Wall clock time and date at job start Tue Mar 31 2020 15:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47157 * 2 1 4 4 N 1.46903 * 109.46643 * 119.99683 * 2 1 3 5 5 C 1.46903 * 111.00177 * 274.99960 * 4 2 1 6 6 C 1.52992 * 109.47578 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46862 * 305.00661 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99788 * 6 5 4 9 9 C 1.52997 * 109.47482 * 185.00096 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00255 * 293.95367 * 10 9 6 12 12 C 1.46901 * 111.00103 * 169.99667 * 10 9 6 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99790 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00051 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47047 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47167 * 119.99895 * 17 15 13 20 20 H 1.48495 * 109.47058 * 239.99959 * 17 15 13 21 21 C 1.50694 * 109.47317 * 239.99506 * 2 1 3 22 22 C 1.38226 * 119.98767 * 264.72457 * 21 2 1 23 23 C 1.38193 * 120.05119 * 179.76694 * 22 21 2 24 24 C 1.38494 * 120.02182 * 0.51041 * 23 22 21 25 25 F 1.35107 * 120.01317 * 179.76598 * 24 23 22 26 26 C 1.38396 * 119.97382 * 359.74514 * 24 23 22 27 27 C 1.38437 * 119.95217 * 359.97438 * 26 24 23 28 28 F 1.35104 * 120.01241 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47607 * 300.00613 * 1 2 3 30 30 H 1.09003 * 109.46749 * 60.00768 * 1 2 3 31 31 H 1.09006 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.00906 * 110.99771 * 151.04910 * 4 2 1 33 33 H 1.09001 * 109.46871 * 59.99686 * 5 4 2 34 34 H 1.09004 * 109.46883 * 300.00718 * 5 4 2 35 35 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 36 36 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 37 37 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 38 38 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 39 39 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 41 41 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 42 42 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 43 43 H 0.96994 * 119.99598 * 179.97438 * 16 15 13 44 44 H 1.07999 * 119.97863 * 0.02562 * 22 21 2 45 45 H 1.07994 * 119.99001 * 180.25393 * 23 22 21 46 46 H 1.08008 * 120.02333 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3470 6 6 2.5960 -0.5326 3.5743 7 1 1.9707 -1.4080 3.7501 8 8 3.9444 -0.9482 3.3480 9 6 2.5436 0.3855 4.7971 10 7 3.0362 -0.3400 5.9756 11 6 2.1343 -1.4444 6.3290 12 6 3.2250 0.5701 7.1132 13 6 3.9556 -0.1502 8.2170 14 1 4.2505 -1.1809 8.0864 15 6 4.2474 0.5066 9.3936 16 7 3.8887 1.7619 9.5524 17 14 5.1536 -0.3861 10.7616 18 1 5.4431 -1.7792 10.3366 19 1 6.4282 0.3182 11.0528 20 1 4.3094 -0.4070 11.9831 21 6 2.0324 -0.7105 -1.2303 22 6 2.3665 -2.0502 -1.1665 23 6 2.8227 -2.7043 -2.2951 24 6 2.9557 -2.0152 -3.4891 25 9 3.4063 -2.6537 -4.5912 26 6 2.6265 -0.6725 -3.5529 27 6 2.1640 -0.0198 -2.4230 28 9 1.8418 1.2909 -2.4840 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.9173 -1.1205 1.0289 33 1 1.0869 0.6165 2.5525 34 1 2.7587 1.0463 2.1182 35 1 4.5583 -0.2194 3.1840 36 1 1.5151 0.7025 4.9697 37 1 3.1690 1.2608 4.6212 38 1 2.0673 -2.1404 5.4928 39 1 2.5229 -1.9648 7.2044 40 1 1.1439 -1.0475 6.5516 41 1 3.8086 1.4339 6.7945 42 1 2.2530 0.9028 7.4775 43 1 4.0937 2.2238 10.3803 44 1 2.2669 -2.5874 -0.2348 45 1 3.0795 -3.7520 -2.2450 46 1 2.7296 -0.1344 -4.4837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584585391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:43 Heat of formation + Delta-G solvation = -110.914392 kcal Electronic energy + Delta-G solvation = -27456.476533 eV Core-core repulsion = 23210.010195 eV Total energy + Delta-G solvation = -4246.466337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.42748 -49.40257 -39.79730 -38.31271 -36.49465 -35.31477 -32.54564 -32.05861 -31.30067 -29.57601 -28.91625 -27.07865 -25.90000 -24.20278 -23.83309 -22.91121 -21.31234 -20.96033 -20.12012 -18.66657 -17.65106 -17.10568 -16.49371 -16.43780 -16.15729 -16.04631 -15.72925 -15.52483 -15.22208 -14.92039 -14.79782 -14.59955 -14.29237 -14.16096 -13.64310 -13.42170 -13.35383 -13.00183 -12.69374 -12.61851 -12.41218 -12.10244 -11.98313 -11.90555 -11.71929 -11.34196 -11.24889 -11.10792 -10.88190 -10.74375 -10.66047 -10.29964 -10.02101 -9.64522 -9.51965 -9.13538 -9.04887 -8.71987 -8.44281 -7.20018 -6.03104 -4.03911 0.47329 0.56187 2.89746 3.31198 3.38535 3.41165 3.44125 3.67518 3.95758 4.12768 4.21580 4.41255 4.43842 4.62204 4.70535 4.82439 4.94041 5.06989 5.14742 5.27196 5.28843 5.33854 5.37287 5.41818 5.45778 5.55486 5.58304 5.64193 5.65939 5.73218 5.80166 5.97146 6.05952 6.20660 6.30529 6.31666 6.39676 6.73715 6.78341 7.12929 7.26762 7.32630 7.80242 7.93466 8.09706 8.20291 8.55285 9.04577 9.60378 11.07924 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.001961 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.684706 B =14275.031640 C =14758.106844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.125 3.875 3 H 0.058 0.942 4 N -0.678 5.678 5 C 0.027 3.973 6 C 0.114 3.886 7 H 0.104 0.896 8 O -0.546 6.546 9 C 0.025 3.975 10 N -0.529 5.529 11 C 0.037 3.963 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.131 4.131 22 C -0.048 4.048 23 C -0.160 4.160 24 C 0.126 3.874 25 F -0.133 7.133 26 C -0.193 4.193 27 C 0.134 3.866 28 F -0.129 7.129 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.350 0.650 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.368 0.632 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.008 0.992 41 H 0.027 0.973 42 H -0.011 1.011 43 H 0.260 0.740 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -4.773 -26.905 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.015 3.985 3 H 0.076 0.924 4 N -0.311 5.311 5 C -0.103 4.103 6 C 0.054 3.946 7 H 0.122 0.878 8 O -0.350 6.350 9 C -0.105 4.105 10 N -0.253 5.253 11 C -0.112 4.112 12 C 0.067 3.933 13 C -0.543 4.543 14 H 0.083 0.917 15 C -0.148 4.148 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.212 1.212 21 C -0.132 4.132 22 C -0.066 4.066 23 C -0.179 4.179 24 C 0.106 3.894 25 F -0.111 7.111 26 C -0.213 4.213 27 C 0.114 3.886 28 F -0.107 7.107 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.171 0.829 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.214 0.786 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.027 0.973 41 H 0.046 0.954 42 H 0.007 0.993 43 H 0.070 0.930 44 H 0.174 0.826 45 H 0.163 0.837 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.101 -5.635 -26.662 27.925 hybrid contribution 0.644 1.420 0.414 1.613 sum -5.457 -4.215 -26.248 27.138 Atomic orbital electron populations 1.21774 0.92907 1.02879 1.01747 1.20338 0.96516 0.95406 0.86210 0.92415 1.60590 1.34276 1.32857 1.03406 1.22772 1.01731 0.94106 0.91696 1.21971 0.83929 0.97952 0.90713 0.87802 1.86591 1.18019 1.36736 1.93668 1.22699 0.98421 0.96611 0.92789 1.62018 1.45717 1.11854 1.05746 1.22250 0.93517 0.94685 1.00743 1.19748 0.95408 0.91362 0.86772 1.21209 1.35904 0.98725 0.98417 0.91721 1.25007 0.96205 0.94957 0.98637 1.69969 1.47523 1.10125 1.26402 0.86432 0.79383 0.79923 0.81644 1.19603 1.21027 1.21156 1.20120 1.03198 0.95345 0.94543 1.20934 0.94121 0.92622 0.98917 1.21298 1.03434 1.01747 0.91458 1.17346 0.98426 0.90081 0.83513 1.91540 1.86421 1.81594 1.51541 1.20992 1.06089 0.94387 0.99795 1.17117 0.99421 0.78474 0.93624 1.91533 1.90075 1.32211 1.96896 0.91823 0.92537 0.91513 0.82950 0.90076 0.94712 0.78621 0.95289 0.91361 0.93358 0.90732 0.97344 0.95445 0.99312 0.93023 0.82572 0.83746 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.40 37.16 0.35 -0.77 16 2 C 0.12 1.09 2.60 -68.87 -0.18 0.91 16 3 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 4 N -0.68 -6.36 5.57 -107.95 -0.60 -6.96 16 5 C 0.03 0.28 5.16 -3.83 -0.02 0.26 16 6 C 0.11 1.53 3.08 -26.74 -0.08 1.45 16 7 H 0.10 1.49 6.55 -51.93 -0.34 1.15 16 8 O -0.55 -7.78 12.72 -35.23 -0.45 -8.23 16 9 C 0.02 0.41 4.62 -3.83 -0.02 0.40 16 10 N -0.53 -11.29 4.62 -244.37 -1.13 -12.42 16 11 C 0.04 0.72 9.14 60.07 0.55 1.27 16 12 C 0.19 5.00 4.72 -4.98 -0.02 4.97 16 13 C -0.50 -14.22 8.46 -34.44 -0.29 -14.51 16 14 H 0.06 1.82 7.12 -52.48 -0.37 1.45 16 15 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 16 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.13 -1.08 4.94 -104.55 -0.52 -1.60 16 22 C -0.05 -0.35 8.85 -39.60 -0.35 -0.70 16 23 C -0.16 -1.12 10.03 -39.50 -0.40 -1.52 16 24 C 0.13 1.00 7.30 -39.43 -0.29 0.71 16 25 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 26 C -0.19 -1.51 10.01 -39.45 -0.39 -1.90 16 27 C 0.13 1.15 7.24 -39.43 -0.29 0.87 16 28 F -0.13 -1.21 16.57 2.25 0.04 -1.18 16 29 H 0.06 0.53 7.45 -51.93 -0.39 0.15 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.35 3.27 6.81 -39.29 -0.27 3.00 16 33 H 0.08 0.84 7.44 -51.93 -0.39 0.46 16 34 H 0.03 0.35 8.06 -51.93 -0.42 -0.06 16 35 H 0.37 4.31 9.05 45.56 0.41 4.72 16 36 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.05 0.82 6.47 -51.93 -0.34 0.49 16 39 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 42 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.16 1.06 6.95 -52.49 -0.37 0.70 16 45 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -30.82 382.94 -8.78 -39.59 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.12 Total: 2.63 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.04 Total: -8.77 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.99 Total: -45.43 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.45 Total: -8.23 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.08 Total: -2.28 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.82 -8.78 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584585391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.323 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds