Wall clock time and date at job start Tue Mar 31 2020 15:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47408 * 2 1 4 4 N 1.46900 * 109.47082 * 120.00220 * 2 1 3 5 5 C 1.46903 * 111.00131 * 275.00245 * 4 2 1 6 6 C 1.52998 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47135 * 59.99463 * 6 5 4 8 8 O 1.42897 * 109.46674 * 299.99470 * 6 5 4 9 9 C 1.53004 * 109.46799 * 179.97438 * 6 5 4 10 10 N 1.46898 * 109.46619 * 184.99872 * 9 6 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 6 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 9 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47212 * 89.99910 * 17 15 13 19 19 H 1.48494 * 109.47103 * 209.99646 * 17 15 13 20 20 H 1.48502 * 109.46911 * 329.99720 * 17 15 13 21 21 C 1.50698 * 109.47276 * 239.99828 * 2 1 3 22 22 C 1.38234 * 119.99040 * 264.73035 * 21 2 1 23 23 C 1.38188 * 120.05081 * 179.76548 * 22 21 2 24 24 C 1.38496 * 120.02538 * 0.50697 * 23 22 21 25 25 F 1.35097 * 120.01181 * 179.76443 * 24 23 22 26 26 C 1.38401 * 119.97227 * 359.74577 * 24 23 22 27 27 C 1.38439 * 119.95236 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.01175 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.47263 * 59.99554 * 1 2 3 30 30 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47611 * 300.00075 * 1 2 3 32 32 H 1.00901 * 111.00381 * 38.95305 * 4 2 1 33 33 H 1.08996 * 109.47237 * 59.99345 * 5 4 2 34 34 H 1.09009 * 109.46499 * 299.99967 * 5 4 2 35 35 H 0.96701 * 114.00549 * 300.00026 * 8 6 5 36 36 H 1.08994 * 109.47270 * 64.99737 * 9 6 5 37 37 H 1.08999 * 109.47017 * 304.99614 * 9 6 5 38 38 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 39 39 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 40 40 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 41 41 H 1.08997 * 109.46995 * 289.99871 * 12 10 9 42 42 H 1.09001 * 109.46848 * 49.99877 * 12 10 9 43 43 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 44 44 H 1.08002 * 119.97020 * 0.02562 * 22 21 2 45 45 H 1.07997 * 119.98718 * 180.24924 * 23 22 21 46 46 H 1.08000 * 120.02399 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0823 0.2225 2.3470 6 6 2.5961 -0.5330 3.5742 7 1 3.5915 -0.9264 3.3683 8 8 1.7097 -1.6130 3.8741 9 6 2.6620 0.4203 4.7692 10 7 3.2668 -0.2721 5.9149 11 6 4.6744 -0.5982 5.6499 12 6 3.1330 0.5246 7.1419 13 6 3.5374 -0.3102 8.3296 14 1 3.8618 -1.3305 8.1871 15 6 3.4932 0.2284 9.5980 16 7 3.0987 1.4709 9.7713 17 14 3.9952 -0.8062 11.0701 18 1 5.4497 -0.6399 11.3191 19 1 3.2346 -0.3658 12.2670 20 1 3.7003 -2.2353 10.7943 21 6 2.0323 -0.7104 -1.2304 22 6 2.3663 -2.0503 -1.1667 23 6 2.8225 -2.7042 -2.2954 24 6 2.9555 -2.0150 -3.4893 25 9 3.4060 -2.6534 -4.5914 26 6 2.6264 -0.6723 -3.5530 27 6 2.1639 -0.0196 -2.4231 28 9 1.8418 1.2910 -2.4840 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.4495 -1.4980 1.4100 33 1 1.0870 0.6162 2.5525 34 1 2.7588 1.0461 2.1182 35 1 0.8037 -1.3361 4.0681 36 1 1.6550 0.7448 5.0310 37 1 3.2673 1.2884 4.5084 38 1 5.0780 -1.1714 6.4846 39 1 5.2449 0.3232 5.5323 40 1 4.7449 -1.1883 4.7361 41 1 3.7773 1.4014 7.0778 42 1 2.0968 0.8428 7.2573 43 1 3.0672 1.8498 10.6637 44 1 2.2666 -2.5875 -0.2351 45 1 3.0793 -3.7520 -2.2454 46 1 2.7294 -0.1342 -4.4837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584585392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:46 Heat of formation + Delta-G solvation = -111.289941 kcal Electronic energy + Delta-G solvation = -27440.380337 eV Core-core repulsion = 23193.897714 eV Total energy + Delta-G solvation = -4246.482622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.36266 -49.33808 -39.69832 -38.35649 -36.57451 -35.34818 -32.55589 -32.03713 -31.20710 -29.66475 -28.71597 -27.06679 -25.84846 -24.24823 -23.78965 -22.93831 -21.37857 -21.11454 -20.16737 -18.59234 -17.57817 -16.98164 -16.49070 -16.32109 -16.13465 -16.02410 -15.66365 -15.56941 -15.02419 -14.87208 -14.76376 -14.69521 -14.29425 -14.15421 -13.68711 -13.44886 -13.38612 -13.11913 -12.88656 -12.62417 -12.23241 -12.12588 -11.99355 -11.88642 -11.62193 -11.44495 -11.32164 -11.13033 -10.90274 -10.76905 -10.70042 -10.30275 -10.04171 -9.65303 -9.42831 -9.13705 -8.99486 -8.67311 -8.44171 -7.20876 -6.03167 -4.04062 0.57098 0.65886 2.98676 3.32021 3.38069 3.43114 3.48649 3.67702 4.04571 4.23877 4.29316 4.42692 4.49695 4.62209 4.72872 4.75114 4.91648 4.92469 5.06469 5.19237 5.28317 5.34320 5.36608 5.44183 5.47507 5.55254 5.57243 5.61138 5.68847 5.74494 5.78420 5.88791 6.03700 6.17837 6.31807 6.38809 6.40141 6.72013 6.77182 7.12772 7.25800 7.31897 7.79593 7.90940 8.08791 8.19407 8.54738 9.03966 9.60153 11.07812 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.001947 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.548309 B =14377.978393 C =14865.579771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 H 0.091 0.909 4 N -0.676 5.676 5 C 0.028 3.972 6 C 0.114 3.886 7 H 0.105 0.895 8 O -0.546 6.546 9 C 0.025 3.975 10 N -0.530 5.530 11 C 0.036 3.964 12 C 0.193 3.807 13 C -0.505 4.505 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.111 4.111 22 C -0.038 4.038 23 C -0.163 4.163 24 C 0.122 3.878 25 F -0.134 7.134 26 C -0.194 4.194 27 C 0.129 3.871 28 F -0.131 7.131 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.350 0.650 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.366 0.634 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.009 0.991 40 H 0.047 0.953 41 H -0.011 1.011 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -3.943 -27.110 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 H 0.110 0.890 4 N -0.308 5.308 5 C -0.102 4.102 6 C 0.054 3.946 7 H 0.123 0.877 8 O -0.350 6.350 9 C -0.105 4.105 10 N -0.254 5.254 11 C -0.112 4.112 12 C 0.068 3.932 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.540 5.540 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.113 4.113 22 C -0.056 4.056 23 C -0.182 4.182 24 C 0.103 3.897 25 F -0.113 7.113 26 C -0.214 4.214 27 C 0.109 3.891 28 F -0.109 7.109 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.171 0.829 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.212 0.788 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.007 0.993 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.168 0.832 45 H 0.160 0.840 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.530 -4.491 -27.175 27.769 hybrid contribution -0.642 1.123 0.743 1.492 sum -4.173 -3.368 -26.432 26.970 Atomic orbital electron populations 1.22468 0.95573 1.02773 1.02866 1.20309 0.93082 0.97528 0.87813 0.89045 1.60448 1.57441 1.09884 1.03043 1.22732 1.00306 0.95893 0.91284 1.22008 0.94652 0.87613 0.90327 0.87729 1.86608 1.22979 1.33555 1.91824 1.22701 1.00316 0.94854 0.92628 1.62039 1.15250 1.45537 1.02583 1.22256 0.89305 0.98865 1.00785 1.19744 0.96644 0.91370 0.85460 1.21167 1.43597 0.99001 0.90570 0.91793 1.25005 0.95587 0.95093 0.99099 1.69961 1.48012 1.13595 1.22456 0.86483 0.78382 0.80598 0.81886 1.20757 1.21292 1.19717 1.19948 1.02578 0.95060 0.93699 1.20798 0.93905 0.92743 0.98171 1.21283 1.03740 1.01658 0.91533 1.17323 0.98778 0.90110 0.83497 1.91528 1.86502 1.81627 1.51607 1.20956 1.06273 0.94368 0.99758 1.17110 0.99865 0.78410 0.93669 1.91520 1.90151 1.32332 1.96918 0.91814 0.91841 0.91701 0.82941 0.94598 0.90194 0.78767 0.91301 0.95323 0.90820 0.97213 0.93391 0.99311 0.95429 0.92969 0.83220 0.83964 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.14 37.15 0.34 -0.94 16 2 C 0.12 1.02 2.57 -68.87 -0.18 0.85 16 3 H 0.09 0.83 7.45 -51.93 -0.39 0.45 16 4 N -0.68 -6.12 5.24 -107.96 -0.57 -6.69 16 5 C 0.03 0.28 5.19 -3.82 -0.02 0.26 16 6 C 0.11 1.51 3.20 -26.73 -0.09 1.42 16 7 H 0.11 1.52 6.26 -51.93 -0.33 1.19 16 8 O -0.55 -7.52 12.62 -35.23 -0.44 -7.96 16 9 C 0.02 0.41 4.60 -3.82 -0.02 0.40 16 10 N -0.53 -11.28 4.70 -244.37 -1.15 -12.43 16 11 C 0.04 0.71 9.17 60.07 0.55 1.26 16 12 C 0.19 5.01 4.72 -4.97 -0.02 4.99 16 13 C -0.50 -14.24 8.52 -34.44 -0.29 -14.53 16 14 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 15 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 16 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 17 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.11 -0.95 5.07 -104.54 -0.53 -1.48 16 22 C -0.04 -0.29 9.32 -39.60 -0.37 -0.66 16 23 C -0.16 -1.22 10.03 -39.50 -0.40 -1.62 16 24 C 0.12 1.03 7.30 -39.43 -0.29 0.74 16 25 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16 26 C -0.19 -1.59 10.01 -39.45 -0.39 -1.99 16 27 C 0.13 1.15 7.24 -39.43 -0.29 0.86 16 28 F -0.13 -1.25 16.57 2.25 0.04 -1.21 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.06 0.46 7.45 -51.93 -0.39 0.08 16 32 H 0.35 3.01 7.29 -39.29 -0.29 2.72 16 33 H 0.04 0.34 7.44 -51.93 -0.39 -0.05 16 34 H 0.08 0.83 8.06 -51.92 -0.42 0.41 16 35 H 0.37 4.00 9.05 45.56 0.41 4.41 16 36 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 37 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 38 H 0.07 1.55 6.86 -51.93 -0.36 1.20 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.05 0.81 6.21 -51.93 -0.32 0.49 16 41 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 42 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.15 1.04 6.88 -52.49 -0.36 0.68 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -30.98 383.05 -8.79 -39.77 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.11 Total: 2.27 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.09 Total: -9.02 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.98 Total: -45.14 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.44 Total: -7.96 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.38 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.98 -8.79 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584585392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.520 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds