Wall clock time and date at job start Tue Mar 31 2020 15:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99839 * 2 1 4 4 C 1.50701 * 109.46916 * 66.05307 * 3 2 1 5 5 H 1.07999 * 119.99721 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99991 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99737 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00002 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47027 * 90.00009 * 8 6 4 10 10 H 1.48496 * 109.46888 * 209.99621 * 8 6 4 11 11 H 1.48499 * 109.46982 * 329.99710 * 8 6 4 12 12 C 1.46906 * 110.99847 * 236.04960 * 2 1 3 13 13 C 1.52996 * 109.47172 * 293.95378 * 12 2 1 14 14 H 1.09001 * 109.47192 * 59.99522 * 13 12 2 15 15 O 1.42903 * 109.46973 * 299.99714 * 13 12 2 16 16 C 1.53003 * 109.47118 * 180.02562 * 13 12 2 17 17 N 1.46903 * 109.46899 * 185.00138 * 16 13 12 18 18 C 1.46898 * 110.99673 * 179.97438 * 17 16 13 19 19 C 1.53006 * 109.47006 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47184 * 179.97438 * 19 18 17 21 21 C 1.38223 * 119.99160 * 264.72991 * 20 19 18 22 22 C 1.38188 * 120.05004 * 179.72596 * 21 20 19 23 23 C 1.38489 * 120.02688 * 0.54743 * 22 21 20 24 24 F 1.35098 * 120.01377 * 179.74954 * 23 22 21 25 25 C 1.38401 * 119.97372 * 359.72408 * 23 22 21 26 26 C 1.38443 * 119.95075 * 0.02562 * 25 23 22 27 27 F 1.35096 * 120.01394 * 179.97438 * 26 25 23 28 28 H 1.08997 * 109.46781 * 183.95063 * 1 2 3 29 29 H 1.09003 * 109.46873 * 303.94746 * 1 2 3 30 30 H 1.08996 * 109.47442 * 63.94936 * 1 2 3 31 31 H 1.08998 * 109.46862 * 186.04790 * 3 2 1 32 32 H 1.08995 * 109.47447 * 306.05009 * 3 2 1 33 33 H 0.97000 * 120.00016 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46997 * 173.95337 * 12 2 1 35 35 H 1.09000 * 109.46809 * 53.95450 * 12 2 1 36 36 H 0.96699 * 114.00334 * 300.00142 * 15 13 12 37 37 H 1.08993 * 109.47042 * 65.00077 * 16 13 12 38 38 H 1.08995 * 109.46589 * 304.99318 * 16 13 12 39 39 H 1.00906 * 110.99345 * 303.95072 * 17 16 13 40 40 H 1.09001 * 109.47062 * 59.99745 * 18 17 16 41 41 H 1.08993 * 109.47084 * 299.99192 * 18 17 16 42 42 H 1.09001 * 109.46801 * 300.00064 * 19 18 17 43 43 H 1.09001 * 109.46998 * 59.99660 * 19 18 17 44 44 H 1.08005 * 119.97211 * 359.97438 * 21 20 19 45 45 H 1.07999 * 119.98328 * 180.25010 * 22 21 20 46 46 H 1.07997 * 120.02614 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0268 3.3494 1.5286 7 7 2.7119 4.0019 0.6151 8 14 1.5820 4.1871 3.1379 9 1 2.6587 3.9510 4.1330 10 1 1.4294 5.6466 2.9105 11 1 0.3042 3.6295 3.6494 12 6 1.9955 -0.7659 -1.1377 13 6 1.6315 -2.2425 -0.9705 14 1 0.5472 -2.3474 -0.9324 15 8 2.2010 -2.7392 0.2424 16 6 2.1803 -3.0404 -2.1551 17 7 1.7298 -4.4352 -2.0569 18 6 2.2383 -5.2330 -3.1806 19 6 1.7499 -6.6765 -3.0435 20 6 2.2710 -7.4948 -4.1966 21 6 1.4850 -7.6892 -5.3169 22 6 1.9639 -8.4347 -6.3773 23 6 3.2277 -8.9973 -6.3141 24 9 3.6936 -9.7303 -7.3490 25 6 4.0135 -8.8080 -5.1907 26 6 3.5348 -8.0567 -4.1310 27 9 4.3005 -7.8715 -3.0335 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5739 0.8525 30 1 -0.3634 0.4513 -0.9232 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8308 33 1 2.9864 4.9180 0.7770 34 1 3.0797 -0.6611 -1.1757 35 1 1.5611 -0.3871 -2.0628 36 1 3.1653 -2.6771 0.2784 37 1 3.2697 -3.0086 -2.1411 38 1 1.8159 -2.6057 -3.0859 39 1 1.9999 -4.8409 -1.1734 40 1 3.3282 -5.2163 -3.1741 41 1 1.8740 -4.8134 -4.1183 42 1 2.1144 -7.0958 -2.1058 43 1 0.6600 -6.6934 -3.0497 44 1 0.4973 -7.2548 -5.3650 45 1 1.3503 -8.5825 -7.2538 46 1 4.9994 -9.2461 -5.1407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578435862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:11 Heat of formation + Delta-G solvation = -117.929151 kcal Electronic energy + Delta-G solvation = -26670.296772 eV Core-core repulsion = 22423.526252 eV Total energy + Delta-G solvation = -4246.770520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.48349 -49.44643 -39.57766 -38.36025 -36.37682 -35.25921 -33.05150 -32.50103 -31.34758 -30.04036 -28.11853 -26.99034 -25.66969 -23.88815 -23.69353 -22.79435 -21.75873 -21.14769 -20.13845 -18.69439 -17.76362 -16.72936 -16.59777 -16.40568 -16.30182 -15.99351 -15.90207 -15.69988 -15.13098 -15.02358 -14.88471 -14.63147 -14.31530 -14.24528 -13.84707 -13.64843 -13.35207 -13.13289 -12.81033 -12.49090 -12.37947 -12.13978 -11.89370 -11.84064 -11.76792 -11.36830 -11.29851 -11.10964 -10.87531 -10.73617 -10.62928 -10.28100 -10.00282 -9.64094 -9.58990 -9.15184 -9.06018 -8.61620 -8.42445 -7.18149 -6.01812 -4.02690 0.40601 0.47214 2.80565 3.33598 3.35601 3.39175 3.43419 3.76032 3.90263 4.04604 4.26325 4.37581 4.45718 4.56251 4.67951 4.76715 4.86044 4.95534 5.16405 5.20889 5.26007 5.30223 5.32436 5.35920 5.40374 5.45706 5.51402 5.53483 5.66613 5.71550 5.75580 5.83615 6.07962 6.22845 6.23918 6.33835 6.42181 6.79052 6.80230 7.22244 7.28395 7.34187 7.81447 7.97055 8.11500 8.22114 8.56883 9.05494 9.61496 11.09171 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.001598 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.441471 B =17515.033891 C =17569.641063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.028 3.972 17 N -0.685 5.685 18 C 0.064 3.936 19 C -0.079 4.079 20 C -0.122 4.122 21 C -0.057 4.057 22 C -0.161 4.161 23 C 0.124 3.876 24 F -0.132 7.132 25 C -0.191 4.191 26 C 0.132 3.868 27 F -0.127 7.127 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.008 0.992 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.367 0.633 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.349 0.651 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -27.203 -14.910 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.121 0.879 15 O -0.350 6.350 16 C -0.102 4.102 17 N -0.317 5.317 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.075 4.075 22 C -0.180 4.180 23 C 0.104 3.896 24 F -0.111 7.111 25 C -0.211 4.211 26 C 0.113 3.887 27 F -0.106 7.106 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.214 0.786 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.168 0.832 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.234 -27.245 -14.659 30.963 hybrid contribution 1.481 0.918 -0.056 1.743 sum 0.247 -26.327 -14.715 30.162 Atomic orbital electron populations 1.22249 0.88924 0.99678 1.00344 1.62023 1.06909 1.17336 1.39045 1.19747 0.95233 0.81692 0.96633 1.21177 1.34665 0.96840 1.01681 0.91768 1.25000 0.95361 0.97355 0.97029 1.69960 1.38567 1.11458 1.34055 0.86477 0.78899 0.78337 0.83576 1.20633 1.21375 1.19831 1.22706 1.00372 0.93910 0.93547 1.21980 0.98993 0.90907 0.82722 0.87870 1.86594 1.24898 1.84859 1.38637 1.22694 0.97699 0.89215 1.00580 1.60385 1.63501 1.02124 1.05662 1.21906 0.97086 0.92012 0.95529 1.20529 1.02370 0.93522 0.95245 1.20022 0.93182 1.00829 0.98296 1.20873 0.99921 0.95824 0.90857 1.21247 0.94989 1.00558 1.01208 1.17316 0.93185 0.94170 0.84902 1.91539 1.88757 1.74610 1.56188 1.21049 1.02596 1.04064 0.93363 1.17188 0.89432 0.98263 0.83859 1.91543 1.74579 1.93425 1.51013 0.93348 0.90734 0.97361 0.95439 0.99302 0.92979 0.91370 0.95314 0.78645 0.94907 0.90343 0.83223 0.95229 0.90793 0.90329 0.89042 0.83576 0.83878 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.07 0.55 1.28 16 2 N -0.53 -11.48 4.62 -244.37 -1.13 -12.61 16 3 C 0.19 5.05 4.72 -4.97 -0.02 5.03 16 4 C -0.51 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.02 0.42 4.62 -3.82 -0.02 0.40 16 13 C 0.11 1.61 3.08 -26.73 -0.08 1.52 16 14 H 0.10 1.56 6.55 -51.93 -0.34 1.22 16 15 O -0.55 -8.17 12.72 -35.23 -0.45 -8.62 16 16 C 0.03 0.32 5.36 -3.82 -0.02 0.30 16 17 N -0.68 -6.96 6.50 -113.78 -0.74 -7.70 16 18 C 0.06 0.54 5.67 -3.82 -0.02 0.52 16 19 C -0.08 -0.56 5.38 -27.88 -0.15 -0.71 16 20 C -0.12 -0.85 5.14 -104.55 -0.54 -1.39 16 21 C -0.06 -0.31 9.67 -39.61 -0.38 -0.69 16 22 C -0.16 -0.91 10.02 -39.51 -0.40 -1.31 16 23 C 0.12 0.88 7.30 -39.43 -0.29 0.59 16 24 F -0.13 -1.04 17.27 2.25 0.04 -1.00 16 25 C -0.19 -1.38 10.01 -39.45 -0.39 -1.77 16 26 C 0.13 1.05 7.24 -39.42 -0.29 0.76 16 27 F -0.13 -1.17 16.57 2.25 0.04 -1.13 16 28 H 0.05 0.85 6.47 -51.93 -0.34 0.51 16 29 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.03 0.77 7.93 -51.93 -0.41 0.35 16 32 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.37 4.52 9.04 45.56 0.41 4.93 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.35 3.58 8.29 -39.29 -0.33 3.26 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 43 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 44 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 45 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -31.56 388.46 -9.43 -41.00 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.32 Total: 2.26 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.44 Total: -8.70 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -1.13 Total: -46.49 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.45 Total: -8.62 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.08 Total: -2.13 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.56 -9.43 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578435862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.932 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds