Wall clock time and date at job start Tue Mar 31 2020 15:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47408 * 2 1 4 4 N 1.46900 * 109.47082 * 120.00220 * 2 1 3 5 5 C 1.46903 * 111.00131 * 275.00245 * 4 2 1 6 6 C 1.52998 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47135 * 59.99463 * 6 5 4 8 8 O 1.42897 * 109.46674 * 299.99470 * 6 5 4 9 9 C 1.53004 * 109.46799 * 179.97438 * 6 5 4 10 10 N 1.46898 * 109.46619 * 184.99872 * 9 6 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 6 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 9 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47238 * 59.99702 * 17 15 13 19 19 H 1.48503 * 109.47230 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47102 * 299.99648 * 17 15 13 21 21 C 1.50698 * 109.47276 * 239.99828 * 2 1 3 22 22 C 1.38425 * 120.02483 * 284.72966 * 21 2 1 23 23 F 1.35095 * 120.01394 * 359.97438 * 22 21 2 24 24 C 1.38481 * 119.97064 * 179.74617 * 22 21 2 25 25 C 1.38207 * 120.02317 * 0.52731 * 24 22 21 26 26 C 1.38202 * 120.05276 * 359.74368 * 25 24 22 27 27 C 1.38422 * 120.02654 * 105.00296 * 21 2 1 28 28 F 1.35104 * 120.00887 * 359.97438 * 27 21 2 29 29 H 1.09004 * 109.47611 * 300.00075 * 1 2 3 30 30 H 1.09001 * 109.47263 * 59.99554 * 1 2 3 31 31 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 32 32 H 1.00901 * 111.00381 * 38.95305 * 4 2 1 33 33 H 1.08996 * 109.47237 * 59.99345 * 5 4 2 34 34 H 1.09009 * 109.46499 * 299.99967 * 5 4 2 35 35 H 0.96701 * 114.00549 * 300.00026 * 8 6 5 36 36 H 1.08994 * 109.47270 * 64.99737 * 9 6 5 37 37 H 1.08999 * 109.47017 * 304.99614 * 9 6 5 38 38 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 39 39 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 40 40 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 41 41 H 1.08997 * 109.46995 * 289.99871 * 12 10 9 42 42 H 1.09001 * 109.46848 * 49.99877 * 12 10 9 43 43 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 44 44 H 1.07996 * 119.98385 * 180.27563 * 24 22 21 45 45 H 1.08006 * 119.96785 * 179.77080 * 25 24 22 46 46 H 1.08000 * 119.98503 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0823 0.2225 2.3470 6 6 2.5961 -0.5330 3.5742 7 1 3.5915 -0.9264 3.3683 8 8 1.7097 -1.6130 3.8741 9 6 2.6620 0.4203 4.7692 10 7 3.2668 -0.2721 5.9149 11 6 4.6744 -0.5982 5.6499 12 6 3.1330 0.5246 7.1419 13 6 3.5374 -0.3102 8.3296 14 1 3.8618 -1.3305 8.1871 15 6 3.4932 0.2284 9.5980 16 7 3.0987 1.4709 9.7713 17 14 3.9952 -0.8062 11.0701 18 1 5.4071 -1.2386 10.9129 19 1 3.8598 -0.0009 12.3104 20 1 3.1182 -2.0014 11.1572 21 6 2.0323 -0.7104 -1.2304 22 6 1.9759 -2.0916 -1.3043 23 9 1.4709 -2.8034 -0.2732 24 6 2.4330 -2.7429 -2.4377 25 6 2.9553 -2.0152 -3.4902 26 6 3.0173 -0.6367 -3.4151 27 6 2.5557 0.0172 -2.2852 28 9 2.6159 1.3650 -2.2123 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.4495 -1.4980 1.4100 33 1 1.0870 0.6162 2.5525 34 1 2.7588 1.0461 2.1182 35 1 0.8037 -1.3361 4.0681 36 1 1.6550 0.7448 5.0310 37 1 3.2673 1.2884 4.5084 38 1 5.0780 -1.1714 6.4846 39 1 5.2449 0.3232 5.5323 40 1 4.7449 -1.1883 4.7361 41 1 3.7773 1.4014 7.0778 42 1 2.0968 0.8428 7.2573 43 1 3.0672 1.8498 10.6637 44 1 2.3850 -3.8202 -2.4974 45 1 3.3150 -2.5244 -4.3722 46 1 3.4253 -0.0691 -4.2384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583625832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:28 Heat of formation + Delta-G solvation = -108.926211 kcal Electronic energy + Delta-G solvation = -27997.857376 eV Core-core repulsion = 23751.477252 eV Total energy + Delta-G solvation = -4246.380123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.33906 -49.22874 -39.44128 -38.36169 -36.64203 -35.32085 -32.53345 -32.19224 -30.64197 -29.90923 -28.69630 -27.02696 -25.81138 -24.35921 -23.46871 -22.96598 -21.39518 -21.15544 -20.13137 -18.46139 -17.63587 -16.81612 -16.46786 -16.27253 -15.98481 -15.87809 -15.80563 -15.53177 -15.05518 -14.79112 -14.74405 -14.63144 -14.33917 -14.09168 -13.56127 -13.35797 -13.15017 -13.01797 -12.74652 -12.52854 -12.38498 -12.25122 -12.00006 -11.84867 -11.77765 -11.29721 -11.17636 -11.08051 -10.87004 -10.75265 -10.64511 -10.25809 -10.00042 -9.61537 -9.26393 -9.10585 -9.08132 -8.57426 -8.40888 -7.16634 -6.00363 -4.01206 0.60527 0.63631 2.97855 3.36153 3.39388 3.43233 3.55710 3.78770 4.06768 4.17198 4.39678 4.42554 4.46526 4.70168 4.74261 4.81348 4.89806 4.98913 5.12027 5.23379 5.32703 5.37737 5.39112 5.44734 5.48201 5.57869 5.62285 5.65440 5.71507 5.76696 5.77247 5.81650 6.08189 6.22513 6.36234 6.39639 6.45377 6.80068 6.81194 7.27359 7.29650 7.35358 7.82680 7.98268 8.12654 8.23405 8.58307 9.06558 9.62798 11.10625 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.002147 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.037473 B =13038.629751 C =13326.147791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 H 0.094 0.906 4 N -0.678 5.678 5 C 0.028 3.972 6 C 0.114 3.886 7 H 0.104 0.896 8 O -0.545 6.545 9 C 0.026 3.974 10 N -0.530 5.530 11 C 0.037 3.963 12 C 0.193 3.807 13 C -0.505 4.505 14 H 0.063 0.937 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.138 4.138 22 C 0.150 3.850 23 F -0.122 7.122 24 C -0.167 4.167 25 C -0.066 4.066 26 C -0.166 4.166 27 C 0.131 3.869 28 F -0.131 7.131 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.356 0.644 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.366 0.634 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.009 0.991 40 H 0.047 0.953 41 H -0.011 1.011 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 -3.922 -29.738 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.011 3.989 3 H 0.112 0.888 4 N -0.312 5.312 5 C -0.102 4.102 6 C 0.054 3.946 7 H 0.122 0.878 8 O -0.348 6.348 9 C -0.104 4.104 10 N -0.254 5.254 11 C -0.112 4.112 12 C 0.068 3.932 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.727 3.273 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.140 4.140 22 C 0.130 3.870 23 F -0.100 7.100 24 C -0.186 4.186 25 C -0.085 4.085 26 C -0.185 4.185 27 C 0.111 3.889 28 F -0.109 7.109 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.178 0.822 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.212 0.788 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.007 0.993 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.978 -4.475 -29.697 30.179 hybrid contribution -0.755 1.055 1.228 1.786 sum -3.733 -3.421 -28.469 28.915 Atomic orbital electron populations 1.22477 0.95622 1.02858 1.02830 1.20311 0.93207 0.97708 0.87641 0.88799 1.60486 1.57969 1.09969 1.02808 1.22727 1.00156 0.95893 0.91409 1.21998 0.94672 0.87610 0.90290 0.87811 1.86621 1.22901 1.33500 1.91810 1.22699 1.00286 0.94832 0.92608 1.62031 1.15246 1.45547 1.02582 1.22254 0.89301 0.98848 1.00787 1.19739 0.96629 0.91362 0.85459 1.21135 1.43658 0.98969 0.90590 0.91852 1.25000 0.95600 0.95079 0.99068 1.69953 1.48031 1.13574 1.22521 0.86539 0.79093 0.80124 0.81527 1.20281 1.21410 1.20125 1.19873 1.04234 0.92851 0.97052 1.17131 0.96674 0.88084 0.85125 1.91499 1.84252 1.77661 1.56569 1.21245 1.02594 1.01555 0.93172 1.20823 0.96632 0.92747 0.98256 1.21165 1.03920 0.95487 0.97960 1.17178 0.99848 0.77125 0.94732 1.91517 1.94132 1.28806 1.96449 0.91561 0.91820 0.91857 0.82170 0.94726 0.90308 0.78844 0.91302 0.95332 0.90827 0.97229 0.93398 0.99316 0.95438 0.92928 0.84029 0.84029 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.10 37.15 0.34 -1.23 16 2 C 0.12 1.24 2.60 -68.87 -0.18 1.06 16 3 H 0.09 0.98 6.93 -51.93 -0.36 0.62 16 4 N -0.68 -7.91 5.67 -107.96 -0.61 -8.52 16 5 C 0.03 0.33 5.19 -3.82 -0.02 0.31 16 6 C 0.11 1.69 3.20 -26.73 -0.09 1.61 16 7 H 0.10 1.68 6.26 -51.93 -0.33 1.36 16 8 O -0.54 -8.48 12.62 -35.23 -0.44 -8.92 16 9 C 0.03 0.45 4.60 -3.82 -0.02 0.43 16 10 N -0.53 -11.74 4.70 -244.37 -1.15 -12.89 16 11 C 0.04 0.75 9.17 60.07 0.55 1.30 16 12 C 0.19 5.14 4.72 -4.97 -0.02 5.12 16 13 C -0.50 -14.52 8.52 -34.44 -0.29 -14.81 16 14 H 0.06 1.81 7.10 -52.48 -0.37 1.44 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.14 -1.37 4.96 -104.49 -0.52 -1.89 16 22 C 0.15 1.45 7.00 -39.42 -0.28 1.17 16 23 F -0.12 -1.33 14.34 2.25 0.03 -1.30 16 24 C -0.17 -1.21 10.03 -39.50 -0.40 -1.61 16 25 C -0.07 -0.39 10.04 -39.61 -0.40 -0.79 16 26 C -0.17 -1.14 10.02 -39.51 -0.40 -1.54 16 27 C 0.13 1.20 7.25 -39.43 -0.29 0.92 16 28 F -0.13 -1.30 16.27 2.25 0.04 -1.27 16 29 H 0.07 0.56 7.45 -51.93 -0.39 0.18 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 32 H 0.36 4.30 6.09 -39.29 -0.24 4.06 16 33 H 0.03 0.38 7.44 -51.93 -0.39 -0.01 16 34 H 0.08 0.93 8.06 -51.92 -0.42 0.51 16 35 H 0.37 4.59 9.05 45.56 0.41 5.00 16 36 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 37 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.05 0.86 6.21 -51.93 -0.32 0.54 16 41 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 42 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16 46 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -32.17 379.56 -8.87 -41.04 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.07 Total: 4.00 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.10 Total: -8.49 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -1.02 Total: -47.81 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.44 Total: -8.92 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.07 Total: -2.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.17 -8.87 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583625832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.890 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds