Wall clock time and date at job start Tue Mar 31 2020 15:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47149 * 2 1 4 4 N 1.46903 * 109.47319 * 240.00309 * 2 1 3 5 5 C 1.46903 * 111.00177 * 84.99846 * 4 2 1 6 6 C 1.52992 * 109.47578 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46862 * 305.00661 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99788 * 6 5 4 9 9 C 1.52997 * 109.47482 * 185.00096 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00255 * 293.95367 * 10 9 6 12 12 C 1.46901 * 111.00103 * 169.99667 * 10 9 6 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99818 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46963 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47084 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47321 * 330.00380 * 17 15 13 21 21 C 1.50696 * 109.47450 * 120.00279 * 2 1 3 22 22 C 1.38427 * 120.02343 * 74.72204 * 21 2 1 23 23 F 1.35100 * 120.01210 * 359.97438 * 22 21 2 24 24 C 1.38477 * 119.97209 * 179.70015 * 22 21 2 25 25 C 1.38202 * 120.02420 * 0.60229 * 24 22 21 26 26 C 1.38213 * 120.05314 * 359.67641 * 25 24 22 27 27 C 1.38414 * 120.03018 * 255.00136 * 21 2 1 28 28 F 1.35111 * 120.00912 * 359.97438 * 27 21 2 29 29 H 1.09006 * 109.46758 * 59.99603 * 1 2 3 30 30 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46707 * 299.99842 * 1 2 3 32 32 H 1.00906 * 110.99771 * 321.04795 * 4 2 1 33 33 H 1.09001 * 109.46871 * 59.99686 * 5 4 2 34 34 H 1.09004 * 109.46883 * 300.00718 * 5 4 2 35 35 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 36 36 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 37 37 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 38 38 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 39 39 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 41 41 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 42 42 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 43 43 H 0.97008 * 119.99731 * 179.97438 * 16 15 13 44 44 H 1.07997 * 119.98423 * 180.27583 * 24 22 21 45 45 H 1.08003 * 119.97810 * 179.69685 * 25 24 22 46 46 H 1.08003 * 119.98701 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5329 -3.5745 7 1 3.5507 -1.0018 -3.3397 8 8 1.6493 -1.5384 -3.9442 9 6 2.7790 0.4459 -4.7359 10 7 3.2718 -0.2795 -5.9144 11 6 4.6241 -0.8043 -5.6823 12 6 3.2360 0.5729 -7.1103 13 6 3.5103 -0.2648 -8.3327 14 1 3.6926 -1.3245 -8.2313 15 6 3.5286 0.3217 -9.5804 16 7 3.7675 -0.4095 -10.6471 17 14 3.2126 2.1543 -9.7557 18 1 4.4997 2.8894 -9.6648 19 1 2.5804 2.4239 -11.0721 20 1 2.3066 2.6066 -8.6695 21 6 2.0324 -0.7104 1.2304 22 6 1.9656 -2.0909 1.3089 23 9 1.4494 -2.8019 0.2827 24 6 2.4333 -2.7430 2.4374 25 6 2.9551 -2.0154 3.4902 26 6 3.0171 -0.6367 3.4153 27 6 2.5557 0.0171 2.2852 28 9 2.6169 1.3649 2.2120 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4496 -1.4979 -1.4101 33 1 2.7589 1.0463 -2.1182 34 1 1.0871 0.6165 -2.5525 35 1 0.7743 -1.1924 -4.1670 36 1 3.5004 1.2129 -4.4540 37 1 1.8234 0.9148 -4.9707 38 1 4.6078 -1.4873 -4.8329 39 1 4.9644 -1.3371 -6.5702 40 1 5.3031 0.0218 -5.4712 41 1 2.2521 1.0336 -7.1989 42 1 3.9950 1.3506 -7.0250 43 1 3.7800 0.0030 -11.5250 44 1 2.3853 -3.8203 2.4970 45 1 3.3152 -2.5245 4.3720 46 1 3.4255 -0.0692 4.2384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583625833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:32 Heat of formation + Delta-G solvation = -104.867316 kcal Electronic energy + Delta-G solvation = -28047.289103 eV Core-core repulsion = 23801.084987 eV Total energy + Delta-G solvation = -4246.204116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.36698 -49.25610 -39.47188 -38.42855 -36.73492 -35.41236 -32.49765 -32.23672 -30.66721 -30.00831 -28.88431 -27.54063 -25.85871 -24.36914 -23.44914 -22.92171 -21.43619 -21.06257 -20.08734 -18.48935 -17.67940 -16.94639 -16.76292 -16.31984 -16.05903 -15.92867 -15.87821 -15.56368 -15.17679 -14.79983 -14.75074 -14.53338 -14.40358 -14.16230 -13.77172 -13.30490 -13.16912 -13.05361 -12.75723 -12.63967 -12.42813 -12.32960 -12.22011 -12.02806 -11.82353 -11.58359 -11.23539 -11.20804 -10.96211 -10.71991 -10.67918 -10.25853 -9.90769 -9.59906 -9.29253 -9.19816 -9.11801 -8.63178 -8.56403 -7.32109 -6.03291 -4.00233 0.58022 0.60959 2.95335 3.28046 3.35609 3.37040 3.52748 3.74371 4.04143 4.13823 4.36954 4.40167 4.42686 4.59826 4.71110 4.76912 4.85681 4.91340 5.07697 5.18356 5.21271 5.30545 5.34488 5.41327 5.42245 5.53633 5.57635 5.58807 5.65641 5.69203 5.74999 5.77632 5.96265 6.15372 6.26355 6.33735 6.37245 6.72800 6.75600 6.86137 7.01404 7.22410 7.60808 7.91611 7.93721 8.10758 8.68452 9.06729 9.58299 11.09934 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.002247 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.197443 B =12456.813707 C =12821.601014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 H 0.094 0.906 4 N -0.679 5.679 5 C 0.029 3.971 6 C 0.115 3.885 7 H 0.105 0.895 8 O -0.543 6.543 9 C 0.022 3.978 10 N -0.519 5.519 11 C 0.035 3.965 12 C 0.162 3.838 13 C -0.507 4.507 14 H 0.082 0.918 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.876 3.124 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.138 4.138 22 C 0.149 3.851 23 F -0.122 7.122 24 C -0.166 4.166 25 C -0.066 4.066 26 C -0.166 4.166 27 C 0.131 3.869 28 F -0.131 7.131 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.356 0.644 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.367 0.633 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.009 0.991 41 H 0.026 0.974 42 H -0.018 1.018 43 H 0.263 0.737 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 0.115 31.992 32.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 H 0.112 0.888 4 N -0.313 5.313 5 C -0.101 4.101 6 C 0.055 3.945 7 H 0.122 0.878 8 O -0.347 6.347 9 C -0.108 4.108 10 N -0.243 5.243 11 C -0.113 4.113 12 C 0.035 3.965 13 C -0.545 4.545 14 H 0.100 0.900 15 C -0.135 4.135 16 N -0.539 5.539 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.140 4.140 22 C 0.129 3.871 23 F -0.100 7.100 24 C -0.185 4.185 25 C -0.084 4.084 26 C -0.185 4.185 27 C 0.111 3.889 28 F -0.109 7.109 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.178 0.822 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.213 0.787 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.027 0.973 41 H 0.044 0.956 42 H -0.001 1.001 43 H 0.073 0.927 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.274 -0.567 31.896 32.186 hybrid contribution -0.994 2.436 -0.588 2.696 sum -5.269 1.869 31.308 31.803 Atomic orbital electron populations 1.22480 0.95598 1.02914 1.02808 1.20310 0.93221 0.97684 0.87624 0.88813 1.60505 1.57958 1.09988 1.02809 1.22728 1.00105 0.95881 0.91417 1.21953 0.93583 0.89067 0.89946 0.87760 1.86629 1.23798 1.34561 1.89695 1.22757 1.00367 0.95036 0.92608 1.61853 1.23399 1.37104 1.01908 1.22294 0.88779 0.98351 1.01911 1.20206 0.95458 0.91924 0.88868 1.21044 1.47588 0.97114 0.88752 0.90025 1.24911 0.95011 0.97697 0.95841 1.69898 1.50043 1.35658 0.98348 0.86855 0.78781 0.86417 0.77597 1.20405 1.21147 1.19334 1.19857 1.04272 0.92867 0.97018 1.17135 0.96541 0.88099 0.85289 1.91502 1.83832 1.77717 1.56956 1.21247 1.02433 1.01571 0.93242 1.20829 0.96643 0.92742 0.98226 1.21172 1.03870 0.95493 0.97965 1.17176 0.99910 0.77114 0.94715 1.91518 1.94143 1.28818 1.96450 0.91597 0.91804 0.91801 0.82154 0.90320 0.94701 0.78713 0.95203 0.91322 0.93015 0.90129 0.97280 0.95613 1.00066 0.92694 0.83996 0.84004 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.09 37.16 0.34 -1.17 16 2 C 0.12 1.19 2.59 -68.86 -0.18 1.02 16 3 H 0.09 0.94 6.93 -51.93 -0.36 0.58 16 4 N -0.68 -7.64 5.69 -107.95 -0.61 -8.25 16 5 C 0.03 0.32 5.16 -3.83 -0.02 0.30 16 6 C 0.11 1.62 3.08 -26.74 -0.08 1.54 16 7 H 0.10 1.62 6.55 -51.93 -0.34 1.28 16 8 O -0.54 -8.26 12.72 -35.23 -0.45 -8.71 16 9 C 0.02 0.37 4.62 -3.83 -0.02 0.35 16 10 N -0.52 -11.07 4.62 -244.37 -1.13 -12.20 16 11 C 0.03 0.70 9.14 60.07 0.55 1.25 16 12 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 13 C -0.51 -14.66 9.01 -34.44 -0.31 -14.97 16 14 H 0.08 2.58 7.37 -52.48 -0.39 2.20 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 17 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 C -0.14 -1.33 4.96 -104.49 -0.52 -1.85 16 22 C 0.15 1.40 6.98 -39.42 -0.28 1.13 16 23 F -0.12 -1.30 14.30 2.25 0.03 -1.27 16 24 C -0.17 -1.18 10.02 -39.51 -0.40 -1.57 16 25 C -0.07 -0.37 10.04 -39.60 -0.40 -0.77 16 26 C -0.17 -1.11 10.03 -39.51 -0.40 -1.50 16 27 C 0.13 1.16 7.24 -39.43 -0.29 0.88 16 28 F -0.13 -1.27 16.27 2.25 0.04 -1.23 16 29 H 0.07 0.54 7.45 -51.93 -0.39 0.15 16 30 H 0.06 0.55 7.59 -51.93 -0.39 0.16 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.36 4.19 6.27 -39.29 -0.25 3.95 16 33 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 34 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 35 H 0.37 4.50 9.05 45.56 0.41 4.91 16 36 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 38 H 0.05 0.92 6.47 -51.93 -0.34 0.59 16 39 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.03 0.64 6.99 -51.93 -0.36 0.28 16 42 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 46 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -32.64 376.29 -8.52 -41.16 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.06 Total: 4.44 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.11 Total: -9.53 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.97 Total: -47.59 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.45 Total: -8.71 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.07 Total: -2.50 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.64 -8.52 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583625833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.707 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds