Wall clock time and date at job start Tue Mar 31 2020 16:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00170 * 2 1 4 4 H 1.48495 * 109.47070 * 239.99596 * 3 2 1 5 5 H 1.48501 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47563 * 119.99510 * 3 2 1 7 7 C 1.37876 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.45768 * 174.99794 * 10 9 7 12 12 C 1.53198 * 109.31243 * 181.38476 * 11 10 9 13 13 N 1.46930 * 108.77478 * 305.36871 * 12 11 10 14 14 C 1.34776 * 120.62747 * 233.58319 * 13 12 11 15 15 O 1.21273 * 120.00095 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99576 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.46953 * 180.02562 * 16 14 13 18 18 C 1.38301 * 119.88460 * 89.99835 * 17 16 14 19 19 C 1.38235 * 119.83497 * 180.02562 * 18 17 16 20 20 C 1.38172 * 120.14881 * 359.97438 * 19 18 17 21 21 C 1.38602 * 120.47675 * 0.02562 * 20 19 18 22 22 C 1.37828 * 119.88432 * 270.01833 * 17 16 14 23 23 N 1.39574 * 111.65132 * 179.97438 * 21 20 19 24 24 C 1.46532 * 110.08773 * 0.02562 * 23 21 20 25 25 C 1.51225 * 130.98616 * 180.02562 * 20 19 18 26 26 C 1.46930 * 118.73652 * 53.86066 * 13 12 11 27 27 C 1.53037 * 109.46238 * 295.06882 * 10 9 7 28 28 H 0.97004 * 119.99664 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46721 * 59.99798 * 9 7 2 30 30 H 1.09003 * 109.47137 * 299.99881 * 9 7 2 31 31 H 1.09000 * 109.45798 * 55.02985 * 10 9 7 32 32 H 1.09003 * 109.49559 * 61.43722 * 11 10 9 33 33 H 1.08995 * 109.53124 * 301.35692 * 11 10 9 34 34 H 1.08998 * 109.58574 * 185.57880 * 12 11 10 35 35 H 1.09005 * 109.69959 * 65.22514 * 12 11 10 36 36 H 1.09000 * 109.47746 * 59.99911 * 16 14 13 37 37 H 1.09006 * 109.47102 * 299.99959 * 16 14 13 38 38 H 1.08003 * 120.08617 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.92782 * 179.72026 * 19 18 17 40 40 H 1.08001 * 119.85762 * 0.02562 * 22 17 16 41 41 H 0.96997 * 124.95840 * 180.02562 * 23 21 20 42 42 H 1.08998 * 110.30515 * 118.92542 * 24 23 21 43 43 H 1.09005 * 110.29773 * 241.07158 * 24 23 21 44 44 H 1.09000 * 110.41812 * 61.24198 * 25 20 19 45 45 H 1.08996 * 110.52338 * 298.82501 * 25 20 19 46 46 H 1.08998 * 109.58935 * 65.92629 * 26 13 12 47 47 H 1.08996 * 109.58180 * 186.35278 * 26 13 12 48 48 H 1.09003 * 109.49844 * 298.56885 * 27 10 9 49 49 H 1.09003 * 109.49335 * 58.66138 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4839 -4.9837 0.1263 12 6 2.4843 -6.1434 0.1608 13 7 3.3504 -6.0562 -1.0229 14 6 3.4922 -7.1114 -1.8492 15 8 2.9023 -8.1457 -1.6187 16 6 4.3847 -7.0064 -3.0589 17 6 4.3685 -8.3128 -3.8099 18 6 3.4319 -8.5240 -4.8053 19 6 3.4177 -9.7229 -5.4932 20 6 4.3367 -10.7087 -5.1885 21 6 5.2795 -10.5073 -4.1927 22 6 5.2870 -9.2933 -3.5021 23 7 6.1113 -11.6176 -4.0389 24 6 5.7299 -12.6674 -4.9874 25 6 4.5421 -12.0881 -5.7732 26 6 4.0637 -4.7987 -1.2851 27 6 3.0412 -3.6524 -1.3065 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.9289 -3.5553 0.8427 32 1 0.8182 -5.1028 -0.7285 33 1 0.8984 -4.9808 1.0457 34 1 1.9457 -7.0910 0.1505 35 1 3.0916 -6.0781 1.0637 36 1 5.4029 -6.7822 -2.7410 37 1 4.0233 -6.2095 -3.7090 38 1 2.7128 -7.7543 -5.0441 39 1 2.6841 -9.8911 -6.2677 40 1 6.0153 -9.1223 -2.7231 41 1 6.8360 -11.6845 -3.3978 42 1 6.5580 -12.8874 -5.6612 43 1 5.4266 -13.5677 -4.4531 44 1 4.7847 -12.0194 -6.8337 45 1 3.6534 -12.7018 -5.6262 46 1 4.7969 -4.6234 -0.4979 47 1 4.5675 -4.8588 -2.2498 48 1 2.3609 -3.7840 -2.1478 49 1 3.5646 -2.7015 -1.4065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572525807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:55 Heat of formation + Delta-G solvation = -21.072968 kcal Electronic energy + Delta-G solvation = -27306.895279 eV Core-core repulsion = 23618.554289 eV Total energy + Delta-G solvation = -3688.340991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.58900 -39.82736 -37.50121 -36.43827 -33.98434 -32.74661 -32.12622 -31.23140 -30.40434 -29.14188 -28.14463 -26.85200 -24.49632 -23.07096 -22.77848 -22.07595 -21.79211 -20.81855 -19.67821 -18.55247 -17.51296 -16.97096 -16.28748 -15.91761 -15.80800 -15.70892 -15.31398 -14.96798 -14.54418 -14.01965 -13.78815 -13.75556 -13.66307 -13.15367 -13.09121 -12.82665 -12.66555 -12.49652 -12.37649 -12.32172 -12.15682 -11.89812 -11.73624 -11.56132 -11.18426 -10.99221 -10.93100 -10.78565 -10.68645 -10.46242 -10.21769 -10.12396 -9.73770 -9.54552 -9.25922 -8.98099 -8.66916 -8.36329 -8.30132 -7.45156 -6.00425 -4.02657 1.31710 1.57240 2.80139 3.14724 3.24154 3.31262 3.36697 3.37964 3.78511 4.40235 4.44294 4.45688 4.68158 4.75832 4.81403 4.89541 5.06740 5.16500 5.21468 5.34215 5.35606 5.39542 5.42878 5.46750 5.50580 5.51332 5.55778 5.60976 5.69441 5.77301 5.78441 5.94286 6.01403 6.09875 6.27739 6.39084 6.39903 6.46219 6.50860 6.54592 6.67818 6.71522 6.97016 6.99748 7.10787 7.10944 7.61168 7.62727 7.66277 7.81191 7.99208 8.36253 8.41304 9.03639 9.61041 11.10713 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.002075 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.419156 B =13492.626733 C =13672.744876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.129 4.129 12 C 0.113 3.887 13 N -0.607 5.607 14 C 0.516 3.484 15 O -0.541 6.541 16 C -0.103 4.103 17 C -0.016 4.016 18 C -0.154 4.154 19 C -0.060 4.060 20 C -0.178 4.178 21 C 0.194 3.806 22 C -0.165 4.165 23 N -0.750 5.750 24 C 0.120 3.880 25 C -0.083 4.083 26 C 0.102 3.898 27 C -0.119 4.119 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.410 0.590 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.059 0.941 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.516 -21.948 -10.303 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.167 4.167 12 C -0.009 4.009 13 N -0.341 5.341 14 C 0.304 3.696 15 O -0.418 6.418 16 C -0.143 4.143 17 C -0.017 4.017 18 C -0.174 4.174 19 C -0.079 4.079 20 C -0.183 4.183 21 C 0.091 3.909 22 C -0.187 4.187 23 N -0.384 5.384 24 C -0.005 4.005 25 C -0.120 4.120 26 C -0.021 4.021 27 C -0.157 4.157 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.247 0.753 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.072 -22.536 -10.234 27.537 hybrid contribution 0.740 1.116 0.399 1.397 sum 12.812 -21.420 -9.835 26.827 Atomic orbital electron populations 1.69955 1.06046 1.26640 1.50778 1.25029 0.94815 0.99186 0.95484 0.86700 0.79596 0.83391 0.78537 1.20286 1.21394 1.20322 1.21195 0.92863 0.90958 1.50497 0.92659 1.19122 0.93616 0.91005 0.97204 1.21189 0.97988 0.94668 0.96102 1.22019 0.97635 0.94838 1.02206 1.21643 0.92571 1.00243 0.86482 1.48190 1.46672 1.12973 1.26263 1.20419 0.82232 0.83178 0.83802 1.90689 1.48052 1.29103 1.73998 1.20726 1.01122 0.96869 0.95566 1.18888 0.94366 0.93832 0.94656 1.20685 1.00154 0.98050 0.98510 1.20245 0.96795 0.92102 0.98764 1.19812 1.00066 0.97068 1.01334 1.18216 0.90473 0.88102 0.94090 1.20068 1.03194 0.92509 1.02965 1.44663 1.37029 1.14539 1.42169 1.21732 0.96773 0.90792 0.91162 1.20986 0.98033 0.93296 0.99667 1.22051 0.95131 0.83777 1.01109 1.21977 0.97512 0.97115 0.99089 0.92994 0.96639 0.96611 0.92389 0.92089 0.91220 0.89772 0.91990 0.88172 0.87673 0.86100 0.86326 0.86831 0.75294 0.91822 0.91827 0.90104 0.90060 0.91497 0.90395 0.92203 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.86 8.39 -34.44 -0.29 -14.15 16 8 H 0.06 1.42 7.06 -52.48 -0.37 1.05 16 9 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 10 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 11 C -0.13 -2.18 5.36 -26.61 -0.14 -2.33 16 12 C 0.11 1.71 6.43 -3.71 -0.02 1.69 16 13 N -0.61 -8.82 2.97 -172.50 -0.51 -9.33 16 14 C 0.52 7.68 7.69 -10.99 -0.08 7.60 16 15 O -0.54 -9.99 15.45 5.56 0.09 -9.90 16 16 C -0.10 -1.17 4.17 -29.04 -0.12 -1.29 16 17 C -0.02 -0.20 4.36 -104.75 -0.46 -0.66 16 18 C -0.15 -1.88 9.71 -39.56 -0.38 -2.26 16 19 C -0.06 -0.68 10.04 -39.61 -0.40 -1.08 16 20 C -0.18 -1.97 6.23 -104.25 -0.65 -2.62 16 21 C 0.19 2.23 7.03 -83.66 -0.59 1.64 16 22 C -0.16 -2.00 9.72 -39.19 -0.38 -2.38 16 23 N -0.75 -6.63 6.53 -58.12 -0.38 -7.01 16 24 C 0.12 0.82 7.96 -3.64 -0.03 0.80 16 25 C -0.08 -0.64 6.94 -27.24 -0.19 -0.83 16 26 C 0.10 1.33 6.37 -3.49 -0.02 1.31 16 27 C -0.12 -1.98 5.21 -26.39 -0.14 -2.12 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.34 7.01 -51.93 -0.36 0.97 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.11 1.04 7.64 -51.93 -0.40 0.64 16 38 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.41 2.84 8.96 -40.82 -0.37 2.47 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.08 1.49 6.91 -51.93 -0.36 1.14 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -33.09 388.26 -11.60 -44.69 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.05 Total: 1.72 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -4.31 Total: -16.39 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.15 Total: -42.05 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.09 -11.60 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572525807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.613 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds