Wall clock time and date at job start Tue Mar 31 2020 15:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47168 * 2 1 4 4 C 1.37670 * 127.14336 * 275.87809 * 3 2 1 5 5 C 1.47704 * 126.47257 * 0.02562 * 4 3 2 6 6 N 1.32817 * 119.23926 * 359.73034 * 5 4 3 7 7 C 1.32149 * 120.71437 * 179.71511 * 6 5 4 8 8 C 1.38733 * 119.22243 * 0.54732 * 7 6 5 9 9 C 1.38725 * 118.60464 * 359.72699 * 8 7 6 10 10 N 1.32151 * 119.22464 * 0.02562 * 9 8 7 11 11 N 1.31323 * 107.06029 * 179.97438 * 4 3 2 12 12 N 1.28519 * 109.88983 * 359.72735 * 11 4 3 13 13 C 1.31593 * 110.05444 * 0.45827 * 12 11 4 14 14 N 1.38188 * 126.35521 * 179.82283 * 13 12 11 15 15 C 1.46841 * 111.00402 * 100.50058 * 14 13 12 16 16 C 1.53034 * 109.52654 * 174.15938 * 15 14 13 17 17 C 1.53117 * 109.27715 * 59.18058 * 16 15 14 18 18 C 1.53124 * 109.16146 * 302.34717 * 17 16 15 19 19 H 1.08999 * 109.49768 * 297.71476 * 18 17 16 20 20 C 1.50704 * 109.50186 * 177.63410 * 18 17 16 21 21 H 1.07994 * 119.99651 * 240.07609 * 20 18 17 22 22 C 1.37875 * 119.99703 * 60.08264 * 20 18 17 23 23 N 1.31512 * 120.00540 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 119.99650 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47544 * 59.99541 * 24 22 20 26 26 H 1.48497 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46871 * 299.99505 * 24 22 20 28 28 C 1.46851 * 110.99990 * 336.29213 * 14 13 12 29 29 H 1.09000 * 109.47103 * 305.76910 * 1 2 3 30 30 H 1.08996 * 109.46665 * 65.76930 * 1 2 3 31 31 H 1.09002 * 109.46975 * 185.76728 * 1 2 3 32 32 H 1.09005 * 109.47244 * 239.99332 * 2 1 3 33 33 H 1.09010 * 109.46796 * 119.99795 * 2 1 3 34 34 H 1.07998 * 120.39085 * 180.27577 * 7 6 5 35 35 H 1.07996 * 120.69824 * 179.70809 * 8 7 6 36 36 H 1.07998 * 120.38974 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.46057 * 54.14407 * 15 14 13 38 38 H 1.09008 * 109.46424 * 294.18027 * 15 14 13 39 39 H 1.08996 * 109.50653 * 299.23880 * 16 15 14 40 40 H 1.09002 * 109.50511 * 179.11932 * 16 15 14 41 41 H 1.09005 * 109.52578 * 182.44136 * 17 16 15 42 42 H 1.08998 * 109.57363 * 62.28532 * 17 16 15 43 43 H 0.96998 * 120.00317 * 180.02562 * 23 22 20 44 44 H 1.09005 * 109.46360 * 65.82148 * 28 14 13 45 45 H 1.08996 * 109.46146 * 305.85832 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1895 2.2024 -1.0916 5 6 1.9133 1.8581 -2.5012 6 7 1.4577 0.6458 -2.7956 7 6 1.1956 0.3086 -4.0462 8 6 1.4124 1.2339 -5.0569 9 6 1.8941 2.4893 -4.7158 10 7 2.1317 2.7660 -3.4456 11 7 2.6436 3.3500 -0.6430 12 7 2.7606 3.3041 0.6360 13 6 2.3970 2.1199 1.0802 14 7 2.3939 1.7049 2.3982 15 6 1.0406 1.7627 2.9651 16 6 1.0494 1.1615 4.3724 17 6 2.0253 1.9479 5.2519 18 6 3.4170 1.9126 4.6143 19 1 3.7693 0.8822 4.5666 20 6 4.3713 2.7330 5.4434 21 1 4.8743 3.5823 5.0054 22 6 4.6021 2.3990 6.7610 23 7 3.9892 1.3649 7.2945 24 14 5.7844 3.4163 7.7890 25 1 5.3030 4.8196 7.8536 26 1 5.8573 2.8538 9.1614 27 1 7.1335 3.3838 7.1690 28 6 3.3395 2.4921 3.2000 29 1 -0.3633 0.6007 0.8338 30 1 -0.3632 0.4218 -0.9371 31 1 -0.3633 -1.0225 0.1033 32 1 1.8934 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 0.8211 -0.6772 -4.2792 35 1 1.2108 0.9821 -6.0875 36 1 2.0737 3.2316 -5.4794 37 1 0.3573 1.1962 2.3324 38 1 0.7120 2.8009 3.0157 39 1 1.3645 0.1194 4.3210 40 1 0.0479 1.2188 4.7989 41 1 2.0673 1.4964 6.2432 42 1 1.6894 2.9813 5.3364 43 1 4.1513 1.1302 8.2216 44 1 3.0002 3.5268 3.2495 45 1 4.3260 2.4552 2.7379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597290752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:15 Heat of formation + Delta-G solvation = 142.282601 kcal Electronic energy + Delta-G solvation = -28142.090068 eV Core-core repulsion = 24389.585114 eV Total energy + Delta-G solvation = -3752.504954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.82791 -41.15629 -38.39460 -35.73249 -34.07606 -34.02815 -32.89223 -31.85270 -30.53621 -30.01553 -28.92207 -25.30475 -25.00068 -24.95715 -23.99877 -23.66235 -21.85837 -21.18586 -20.48892 -18.74323 -17.99536 -17.66822 -17.03220 -16.39886 -16.17932 -15.87450 -15.40195 -14.98654 -14.68130 -14.60310 -14.33854 -14.01770 -13.88356 -13.55416 -13.12587 -12.87712 -12.60469 -12.51464 -12.42375 -11.86488 -11.60564 -11.33626 -11.27148 -11.13687 -10.92898 -10.82018 -10.71545 -10.54589 -10.41486 -10.21354 -10.07247 -9.90428 -9.60413 -9.55557 -9.25525 -9.12856 -8.74445 -8.32734 -7.96166 -5.99713 -4.05285 0.16723 0.71189 1.91113 2.17436 2.88257 3.24277 3.35028 3.38710 3.42801 3.58032 3.74826 4.04988 4.17913 4.46900 4.50000 4.65591 4.70749 4.78573 4.92631 5.07260 5.17448 5.26655 5.30989 5.46592 5.48217 5.55743 5.57966 5.70045 5.81780 5.87665 5.97166 6.07374 6.17735 6.32757 6.36485 6.50686 6.52312 6.64197 6.74231 6.85475 7.01314 7.25185 7.35842 7.61078 7.65873 7.73919 7.99093 8.10106 8.42141 8.84521 8.97847 9.59343 11.06663 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.002849 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.462523 B = 9826.082661 C =10557.559088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.108 3.892 3 N -0.451 5.451 4 C 0.190 3.810 5 C 0.415 3.585 6 N -0.513 5.513 7 C 0.155 3.845 8 C -0.232 4.232 9 C 0.157 3.843 10 N -0.481 5.481 11 N -0.219 5.219 12 N -0.316 5.316 13 C 0.391 3.609 14 N -0.460 5.460 15 C 0.065 3.935 16 C -0.116 4.116 17 C -0.115 4.115 18 C 0.056 3.944 19 H 0.036 0.964 20 C -0.514 4.514 21 H 0.057 0.943 22 C 0.064 3.936 23 N -0.890 5.890 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.082 3.918 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.174 0.826 35 H 0.151 0.849 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.261 0.739 44 H 0.047 0.953 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -6.427 -22.457 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.014 4.014 3 N -0.146 5.146 4 C -0.075 4.075 5 C 0.148 3.852 6 N -0.229 5.229 7 C -0.012 4.012 8 C -0.255 4.255 9 C -0.010 4.010 10 N -0.196 5.196 11 N -0.064 5.064 12 N -0.164 5.164 13 C 0.036 3.964 14 N -0.185 5.185 15 C -0.061 4.061 16 C -0.153 4.153 17 C -0.153 4.153 18 C 0.037 3.963 19 H 0.054 0.946 20 C -0.552 4.552 21 H 0.075 0.925 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.202 1.202 28 C -0.044 4.044 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.191 0.809 35 H 0.169 0.831 36 H 0.192 0.808 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.434 -5.420 -21.266 23.887 hybrid contribution -0.231 -0.391 -0.472 0.655 sum -9.665 -5.811 -21.738 24.489 Atomic orbital electron populations 1.22129 0.94140 1.03132 1.02605 1.22001 0.95648 0.78232 1.05540 1.46225 1.49242 1.13823 1.05262 1.21001 1.10139 0.90023 0.86303 1.19163 0.91161 0.85367 0.89489 1.68369 1.13851 1.18233 1.22470 1.23216 0.91204 0.99740 0.87020 1.23021 1.03476 0.96398 1.02574 1.23357 0.89708 0.95271 0.92648 1.68404 1.15807 1.34277 1.01080 1.74454 1.12098 1.16566 1.03276 1.74999 1.23882 1.14854 1.02661 1.22894 0.97547 0.86768 0.89212 1.58776 1.10262 1.54327 0.95109 1.22315 0.86248 1.00170 0.97387 1.21713 1.00011 1.00785 0.92833 1.21728 0.94752 0.97679 1.01122 1.18728 0.93261 0.97173 0.87124 0.94608 1.21051 1.24942 1.13418 0.95819 0.92487 1.24904 0.95959 0.95086 0.97747 1.69863 1.42535 1.26607 1.13866 0.86646 0.81624 0.80509 0.79171 1.20231 1.21356 1.20244 1.22449 0.92493 0.94577 0.94842 0.92134 0.91983 0.90322 0.87505 0.88058 0.80899 0.83083 0.80754 0.91818 0.93895 0.91693 0.92522 0.88565 0.94530 0.92950 0.93471 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.13 37.16 0.38 -1.26 16 2 C 0.11 1.30 6.08 -4.04 -0.02 1.28 16 3 N -0.45 -7.23 2.83 -114.76 -0.32 -7.55 16 4 C 0.19 3.22 7.92 -153.68 -1.22 2.00 16 5 C 0.41 5.75 7.58 -156.84 -1.19 4.56 16 6 N -0.51 -5.50 7.37 -11.23 -0.08 -5.59 16 7 C 0.15 1.04 11.30 -17.23 -0.19 0.85 16 8 C -0.23 -1.28 10.17 -39.22 -0.40 -1.68 16 9 C 0.16 1.25 11.30 -17.23 -0.19 1.06 16 10 N -0.48 -6.26 10.34 -11.23 -0.12 -6.38 16 11 N -0.22 -4.35 12.19 32.59 0.40 -3.96 16 12 N -0.32 -6.62 11.49 30.26 0.35 -6.28 16 13 C 0.39 7.39 6.82 -319.28 -2.18 5.21 16 14 N -0.46 -8.77 4.60 -174.65 -0.80 -9.57 16 15 C 0.07 1.12 5.39 -3.84 -0.02 1.10 16 16 C -0.12 -2.07 6.09 -26.65 -0.16 -2.24 16 17 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 18 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 19 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.51 -13.96 8.56 -34.44 -0.29 -14.26 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 22 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -24.81 11.35 55.43 0.63 -24.18 16 24 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.08 1.80 4.15 -3.83 -0.02 1.78 16 29 H 0.06 0.68 5.80 -51.93 -0.30 0.38 16 30 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 1.17 6.60 -51.93 -0.34 0.83 16 33 H 0.10 1.23 8.08 -51.92 -0.42 0.81 16 34 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 36 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.06 0.93 5.58 -51.93 -0.29 0.64 16 38 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 2.42 6.15 -51.93 -0.32 2.10 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.05 1.08 8.07 -51.93 -0.42 0.67 16 45 H 0.07 1.58 8.10 -51.93 -0.42 1.16 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -32.67 364.15 -11.69 -44.36 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.25 Total: -1.11 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -5.95 Total: -1.49 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.05 Total: -63.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.67 -11.69 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597290752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.641 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds