Wall clock time and date at job start Tue Mar 31 2020 15:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47104 * 2 1 4 4 N 1.46900 * 109.47024 * 239.99747 * 2 1 3 5 5 C 1.46903 * 111.00131 * 85.00563 * 4 2 1 6 6 C 1.52998 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47135 * 59.99463 * 6 5 4 8 8 O 1.42897 * 109.46674 * 299.99470 * 6 5 4 9 9 C 1.53004 * 109.46799 * 179.97438 * 6 5 4 10 10 N 1.46898 * 109.46619 * 184.99872 * 9 6 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 6 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 9 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47279 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47075 * 119.99817 * 17 15 13 20 20 H 1.48496 * 109.46942 * 240.00005 * 17 15 13 21 21 C 1.50700 * 109.47094 * 120.00245 * 2 1 3 22 22 C 1.38422 * 120.02883 * 74.72337 * 21 2 1 23 23 F 1.35100 * 120.00904 * 359.97438 * 22 21 2 24 24 C 1.38470 * 119.97532 * 179.70350 * 22 21 2 25 25 C 1.38212 * 120.02453 * 0.59515 * 24 22 21 26 26 C 1.38208 * 120.05040 * 359.67786 * 25 24 22 27 27 C 1.38427 * 120.02370 * 255.00114 * 21 2 1 28 28 F 1.35097 * 120.00816 * 359.97438 * 27 21 2 29 29 H 1.08999 * 109.47055 * 60.00404 * 1 2 3 30 30 H 1.09004 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47180 * 300.00050 * 1 2 3 32 32 H 1.00904 * 111.00509 * 321.04403 * 4 2 1 33 33 H 1.08996 * 109.47237 * 59.99345 * 5 4 2 34 34 H 1.09009 * 109.46499 * 299.99967 * 5 4 2 35 35 H 0.96701 * 114.00549 * 300.00026 * 8 6 5 36 36 H 1.08994 * 109.47270 * 64.99737 * 9 6 5 37 37 H 1.08999 * 109.47017 * 304.99614 * 9 6 5 38 38 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 39 39 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 40 40 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 41 41 H 1.08997 * 109.46995 * 289.99871 * 12 10 9 42 42 H 1.09001 * 109.46848 * 49.99877 * 12 10 9 43 43 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 44 44 H 1.07998 * 119.99245 * 180.27966 * 24 22 21 45 45 H 1.07998 * 119.97635 * 179.70525 * 25 24 22 46 46 H 1.07997 * 119.99208 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5951 -0.5333 -3.5745 7 1 1.9184 -1.3566 -3.8029 8 8 3.8999 -1.0499 -3.3052 9 6 2.6600 0.4197 -4.7697 10 7 3.0369 -0.3312 -5.9747 11 6 1.9875 -1.2891 -6.3479 12 6 3.3401 0.5778 -7.0881 13 6 3.9541 -0.2031 -8.2213 14 1 4.1037 -1.2683 -8.1243 15 6 4.3249 0.4422 -9.3820 16 7 4.1422 1.7392 -9.5003 17 14 5.0853 -0.5260 -10.7869 18 1 5.1817 -1.9581 -10.4060 19 1 4.2359 -0.3913 -11.9975 20 1 6.4433 0.0019 -11.0737 21 6 2.0323 -0.7105 1.2304 22 6 1.9655 -2.0908 1.3091 23 9 1.4494 -2.8019 0.2828 24 6 2.4330 -2.7429 2.4376 25 6 2.9549 -2.0152 3.4904 26 6 3.0170 -0.6366 3.4154 27 6 2.5556 0.0173 2.2853 28 9 2.6167 1.3649 2.2120 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4496 -1.4980 -1.4100 33 1 2.7589 1.0461 -2.1182 34 1 1.0871 0.6163 -2.5525 35 1 4.5557 -0.3714 -3.0935 36 1 3.4024 1.1941 -4.5771 37 1 1.6840 0.8813 -4.9197 38 1 2.3217 -1.8801 -7.2007 39 1 1.0797 -0.7478 -6.6144 40 1 1.7826 -1.9500 -5.5057 41 1 2.4206 1.0525 -7.4303 42 1 4.0406 1.3425 -6.7524 43 1 4.4034 2.1933 -10.3166 44 1 2.3852 -3.8202 2.4974 45 1 3.3150 -2.5243 4.3722 46 1 3.4246 -0.0689 4.2387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583625834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:35 Heat of formation + Delta-G solvation = -107.273037 kcal Electronic energy + Delta-G solvation = -27994.112999 eV Core-core repulsion = 23747.804562 eV Total energy + Delta-G solvation = -4246.308436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.32847 -49.23606 -39.42702 -38.28595 -36.65910 -35.26106 -32.52364 -32.20685 -30.63210 -29.85956 -28.68281 -27.03741 -25.81965 -24.33535 -23.48740 -22.96760 -21.48697 -21.10951 -20.11371 -18.45744 -17.62249 -16.78030 -16.45429 -16.26786 -16.02270 -15.87194 -15.59818 -15.52968 -15.06503 -14.89635 -14.72745 -14.53157 -14.36325 -14.14516 -13.47362 -13.40297 -13.13124 -12.98577 -12.75632 -12.60270 -12.40278 -12.28133 -11.94436 -11.83030 -11.76209 -11.30505 -11.16772 -11.07699 -10.88553 -10.73572 -10.63311 -10.25104 -9.95133 -9.55352 -9.24737 -9.08918 -9.05557 -8.54452 -8.41809 -7.16910 -6.00756 -4.01411 0.61844 0.64802 2.98935 3.33057 3.40247 3.46169 3.56530 3.78386 4.07586 4.17073 4.39971 4.43373 4.46141 4.71982 4.77961 4.85179 4.88779 4.91503 5.17951 5.20572 5.31802 5.35705 5.41615 5.44633 5.53790 5.58069 5.61106 5.64157 5.72046 5.73096 5.78403 5.80375 6.06856 6.20353 6.32664 6.40502 6.44184 6.78034 6.79183 7.21163 7.29326 7.34589 7.83218 8.07722 8.17765 8.24045 8.58021 9.06995 9.62761 11.10339 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.002155 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.285575 B =12987.340623 C =13226.448766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 H 0.095 0.905 4 N -0.672 5.672 5 C 0.027 3.973 6 C 0.117 3.883 7 H 0.092 0.908 8 O -0.535 6.535 9 C 0.025 3.975 10 N -0.529 5.529 11 C 0.037 3.963 12 C 0.192 3.808 13 C -0.503 4.503 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.136 4.136 22 C 0.150 3.850 23 F -0.124 7.124 24 C -0.166 4.166 25 C -0.067 4.067 26 C -0.166 4.166 27 C 0.131 3.869 28 F -0.131 7.131 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.348 0.652 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.368 0.632 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.046 0.954 41 H -0.011 1.011 42 H 0.028 0.972 43 H 0.260 0.740 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -4.764 28.900 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.011 3.989 3 H 0.113 0.887 4 N -0.304 5.304 5 C -0.103 4.103 6 C 0.057 3.943 7 H 0.110 0.890 8 O -0.338 6.338 9 C -0.105 4.105 10 N -0.253 5.253 11 C -0.112 4.112 12 C 0.067 3.933 13 C -0.542 4.542 14 H 0.083 0.917 15 C -0.148 4.148 16 N -0.541 5.541 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.138 4.138 22 C 0.130 3.870 23 F -0.102 7.102 24 C -0.185 4.185 25 C -0.085 4.085 26 C -0.185 4.185 27 C 0.111 3.889 28 F -0.109 7.109 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.169 0.831 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.214 0.786 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.027 0.973 40 H 0.064 0.936 41 H 0.007 0.993 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.389 -5.350 28.841 30.021 hybrid contribution -1.133 0.977 -1.332 2.003 sum -7.522 -4.374 27.509 28.852 Atomic orbital electron populations 1.22492 0.95732 1.02810 1.02849 1.20317 0.93080 0.97763 0.87701 0.88738 1.60467 1.57508 1.09537 1.02871 1.22776 1.00211 0.95939 0.91391 1.21873 0.85983 0.96109 0.90379 0.88976 1.86593 1.18593 1.36785 1.91873 1.22716 0.99112 0.95961 0.92669 1.62023 1.39770 1.18623 1.04933 1.22250 0.92372 0.96210 1.00334 1.19753 0.95129 0.91153 0.87222 1.21213 1.39539 0.95164 0.98282 0.91740 1.25004 0.96147 0.94949 0.98698 1.69973 1.48476 1.08205 1.27411 0.86430 0.78831 0.80277 0.81838 1.19607 1.21172 1.21009 1.19851 1.04187 0.92842 0.96970 1.17108 0.96568 0.88087 0.85205 1.91483 1.83875 1.77760 1.57066 1.21234 1.02480 1.01521 0.93272 1.20821 0.96675 0.92748 0.98225 1.21168 1.03859 0.95485 0.97976 1.17175 0.99884 0.77124 0.94710 1.91515 1.94134 1.28813 1.96445 0.91590 0.91912 0.91780 0.83072 0.90572 0.94414 0.78594 0.91103 0.95577 0.90775 0.97301 0.93554 0.99342 0.95356 0.93040 0.84058 0.84036 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.09 37.16 0.34 -1.22 16 2 C 0.12 1.23 2.59 -68.86 -0.18 1.05 16 3 H 0.09 0.98 6.93 -51.93 -0.36 0.62 16 4 N -0.67 -7.74 5.55 -107.95 -0.60 -8.34 16 5 C 0.03 0.32 5.15 -3.82 -0.02 0.30 16 6 C 0.12 1.73 3.13 -26.73 -0.08 1.65 16 7 H 0.09 1.42 6.26 -51.93 -0.33 1.09 16 8 O -0.54 -8.83 13.15 -35.23 -0.46 -9.29 16 9 C 0.03 0.45 4.60 -3.82 -0.02 0.43 16 10 N -0.53 -11.71 4.70 -244.37 -1.15 -12.86 16 11 C 0.04 0.75 9.17 60.07 0.55 1.30 16 12 C 0.19 5.12 4.72 -4.97 -0.02 5.10 16 13 C -0.50 -14.47 8.52 -34.44 -0.29 -14.76 16 14 H 0.06 1.86 7.10 -52.48 -0.37 1.48 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.14 -1.35 4.96 -104.48 -0.52 -1.87 16 22 C 0.15 1.45 6.98 -39.43 -0.28 1.17 16 23 F -0.12 -1.32 14.30 2.25 0.03 -1.29 16 24 C -0.17 -1.22 10.03 -39.51 -0.40 -1.62 16 25 C -0.07 -0.39 10.04 -39.60 -0.40 -0.79 16 26 C -0.17 -1.15 10.02 -39.51 -0.40 -1.55 16 27 C 0.13 1.21 7.25 -39.43 -0.29 0.92 16 28 F -0.13 -1.31 16.27 2.25 0.04 -1.27 16 29 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 30 H 0.06 0.54 7.59 -51.93 -0.39 0.15 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.35 4.08 6.71 -39.29 -0.26 3.81 16 33 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 34 H 0.04 0.42 7.44 -51.92 -0.39 0.03 16 35 H 0.37 5.14 9.05 45.56 0.41 5.56 16 36 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 37 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 38 H 0.07 1.60 6.86 -51.93 -0.36 1.25 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.05 0.81 6.21 -51.93 -0.32 0.49 16 41 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 42 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 46 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -32.36 380.33 -8.88 -41.24 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.09 Total: 3.93 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.09 Total: -8.47 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -1.01 Total: -47.61 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.46 Total: -9.29 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.07 Total: -2.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.36 -8.88 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583625834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.030 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds