Wall clock time and date at job start Tue Mar 31 2020 15:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47360 * 2 1 4 4 C 1.50698 * 109.47163 * 120.00355 * 2 1 3 5 5 H 1.08004 * 120.00031 * 119.99993 * 4 2 1 6 6 C 1.37876 * 119.99865 * 299.99356 * 4 2 1 7 7 N 1.31510 * 120.00080 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00025 * 0.02562 * 6 4 2 9 9 H 1.48491 * 109.47076 * 89.99618 * 8 6 4 10 10 H 1.48498 * 109.46938 * 209.99811 * 8 6 4 11 11 H 1.48503 * 109.46895 * 329.99619 * 8 6 4 12 12 N 1.46901 * 109.46940 * 239.99856 * 2 1 3 13 13 C 1.46902 * 111.00264 * 306.04822 * 12 2 1 14 14 C 1.38184 * 110.99869 * 70.00121 * 12 2 1 15 15 N 1.31592 * 126.35684 * 344.43460 * 14 12 2 16 16 N 1.28526 * 110.05358 * 179.97438 * 15 14 12 17 17 C 1.31311 * 109.89353 * 359.73981 * 16 15 14 18 18 C 1.47703 * 126.47076 * 180.25643 * 17 16 15 19 19 N 1.32817 * 119.24460 * 179.90569 * 18 17 16 20 20 C 1.32149 * 120.71576 * 179.76131 * 19 18 17 21 21 C 1.38726 * 119.22146 * 0.50367 * 20 19 18 22 22 C 1.38727 * 118.60730 * 359.75457 * 21 20 19 23 23 N 1.32144 * 119.22507 * 359.97438 * 22 21 20 24 24 N 1.36238 * 126.36010 * 164.41174 * 14 12 2 25 25 C 1.46502 * 127.14564 * 359.97438 * 24 14 12 26 26 C 1.53006 * 109.47037 * 274.92607 * 25 24 14 27 27 C 1.52996 * 117.49625 * 244.10031 * 26 25 24 28 28 C 1.52997 * 60.00269 * 252.51113 * 27 26 25 29 29 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46775 * 299.99621 * 1 2 3 31 31 H 1.08994 * 109.47212 * 59.99675 * 1 2 3 32 32 H 0.97007 * 120.00202 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46946 * 190.24669 * 13 12 2 34 34 H 1.08999 * 109.47016 * 310.24656 * 13 12 2 35 35 H 1.09000 * 109.46909 * 70.24685 * 13 12 2 36 36 H 1.08000 * 120.38731 * 180.25965 * 20 19 18 37 37 H 1.07997 * 120.69551 * 179.77055 * 21 20 19 38 38 H 1.07997 * 120.38975 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47269 * 34.92085 * 25 24 14 40 40 H 1.08999 * 109.47177 * 154.92413 * 25 24 14 41 41 H 1.08999 * 115.55066 * 29.80996 * 26 25 24 42 42 H 1.09002 * 117.49987 * 359.97438 * 27 26 25 43 43 H 1.09003 * 117.49913 * 145.02041 * 27 26 25 44 44 H 1.09001 * 117.50017 * 252.51809 * 28 27 26 45 45 H 1.08998 * 117.49854 * 107.48845 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5564 8 14 0.6250 1.2791 2.6541 9 1 -0.8025 0.8728 2.6998 10 1 0.9762 1.9950 3.9068 11 1 0.8473 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7687 0.0503 -2.3373 15 7 0.9395 1.0671 -2.4379 16 7 0.9500 1.5273 -3.6380 17 6 1.7897 0.8364 -4.3740 18 6 2.0905 1.0562 -5.8033 19 7 2.9712 0.2683 -6.4097 20 6 3.2587 0.4360 -7.6885 21 6 2.6366 1.4553 -8.3946 22 6 1.7257 2.2636 -7.7301 23 7 1.4778 2.0405 -6.4514 24 7 2.3342 -0.1337 -3.5630 25 6 3.3219 -1.1485 -3.9383 26 6 4.7259 -0.6437 -3.5989 27 6 5.6952 -0.4174 -4.7608 28 6 5.8949 -1.6061 -3.8185 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9036 -0.5279 4.4375 33 1 1.9446 -2.5919 -2.0940 34 1 1.5488 -2.5594 -0.3589 35 1 0.3750 -1.9516 -1.5510 36 1 3.9726 -0.2104 -8.1773 37 1 2.8565 1.6161 -9.4396 38 1 1.2250 3.0658 -8.2517 39 1 3.1241 -2.0688 -3.3887 40 1 3.2545 -1.3428 -5.0087 41 1 4.7880 0.0384 -2.7510 42 1 5.3329 -0.6285 -5.7669 43 1 6.3953 0.4139 -4.6775 44 1 6.7262 -1.5569 -3.1153 45 1 5.6637 -2.5988 -4.2048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597437160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:14 Heat of formation + Delta-G solvation = 176.158133 kcal Electronic energy + Delta-G solvation = -28626.925496 eV Core-core repulsion = 24875.889495 eV Total energy + Delta-G solvation = -3751.036001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.09023 -41.84514 -39.32829 -38.65987 -35.61775 -34.87658 -34.72395 -33.63586 -31.80058 -30.54519 -28.85708 -27.30648 -27.09632 -25.80754 -25.38812 -23.59356 -23.17852 -22.66395 -21.91804 -21.00785 -18.95134 -18.77259 -18.38222 -17.79627 -17.49519 -17.13778 -16.78509 -16.42356 -16.05387 -15.87162 -15.42528 -15.40932 -15.13116 -15.06996 -14.55430 -14.37190 -14.17490 -13.96621 -13.51028 -13.28353 -12.98362 -12.89507 -12.72592 -12.43761 -12.34277 -12.12795 -11.97395 -11.90280 -11.73955 -11.60507 -11.54461 -11.31373 -11.12105 -11.02445 -10.86799 -10.80691 -10.28676 -10.19574 -9.20960 -8.33613 -6.36416 -0.59210 0.16766 0.79998 1.02943 1.27411 1.34913 1.45627 1.66157 2.28486 2.34651 2.76530 2.83399 2.88775 3.01723 3.11076 3.63241 3.69658 3.76619 3.80745 3.88247 4.01653 4.13680 4.18007 4.21029 4.25403 4.37090 4.39640 4.42892 4.52526 4.60258 4.66949 4.76095 4.79944 4.89360 4.91796 4.97383 5.01048 5.08565 5.17719 5.23108 5.28594 5.38210 5.46367 5.55643 5.77341 5.99403 6.11010 6.47066 6.67078 6.94261 7.27496 7.57407 8.81533 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.003832 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.113080 B = 7304.768675 C = 8420.123570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.209 3.791 3 H 0.022 0.978 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.033 3.967 7 N -0.934 5.934 8 Si 0.932 3.068 9 H -0.264 1.264 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.446 5.446 13 C 0.035 3.965 14 C 0.381 3.619 15 N -0.355 5.355 16 N -0.269 5.269 17 C 0.207 3.793 18 C 0.381 3.619 19 N -0.513 5.513 20 C 0.146 3.854 21 C -0.194 4.194 22 C 0.138 3.862 23 N -0.520 5.520 24 N -0.446 5.446 25 C 0.141 3.859 26 C -0.191 4.191 27 C -0.153 4.153 28 C -0.150 4.150 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.269 0.731 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.219 0.781 37 H 0.200 0.800 38 H 0.204 0.796 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 -1.522 -30.277 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.102 3.898 3 H 0.040 0.960 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.166 4.166 7 N -0.574 5.574 8 Si 0.760 3.240 9 H -0.190 1.190 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.169 5.169 13 C -0.111 4.111 14 C 0.024 3.976 15 N -0.202 5.202 16 N -0.112 5.112 17 C -0.059 4.059 18 C 0.113 3.887 19 N -0.229 5.229 20 C -0.020 4.020 21 C -0.216 4.216 22 C -0.027 4.027 23 N -0.236 5.236 24 N -0.139 5.139 25 C 0.021 3.979 26 C -0.210 4.210 27 C -0.189 4.189 28 C -0.187 4.187 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.235 0.765 37 H 0.217 0.783 38 H 0.220 0.780 39 H 0.117 0.883 40 H 0.154 0.846 41 H 0.087 0.913 42 H 0.138 0.862 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.999 -0.748 -28.678 29.120 hybrid contribution -0.209 0.292 0.063 0.365 sum 4.789 -0.456 -28.615 29.017 Atomic orbital electron populations 1.22742 0.98621 1.01583 1.00839 1.19436 0.91052 0.93581 0.85722 0.95967 1.20947 1.31359 1.13190 0.88831 0.92178 1.25418 0.96864 0.98917 0.95436 1.69956 1.47007 1.41925 0.98489 0.86117 0.79910 0.81034 0.76950 1.19017 1.22011 1.19147 1.58836 1.56670 1.03758 0.97674 1.22500 0.97262 0.86850 1.04472 1.22936 0.92368 0.96275 0.85982 1.74870 1.20041 1.13423 1.11888 1.74317 1.16937 1.22174 0.97765 1.21665 0.99682 0.92288 0.92313 1.18781 0.91285 0.89957 0.88634 1.68250 1.14310 1.27103 1.13253 1.24084 0.95409 0.95020 0.87442 1.23539 0.97012 0.96039 1.05039 1.23997 0.93112 0.97780 0.87781 1.68275 1.25493 1.17858 1.11948 1.46198 1.33628 1.26681 1.07397 1.21957 0.83863 0.87828 1.04279 1.22291 0.90985 1.05947 1.01812 1.23088 1.00426 0.99874 0.95544 1.23026 0.97537 0.95767 1.02406 0.92026 0.94358 0.91573 0.92193 0.89448 0.89197 0.94496 0.76484 0.78311 0.77958 0.88297 0.84588 0.91262 0.86167 0.89591 0.88610 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -8.49 7.89 71.98 0.57 -7.92 16 2 C 0.21 10.55 1.62 44.17 0.07 10.62 16 3 H 0.02 1.25 7.04 -2.39 -0.02 1.23 16 4 C -0.50 -28.57 8.40 25.60 0.22 -28.35 16 5 H 0.06 3.63 7.43 -2.91 -0.02 3.61 16 6 C 0.03 1.92 5.45 84.66 0.46 2.38 16 7 N -0.93 -57.40 13.96 21.45 0.30 -57.10 16 8 Si 0.93 47.21 24.37 68.60 1.67 48.88 16 9 H -0.26 -12.75 6.87 99.48 0.68 -12.06 16 10 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 11 H -0.27 -13.65 6.53 99.48 0.65 -13.00 16 12 N -0.45 -19.34 4.72 -711.29 -3.36 -22.69 16 13 C 0.04 1.28 8.42 127.69 1.08 2.36 16 14 C 0.38 16.02 6.61 260.25 1.72 17.74 16 15 N -0.35 -16.51 9.25 -58.19 -0.54 -17.05 16 16 N -0.27 -11.74 12.19 -50.82 -0.62 -12.36 16 17 C 0.21 7.55 7.92 136.12 1.08 8.62 16 18 C 0.38 10.67 7.58 137.22 1.04 11.71 16 19 N -0.51 -9.88 7.15 -189.44 -1.35 -11.23 16 20 C 0.15 1.32 11.30 84.76 0.96 2.28 16 21 C -0.19 -1.25 10.17 22.50 0.23 -1.02 16 22 C 0.14 1.89 11.30 84.76 0.96 2.85 16 23 N -0.52 -13.60 10.34 -189.45 -1.96 -15.56 16 24 N -0.45 -15.42 2.83 -517.00 -1.46 -16.89 16 25 C 0.14 3.61 5.98 86.38 0.52 4.12 16 26 C -0.19 -4.84 6.01 -10.79 -0.06 -4.91 16 27 C -0.15 -2.75 10.18 30.59 0.31 -2.44 16 28 C -0.15 -2.71 10.25 30.59 0.31 -2.40 16 29 H 0.06 2.72 6.56 -2.39 -0.02 2.70 16 30 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 31 H 0.07 3.11 5.81 -2.39 -0.01 3.09 16 32 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 33 H 0.09 2.52 6.04 -2.39 -0.01 2.50 16 34 H 0.09 3.53 6.64 -2.39 -0.02 3.51 16 35 H 0.04 1.31 6.82 -2.39 -0.02 1.29 16 36 H 0.22 -0.09 8.06 -2.91 -0.02 -0.12 16 37 H 0.20 -0.62 8.06 -2.91 -0.02 -0.65 16 38 H 0.20 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.10 2.38 5.96 -2.39 -0.01 2.37 16 40 H 0.14 2.84 5.73 -2.39 -0.01 2.82 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.12 1.66 7.42 -2.39 -0.02 1.65 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -81.15 358.14 3.09 -78.06 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.95 Total: 10.30 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 9.45 Total: 15.64 kcal Atomic # 7 Polarization: -143.89 SS G_CDS: -8.99 Total: -152.88 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.67 Total: 48.88 kcal Total: -81.15 3.09 -78.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597437160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.215 kcal (2) G-P(sol) polarization free energy of solvation -81.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds