Wall clock time and date at job start Tue Mar 31 2020 16:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48500 * 109.47221 * 240.00200 * 3 2 1 5 5 H 1.48506 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47061 * 120.00436 * 3 2 1 7 7 C 1.38811 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00461 * 163.18819 * 7 2 1 9 9 N 1.36940 * 120.00012 * 343.17858 * 7 2 1 10 10 C 1.46931 * 120.63049 * 331.85906 * 9 7 2 11 11 C 1.53192 * 108.88864 * 233.51181 * 10 9 7 12 12 C 1.53065 * 109.29735 * 305.57438 * 11 10 9 13 13 N 1.46499 * 109.45566 * 181.24921 * 12 11 10 14 14 C 1.34776 * 120.00505 * 84.78530 * 13 12 11 15 15 O 1.21559 * 119.99644 * 0.02562 * 14 13 12 16 16 C 1.47840 * 119.99986 * 180.02562 * 14 13 12 17 17 C 1.39319 * 119.88480 * 6.12744 * 16 14 13 18 18 C 1.37944 * 119.60549 * 179.97438 * 17 16 14 19 19 C 1.38085 * 119.93596 * 0.14435 * 18 17 16 20 20 C 1.39020 * 120.85716 * 0.02562 * 19 18 17 21 21 C 1.37425 * 119.76069 * 359.43351 * 20 19 18 22 22 C 1.50621 * 122.62925 * 180.97292 * 21 20 19 23 23 C 1.52732 * 110.58722 * 342.18568 * 22 21 20 24 24 C 1.53327 * 108.36436 * 51.13992 * 23 22 21 25 25 C 1.50656 * 117.70418 * 179.31796 * 20 19 18 26 26 C 1.53048 * 109.65945 * 61.15664 * 12 11 10 27 27 C 1.46928 * 120.63284 * 151.83019 * 9 7 2 28 28 H 0.97000 * 119.99946 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.58448 * 353.36997 * 10 9 7 30 30 H 1.09001 * 109.58748 * 113.64982 * 10 9 7 31 31 H 1.08996 * 109.49682 * 65.39014 * 11 10 9 32 32 H 1.09006 * 109.49383 * 185.48226 * 11 10 9 33 33 H 1.09000 * 109.33667 * 301.14069 * 12 11 10 34 34 H 0.97006 * 119.99800 * 264.78846 * 13 12 11 35 35 H 1.07994 * 120.19712 * 359.92827 * 17 16 14 36 36 H 1.08000 * 120.03210 * 180.12257 * 18 17 16 37 37 H 1.07999 * 119.57207 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.25111 * 102.47478 * 22 21 20 39 39 H 1.09003 * 109.24910 * 221.89840 * 22 21 20 40 40 H 1.08997 * 109.68827 * 170.85952 * 23 22 21 41 41 H 1.09005 * 109.68751 * 291.42259 * 23 22 21 42 42 H 1.09000 * 109.67922 * 49.98846 * 24 23 22 43 43 H 1.09004 * 109.67577 * 170.53431 * 24 23 22 44 44 H 1.08998 * 109.24812 * 282.67938 * 25 20 19 45 45 H 1.09011 * 109.24524 * 42.08691 * 25 20 19 46 46 H 1.08995 * 109.49512 * 178.75006 * 26 12 11 47 47 H 1.08999 * 109.49285 * 58.65175 * 26 12 11 48 48 H 1.08995 * 109.58440 * 246.20880 * 27 9 7 49 49 H 1.08998 * 109.58039 * 6.48845 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0556 -1.2221 -0.2711 9 7 1.3695 -2.3629 0.3421 10 6 0.2238 -2.3421 1.2619 11 6 0.4897 -3.3237 2.4075 12 6 0.8087 -4.7038 1.8273 13 7 1.0344 -5.6524 2.9207 14 6 -0.0115 -6.2754 3.4990 15 8 -1.1421 -6.0505 3.1131 16 6 0.2163 -7.2323 4.6027 17 6 1.4962 -7.3933 5.1289 18 6 1.7021 -8.2873 6.1590 19 6 0.6425 -9.0178 6.6596 20 6 -0.6373 -8.8663 6.1384 21 6 -0.8574 -7.9707 5.1196 22 6 -2.2205 -7.7395 4.5219 23 6 -3.1611 -8.8920 4.8677 24 6 -3.1076 -9.1213 6.3827 25 6 -1.7377 -9.7102 6.7272 26 6 2.0657 -4.6189 0.9584 27 6 1.8141 -3.6526 -0.2034 28 1 -0.4850 0.8401 0.0004 29 1 0.0962 -1.3370 1.6640 30 1 -0.6788 -2.6393 0.7280 31 1 1.3373 -2.9741 2.9968 32 1 -0.3936 -3.3891 3.0429 33 1 -0.0304 -5.0427 1.2199 34 1 1.9366 -5.8322 3.2284 35 1 2.3224 -6.8221 4.7321 36 1 2.6911 -8.4161 6.5734 37 1 0.8103 -9.7158 7.4664 38 1 -2.6320 -6.8095 4.9143 39 1 -2.1294 -7.6625 3.4384 40 1 -4.1785 -8.6375 4.5705 41 1 -2.8415 -9.7954 4.3481 42 1 -3.2486 -8.1736 6.9026 43 1 -3.8901 -9.8212 6.6759 44 1 -1.6621 -10.7242 6.3347 45 1 -1.6293 -9.7364 7.8116 46 1 2.3031 -5.6072 0.5647 47 1 2.8996 -4.2562 1.5593 48 1 1.0417 -4.0591 -0.8561 49 1 2.7345 -3.5117 -0.7701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590633775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:36 Heat of formation + Delta-G solvation = -6.252367 kcal Electronic energy + Delta-G solvation = -28111.299956 eV Core-core repulsion = 24423.601635 eV Total energy + Delta-G solvation = -3687.698321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.74958 -39.05821 -37.25148 -36.27861 -34.43758 -32.69015 -32.09596 -30.45766 -30.13019 -29.69889 -28.67512 -25.23164 -24.10526 -23.38368 -22.83893 -22.23934 -21.67865 -20.36881 -19.39045 -19.26205 -17.45454 -16.66637 -16.33085 -15.83018 -15.56132 -15.20543 -14.85357 -14.69576 -14.34089 -13.98717 -13.88394 -13.82025 -13.50467 -13.20046 -13.04906 -12.81509 -12.63426 -12.52322 -12.41449 -12.15624 -11.91051 -11.66736 -11.48257 -11.14479 -11.03265 -10.97455 -10.79621 -10.71246 -10.48523 -10.38152 -10.24702 -10.05630 -9.74842 -9.67851 -9.27027 -9.03955 -8.77658 -8.60979 -8.39410 -6.67627 -5.77625 -3.20961 0.74277 1.17093 2.91321 3.34411 3.39639 3.44945 3.45793 3.73011 4.38158 4.48079 4.50084 4.64647 4.74954 4.78322 4.88226 5.00848 5.06299 5.18822 5.31212 5.36748 5.41407 5.45029 5.46342 5.60845 5.63551 5.64214 5.65337 5.76613 5.83737 5.87421 5.95523 6.08657 6.12567 6.15843 6.22210 6.25000 6.25964 6.35979 6.45106 6.54068 6.62453 6.65947 6.75210 6.78985 6.92717 6.95765 7.38752 7.68236 7.74042 7.80026 8.41021 8.46207 9.21838 9.85087 10.41926 11.30900 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.002537 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.748197 B =11034.350335 C =11523.916007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.720 5.720 14 C 0.551 3.449 15 O -0.530 6.530 16 C -0.135 4.135 17 C -0.088 4.088 18 C -0.133 4.133 19 C -0.098 4.098 20 C -0.091 4.091 21 C -0.014 4.014 22 C -0.086 4.086 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.077 4.077 26 C -0.139 4.139 27 C 0.149 3.851 28 H 0.255 0.745 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.393 0.607 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.020 0.980 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -21.053 14.181 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.370 5.370 14 C 0.339 3.661 15 O -0.409 6.409 16 C -0.138 4.138 17 C -0.106 4.106 18 C -0.151 4.151 19 C -0.117 4.117 20 C -0.091 4.091 21 C -0.015 4.015 22 C -0.123 4.123 23 C -0.162 4.162 24 C -0.159 4.159 25 C -0.114 4.114 26 C -0.179 4.179 27 C 0.022 3.978 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.227 0.773 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.038 0.962 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.888 -20.703 13.849 24.924 hybrid contribution 1.116 0.816 0.294 1.414 sum 0.228 -19.887 14.144 24.405 Atomic orbital electron populations 1.70022 1.05268 1.25677 1.53569 1.25064 0.95283 0.98447 1.00794 0.86368 0.78905 0.83378 0.78090 1.20868 1.21622 1.21063 1.19128 0.92476 0.84772 1.42124 0.91709 1.44093 1.35773 1.01544 1.50111 1.20749 0.88642 0.98035 0.87801 1.22565 1.00460 0.95126 1.00480 1.21062 0.98773 0.88579 0.86749 1.46281 1.08985 1.44352 1.37361 1.18266 0.85129 0.80560 0.82179 1.90740 1.22097 1.63913 1.64138 1.20074 0.94191 1.00362 0.99139 1.21254 0.95767 0.97527 0.96084 1.20969 0.99196 0.97350 0.97568 1.21323 0.92252 0.98780 0.99315 1.19602 0.94980 0.97991 0.96559 1.19760 0.95323 0.93077 0.93362 1.20821 0.90101 0.98189 1.03144 1.21669 0.99931 0.98947 0.95637 1.21635 0.96161 1.01230 0.96894 1.20510 0.92671 0.98060 1.00179 1.22335 0.96681 0.99741 0.99128 1.20832 0.98007 0.86735 0.92272 0.93513 0.89290 0.96139 0.92756 0.92787 0.89940 0.77259 0.85641 0.85555 0.85938 0.89921 0.87811 0.91361 0.91953 0.91502 0.91600 0.90583 0.90927 0.92622 0.91886 0.96199 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -6.99 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.73 7.88 -52.48 -0.41 1.31 16 9 N -0.59 -14.85 3.00 -172.32 -0.52 -15.37 16 10 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 11 C -0.15 -2.95 5.66 -26.60 -0.15 -3.10 16 12 C 0.15 2.66 2.41 -67.87 -0.16 2.50 16 13 N -0.72 -10.47 5.02 -54.69 -0.27 -10.74 16 14 C 0.55 8.57 7.64 -12.33 -0.09 8.47 16 15 O -0.53 -9.81 12.74 5.31 0.07 -9.74 16 16 C -0.13 -1.75 5.88 -104.84 -0.62 -2.37 16 17 C -0.09 -0.91 9.52 -39.29 -0.37 -1.29 16 18 C -0.13 -1.18 10.03 -39.75 -0.40 -1.58 16 19 C -0.10 -0.87 9.60 -39.35 -0.38 -1.25 16 20 C -0.09 -0.93 5.73 -104.65 -0.60 -1.53 16 21 C -0.01 -0.18 5.77 -104.23 -0.60 -0.78 16 22 C -0.09 -1.08 4.20 -28.06 -0.12 -1.20 16 23 C -0.12 -1.19 5.97 -26.70 -0.16 -1.35 16 24 C -0.12 -0.98 6.00 -26.54 -0.16 -1.14 16 25 C -0.08 -0.60 5.67 -27.88 -0.16 -0.76 16 26 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 27 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 34 H 0.39 4.60 6.65 -40.82 -0.27 4.33 16 35 H 0.13 1.07 6.43 -52.49 -0.34 0.73 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.78 8.05 -52.49 -0.42 0.35 16 38 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 39 H 0.10 1.52 5.97 -51.93 -0.31 1.21 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.47 8.13 -51.92 -0.42 0.05 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -31.37 377.34 -11.75 -43.12 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.92 Total: 3.85 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -4.39 Total: -7.69 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.17 Total: -51.93 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.37 -11.75 -43.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590633775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.873 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds