.03247 1.02881 1.20238 0.93614 0.96949 0.87410 0.89826 1.60369 1.57512 1.09527 1.02769 1.22548 1.00709 0.95580 0.90313 1.21730 0.85658 0.95442 0.90099 0.88672 1.86547 1.19477 1.37831 1.91885 1.22856 0.99099 0.96572 0.92091 1.61934 1.41386 1.18425 1.04705 1.22246 0.91484 0.95978 1.01177 1.19388 0.93022 0.91036 0.88451 1.21505 1.39874 0.95172 0.99381 0.92038 1.25926 0.96491 0.95949 1.01499 1.70083 1.49324 1.09817 1.28357 0.85329 0.77970 0.78968 0.78325 1.18792 1.20376 1.20399 1.20025 1.02544 0.95801 0.93286 1.20939 0.93267 0.92461 0.98913 1.21511 1.02936 1.02603 0.90739 1.17467 0.99172 0.90669 0.83554 1.91513 1.86755 1.81572 1.52006 1.21084 1.05460 0.94913 1.00060 1.17223 1.00048 0.79249 0.93900 1.91499 1.87906 1.35259 1.96954 0.91095 0.91947 0.91576 0.82968 0.90453 0.93251 0.77499 0.95007 0.91617 0.97063 0.92800 0.90178 1.02172 0.97920 0.92711 0.82141 0.82262 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.14 71.98 0.66 -1.51 16 2 C 0.13 1.89 2.52 44.17 0.11 2.00 16 3 H 0.08 1.40 7.59 -2.39 -0.02 1.38 16 4 N -0.67 -10.39 4.95 -495.45 -2.45 -12.84 16 5 C 0.04 0.69 5.15 86.30 0.44 1.14 16 6 C 0.13 3.20 3.13 30.60 0.10 3.30 16 7 H 0.10 2.30 6.34 -2.39 -0.02 2.29 16 8 O -0.55 -15.42 13.15 -148.98 -1.96 -17.37 16 9 C 0.02 0.75 4.59 86.30 0.40 1.15 16 10 N -0.54 -22.92 4.70 -927.05 -4.36 -27.28 16 11 C 0.04 1.48 9.14 127.69 1.17 2.65 16 12 C 0.21 11.05 4.72 85.56 0.40 11.46 16 13 C -0.52 -29.77 8.46 25.60 0.22 -29.55 16 14 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 15 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 16 N -0.94 -56.38 13.29 21.45 0.28 -56.10 16 17 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 C -0.11 -1.79 5.09 -19.81 -0.10 -1.89 16 22 C -0.04 -0.52 9.32 22.26 0.21 -0.31 16 23 C -0.16 -2.15 10.03 22.32 0.22 -1.93 16 24 C 0.11 1.75 7.30 22.37 0.16 1.91 16 25 F -0.14 -2.41 17.27 44.97 0.78 -1.64 16 26 C -0.20 -3.05 10.01 22.36 0.22 -2.83 16 27 C 0.12 1.95 7.24 22.37 0.16 2.11 16 28 F -0.14 -2.53 16.66 44.97 0.75 -1.78 16 29 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.81 7.45 -2.38 -0.02 0.79 16 32 H 0.35 4.70 8.01 -89.69 -0.72 3.99 16 33 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 34 H 0.05 0.82 7.44 -2.39 -0.02 0.80 16 35 H 0.38 9.00 9.05 -74.06 -0.67 8.33 16 36 H 0.03 1.01 8.12 -2.38 -0.02 0.99 16 37 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.05 2.24 6.76 -2.38 -0.02 2.23 16 40 H 0.08 2.46 6.37 -2.39 -0.02 2.45 16 41 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 42 H 0.00 0.15 7.93 -2.39 -0.02 0.14 16 43 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.16 1.92 6.83 -2.91 -0.02 1.90 16 45 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -66.74 384.13 -0.48 -67.22 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -0.38 Total: 15.13 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 4.84 Total: -11.90 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -6.53 Total: -96.21 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.96 Total: -17.37 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 1.53 Total: -3.42 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.74 -0.48 -67.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569109727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.898 kcal (2) G-P(sol) polarization free energy of solvation -66.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds