Wall clock time and date at job start Tue Mar 31 2020 15:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99983 * 2 1 4 4 C 1.50699 * 109.47042 * 293.94663 * 3 2 1 5 5 H 1.07994 * 119.99950 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99802 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00248 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99915 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46831 * 89.99892 * 8 6 4 10 10 H 1.48497 * 109.47245 * 210.00115 * 8 6 4 11 11 H 1.48504 * 109.46836 * 330.00403 * 8 6 4 12 12 C 1.46906 * 110.99414 * 123.95183 * 2 1 3 13 13 C 1.53009 * 109.46638 * 164.00950 * 12 2 1 14 14 H 1.09002 * 109.47124 * 58.50892 * 13 12 2 15 15 O 1.42900 * 109.47205 * 298.50775 * 13 12 2 16 16 C 1.52995 * 109.46701 * 178.50936 * 13 12 2 17 17 N 1.46903 * 109.46984 * 185.00437 * 16 13 12 18 18 C 1.46896 * 111.00045 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46936 * 179.97438 * 18 17 16 20 20 C 1.50711 * 109.46870 * 180.02562 * 19 18 17 21 21 C 1.38254 * 119.99562 * 264.72028 * 20 19 18 22 22 C 1.38213 * 120.06506 * 179.77012 * 21 20 19 23 23 C 1.38249 * 120.07243 * 0.50815 * 22 21 20 24 24 C 1.38368 * 120.00359 * 359.74863 * 23 22 21 25 25 F 1.35097 * 120.04055 * 179.97438 * 24 23 22 26 26 C 1.38364 * 119.99967 * 85.00121 * 20 19 18 27 27 F 1.35099 * 120.03726 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.47284 * 301.53892 * 1 2 3 29 29 H 1.09005 * 109.47038 * 61.53267 * 1 2 3 30 30 H 1.08994 * 109.47524 * 181.53116 * 1 2 3 31 31 H 1.08996 * 109.47407 * 53.95379 * 3 2 1 32 32 H 1.09010 * 109.46644 * 173.95450 * 3 2 1 33 33 H 0.97001 * 119.99977 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47430 * 44.01256 * 12 2 1 35 35 H 1.08998 * 109.47256 * 284.00808 * 12 2 1 36 36 H 0.96700 * 113.99996 * 300.00471 * 15 13 12 37 37 H 1.08994 * 109.47544 * 65.00244 * 16 13 12 38 38 H 1.09009 * 109.47343 * 304.99596 * 16 13 12 39 39 H 1.00903 * 110.99421 * 303.94793 * 17 16 13 40 40 H 1.09000 * 109.47538 * 59.99784 * 18 17 16 41 41 H 1.08998 * 109.47311 * 299.99131 * 18 17 16 42 42 H 1.08997 * 109.47235 * 299.99658 * 19 18 17 43 43 H 1.09001 * 109.47248 * 60.00113 * 19 18 17 44 44 H 1.08002 * 119.96594 * 0.02562 * 21 20 19 45 45 H 1.08008 * 119.96295 * 180.25487 * 22 21 20 46 46 H 1.08005 * 120.00304 * 179.76586 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0742 1.5113 -2.0485 6 6 2.0278 3.3490 -1.5290 7 7 2.7137 4.0012 -0.6158 8 14 1.5830 4.1868 -3.1383 9 1 0.2711 4.8678 -2.9956 10 1 2.6256 5.1873 -3.4802 11 1 1.4985 3.1709 -4.2183 12 6 1.9953 -0.7660 1.1377 13 6 3.4728 -1.0840 0.8985 14 1 4.0282 -0.1550 0.7698 15 8 3.6033 -1.8840 -0.2784 16 6 4.0305 -1.8496 2.1000 17 7 5.4752 -2.0502 1.9250 18 6 6.0464 -2.7843 3.0620 19 6 7.5488 -2.9740 2.8437 20 6 8.1346 -3.7277 4.0100 21 6 8.7145 -3.0372 5.0580 22 6 9.2479 -3.7267 6.1305 23 6 9.2122 -5.1086 6.1527 24 6 8.6373 -5.8027 5.1028 25 9 8.6024 -7.1531 5.1235 26 6 8.0973 -5.1107 4.0290 27 9 7.5354 -5.7862 3.0028 28 1 -0.3634 0.5375 0.8759 29 1 -0.3633 0.4899 -0.9035 30 1 -0.3634 -1.0272 0.0275 31 1 1.5611 1.9273 0.8309 32 1 3.0798 1.3443 0.1082 33 1 2.9890 4.9170 -0.7781 34 1 1.4355 -1.6956 1.2400 35 1 1.8933 -0.1782 2.0499 36 1 3.1332 -2.7279 -0.2345 37 1 3.5358 -2.8178 2.1755 38 1 3.8509 -1.2777 3.0105 39 1 5.6719 -2.5220 1.0549 40 1 5.5655 -3.7590 3.1438 41 1 5.8808 -2.2193 3.9793 42 1 7.7142 -3.5392 1.9265 43 1 8.0300 -1.9994 2.7617 44 1 8.7470 -1.9578 5.0406 45 1 9.6969 -3.1855 6.9504 46 1 9.6328 -5.6464 6.9896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576629947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:02 Heat of formation + Delta-G solvation = -139.799545 kcal Electronic energy + Delta-G solvation = -27047.176971 eV Core-core repulsion = 22799.458079 eV Total energy + Delta-G solvation = -4247.718891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.53917 -49.63090 -40.15712 -39.57305 -37.62230 -36.49532 -34.59438 -33.88093 -31.29507 -31.29019 -29.51296 -28.98559 -26.76543 -25.30810 -23.96124 -23.82192 -22.85505 -22.29049 -21.63103 -18.93031 -18.61446 -18.34585 -17.93599 -17.53105 -17.35148 -17.22974 -16.59235 -16.38157 -16.06835 -15.98333 -15.79038 -15.75274 -15.44680 -15.20398 -15.00621 -14.74360 -14.28282 -14.06192 -13.96769 -13.64684 -13.49767 -13.20893 -13.09124 -12.95222 -12.83366 -12.59786 -12.55716 -12.51336 -12.29991 -12.16842 -12.11710 -12.03240 -11.49187 -11.30850 -10.78453 -10.59073 -9.89713 -9.77236 -9.42163 -8.94821 -8.18877 -6.28141 -0.08660 -0.03376 1.40434 1.42677 1.54317 2.36346 2.41439 2.74604 2.92289 3.13422 3.29861 3.39652 3.62685 3.70418 3.74628 3.95348 4.01170 4.10237 4.15623 4.21980 4.22769 4.34529 4.43252 4.51204 4.58890 4.61963 4.72864 4.77017 4.78096 4.82159 4.94608 4.99320 5.06701 5.08148 5.14245 5.21144 5.26655 5.32674 5.33712 5.66202 5.76804 5.99000 6.08524 6.35619 6.38506 6.65751 6.87476 7.03710 7.40876 8.92280 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.001886 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.955202 B =14842.950625 C =15396.615401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.060 0.940 6 C -0.001 4.001 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.026 3.974 13 C 0.124 3.876 14 H 0.067 0.933 15 O -0.560 6.560 16 C 0.044 3.956 17 N -0.695 5.695 18 C 0.072 3.928 19 C -0.076 4.076 20 C -0.091 4.091 21 C -0.093 4.093 22 C -0.086 4.086 23 C -0.126 4.126 24 C 0.043 3.957 25 F -0.144 7.144 26 C 0.041 3.959 27 F -0.144 7.144 28 H 0.008 0.992 29 H 0.054 0.946 30 H 0.082 0.918 31 H -0.042 1.042 32 H 0.006 0.994 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.029 0.971 36 H 0.378 0.622 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.347 0.653 40 H 0.024 0.976 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.164 0.836 45 H 0.177 0.823 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 -18.993 16.697 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.103 4.103 13 C 0.064 3.936 14 H 0.085 0.915 15 O -0.365 6.365 16 C -0.086 4.086 17 N -0.327 5.327 18 C -0.057 4.057 19 C -0.114 4.114 20 C -0.092 4.092 21 C -0.111 4.111 22 C -0.103 4.103 23 C -0.144 4.144 24 C 0.024 3.976 25 F -0.123 7.123 26 C 0.021 3.979 27 F -0.123 7.123 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.101 0.899 31 H -0.024 1.024 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.226 0.774 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.166 0.834 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.181 0.819 45 H 0.195 0.805 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.198 -18.024 16.312 27.661 hybrid contribution -1.272 -0.734 -0.256 1.490 sum 11.927 -18.758 16.056 27.421 Atomic orbital electron populations 1.22217 0.87499 1.01089 0.99898 1.61946 1.07864 1.15239 1.41659 1.19384 0.93865 0.83786 0.94633 1.21476 1.34684 0.97461 1.02500 0.92184 1.25928 0.95091 0.98133 1.00734 1.70084 1.39322 1.11851 1.36184 0.85388 0.77997 0.78056 0.79205 1.19655 1.20659 1.19148 1.22790 0.96742 0.98801 0.91937 1.21735 0.93746 0.93622 0.84540 0.91485 1.86651 1.75745 1.34484 1.39644 1.22479 0.88205 0.99465 0.98484 1.60341 1.12566 1.54125 1.05693 1.21866 0.93470 0.95817 0.94587 1.20491 0.95001 1.01026 0.94871 1.19921 1.00388 0.90055 0.98877 1.21474 0.95742 1.02164 0.91742 1.21546 0.97205 0.92555 0.99017 1.21465 0.99657 0.95795 0.97531 1.18060 1.05177 0.77139 0.97270 1.91490 1.94947 1.29168 1.96684 1.17911 1.02458 0.90905 0.86635 1.91471 1.83167 1.80380 1.57279 0.97323 0.92700 0.89942 1.02394 0.97612 0.92724 0.88602 0.95327 0.77374 0.93083 0.90047 0.83378 0.95738 0.90150 0.91188 0.88128 0.81850 0.80537 0.81404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.32 127.69 1.19 2.77 16 2 N -0.54 -23.71 4.60 -927.03 -4.27 -27.98 16 3 C 0.21 11.49 4.57 85.56 0.39 11.88 16 4 C -0.52 -30.68 8.54 25.60 0.22 -30.47 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 6 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 7 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 8 Si 0.97 45.52 29.54 68.60 2.03 47.54 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.03 0.89 4.63 86.30 0.40 1.29 16 13 C 0.12 4.05 3.23 30.60 0.10 4.15 16 14 H 0.07 2.84 6.55 -2.39 -0.02 2.82 16 15 O -0.56 -18.35 12.75 -148.98 -1.90 -20.25 16 16 C 0.04 1.06 5.36 86.30 0.46 1.53 16 17 N -0.70 -16.62 6.50 -513.89 -3.34 -19.96 16 18 C 0.07 1.37 5.67 86.31 0.49 1.86 16 19 C -0.08 -1.30 5.38 29.85 0.16 -1.14 16 20 C -0.09 -1.43 5.14 -19.83 -0.10 -1.53 16 21 C -0.09 -0.95 9.68 22.27 0.22 -0.73 16 22 C -0.09 -0.61 10.04 22.27 0.22 -0.39 16 23 C -0.13 -1.31 10.02 22.30 0.22 -1.09 16 24 C 0.04 0.77 7.31 22.41 0.16 0.93 16 25 F -0.14 -3.02 17.18 44.97 0.77 -2.24 16 26 C 0.04 0.80 7.25 22.41 0.16 0.97 16 27 F -0.14 -3.45 16.48 44.97 0.74 -2.70 16 28 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 29 H 0.05 2.28 6.90 -2.38 -0.02 2.27 16 30 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 31 H -0.04 -2.46 8.11 -2.39 -0.02 -2.48 16 32 H 0.01 0.35 6.38 -2.38 -0.02 0.33 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.10 2.54 7.88 -2.39 -0.02 2.52 16 35 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 36 H 0.38 8.88 9.05 -74.06 -0.67 8.21 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.35 8.47 8.29 -89.69 -0.74 7.73 16 40 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.31 7.79 -2.39 -0.02 1.29 16 43 H 0.10 1.58 8.05 -2.39 -0.02 1.56 16 44 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 45 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 46 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -73.54 388.55 -1.34 -74.88 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.41 Total: 17.45 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 4.76 Total: -9.58 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -7.32 Total: -105.10 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.90 Total: -20.25 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 1.51 Total: -4.95 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -73.54 -1.34 -74.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576629947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.920 kcal (2) G-P(sol) polarization free energy of solvation -73.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds