Wall clock time and date at job start Tue Mar 31 2020 15:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99802 * 2 1 4 4 N 1.46501 * 109.47201 * 122.43252 * 3 2 1 5 5 C 1.37465 * 127.18335 * 89.00629 * 4 3 2 6 6 C 1.47988 * 126.47323 * 0.02883 * 5 4 3 7 7 C 1.41019 * 126.25246 * 345.01817 * 6 5 4 8 8 N 1.30637 * 108.08357 * 180.02562 * 7 6 5 9 9 N 1.39998 * 108.58534 * 0.02562 * 8 7 6 10 10 H 0.97003 * 125.86506 * 179.97438 * 9 8 7 11 11 C 1.34821 * 108.26005 * 359.73287 * 9 8 7 12 12 N 1.31215 * 107.05877 * 179.97438 * 5 4 3 13 13 N 1.28514 * 109.96059 * 0.02562 * 12 5 4 14 14 C 1.31213 * 110.09992 * 359.97438 * 13 12 5 15 15 N 1.38574 * 126.37523 * 179.97438 * 14 13 12 16 16 C 1.46902 * 111.00168 * 295.05083 * 15 14 13 17 17 C 1.50704 * 109.47280 * 195.47741 * 16 15 14 18 18 H 1.07995 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99801 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46944 * 60.00024 * 21 19 17 23 23 H 1.48499 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46842 * 300.00369 * 21 19 17 25 25 C 1.46899 * 111.00771 * 59.00806 * 15 14 13 26 26 C 1.52998 * 109.47280 * 69.99268 * 25 15 14 27 27 C 1.52994 * 117.50224 * 243.75424 * 26 25 15 28 28 C 1.52992 * 117.50315 * 175.09053 * 26 25 15 29 29 H 1.08003 * 120.00151 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00351 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00151 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47071 * 2.42761 * 3 2 1 33 33 H 1.09000 * 109.46911 * 242.42628 * 3 2 1 34 34 H 1.08002 * 125.95946 * 0.02562 * 7 6 5 35 35 H 1.07993 * 126.20575 * 180.26547 * 11 9 8 36 36 H 1.09005 * 109.47103 * 315.47959 * 16 15 14 37 37 H 1.08999 * 109.46912 * 75.47688 * 16 15 14 38 38 H 0.97000 * 120.00026 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.47550 * 190.00237 * 25 15 14 40 40 H 1.09005 * 109.46738 * 309.99800 * 25 15 14 41 41 H 1.09004 * 115.54459 * 29.42433 * 26 25 15 42 42 H 1.08996 * 117.50163 * 0.02562 * 27 26 25 43 43 H 1.09001 * 117.50196 * 145.01989 * 27 26 25 44 44 H 1.08996 * 117.50204 * 214.98482 * 28 26 25 45 45 H 1.09002 * 117.49746 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9491 1.3577 1.1658 5 6 4.2458 0.9082 1.2450 6 6 5.0243 0.2723 0.1589 7 6 4.5048 -0.2524 -1.0425 8 7 5.5009 -0.7266 -1.7421 9 7 6.6858 -0.5270 -1.0236 10 1 7.5754 -0.7850 -1.3116 11 6 6.3783 0.0903 0.1349 12 7 4.6634 1.1505 2.4651 13 7 3.7289 1.7126 3.1451 14 6 2.6586 1.8640 2.4013 15 7 1.4572 2.4310 2.7956 16 6 0.8097 1.6216 3.8366 17 6 -0.6331 2.0359 3.9703 18 1 -1.0295 2.8216 3.3442 19 6 -1.4472 1.4112 4.8911 20 7 -0.9647 0.4541 5.6530 21 14 -3.2358 1.9243 5.0563 22 1 -3.9323 1.7153 3.7615 23 1 -3.8903 1.1061 6.1087 24 1 -3.3065 3.3596 5.4303 25 6 1.6516 3.8145 3.2495 26 6 1.9969 4.7006 2.0510 27 6 3.3762 5.3626 2.0359 28 6 2.1253 6.2050 2.2983 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3559 2.1331 0.0435 33 1 2.6570 1.3819 -0.9109 34 1 3.4648 -0.2608 -1.3336 35 1 7.0755 0.3852 0.9051 36 1 0.8612 0.5679 3.5622 37 1 1.3213 1.7750 4.7868 38 1 -1.5374 0.0149 6.3011 39 1 0.7355 4.1758 3.7166 40 1 2.4662 3.8484 3.9730 41 1 1.5813 4.3814 1.0952 42 1 4.0378 5.1665 2.8795 43 1 3.8679 5.4793 1.0701 44 1 1.7946 6.8755 1.5052 45 1 1.9643 6.5634 3.3151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599215900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:47 Heat of formation + Delta-G solvation = 215.861984 kcal Electronic energy + Delta-G solvation = -28461.031947 eV Core-core repulsion = 24711.717634 eV Total energy + Delta-G solvation = -3749.314313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38687 -41.18787 -37.81042 -35.91139 -35.57758 -32.66497 -32.52085 -31.79802 -31.20300 -28.24601 -27.48086 -26.67168 -25.32191 -23.19137 -22.39601 -22.08122 -21.79413 -20.66703 -20.52766 -19.63247 -19.32895 -18.18282 -16.99369 -16.16347 -15.88550 -15.62673 -15.27841 -14.93007 -14.69372 -14.49717 -14.23280 -14.16604 -13.95563 -13.46551 -13.28144 -12.95315 -12.46803 -12.19434 -11.89149 -11.76769 -11.36700 -11.30154 -11.27149 -11.03081 -10.98650 -10.82251 -10.61751 -10.22831 -10.14403 -10.01803 -9.94744 -9.80436 -9.60915 -9.47077 -9.42731 -9.31806 -8.51075 -7.89713 -7.73833 -6.07825 -4.11661 1.44728 1.94454 2.17113 2.56514 2.80698 2.99457 3.29705 3.34925 3.36590 3.57426 4.06227 4.33127 4.41276 4.57588 4.66617 4.80568 4.82877 4.99776 5.05976 5.21130 5.21792 5.23725 5.27689 5.31117 5.48883 5.67121 5.78672 5.82279 5.87939 6.01631 6.06177 6.15431 6.20074 6.24811 6.33026 6.44556 6.49528 6.67010 6.69789 6.80441 6.94713 6.98893 7.23970 7.33695 7.34813 7.72647 7.88108 8.04721 8.42014 8.93942 9.28074 9.52349 11.02461 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.004119 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.844553 B = 6796.342573 C = 7812.749643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.201 4.201 3 C 0.144 3.856 4 N -0.460 5.460 5 C 0.238 3.762 6 C -0.156 4.156 7 C 0.064 3.936 8 N -0.291 5.291 9 N -0.472 5.472 10 H 0.444 0.556 11 C 0.107 3.893 12 N -0.288 5.288 13 N -0.319 5.319 14 C 0.389 3.611 15 N -0.465 5.465 16 C 0.212 3.788 17 C -0.513 4.513 18 H 0.066 0.934 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.102 3.898 26 C -0.142 4.142 27 C -0.184 4.184 28 C -0.176 4.176 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.188 0.812 35 H 0.190 0.810 36 H 0.029 0.971 37 H 0.010 0.990 38 H 0.264 0.736 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 2.570 -14.760 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.220 4.220 3 C 0.022 3.978 4 N -0.153 5.153 5 C -0.028 4.028 6 C -0.171 4.171 7 C -0.125 4.125 8 N -0.112 5.112 9 N -0.180 5.180 10 H 0.288 0.712 11 C -0.044 4.044 12 N -0.129 5.129 13 N -0.162 5.162 14 C 0.033 3.967 15 N -0.192 5.192 16 C 0.088 3.912 17 C -0.552 4.552 18 H 0.084 0.916 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.026 4.026 26 C -0.161 4.161 27 C -0.221 4.221 28 C -0.214 4.214 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.205 0.795 35 H 0.207 0.793 36 H 0.047 0.953 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.285 1.942 -14.859 18.759 hybrid contribution -1.255 0.238 0.369 1.330 sum 10.029 2.181 -14.491 17.758 Atomic orbital electron populations 1.23979 0.95502 1.02748 0.94492 1.22928 0.96521 0.97367 1.05138 1.20903 0.92794 0.98180 0.85964 1.46314 1.11387 1.45899 1.11669 1.21441 0.83038 1.03459 0.94858 1.17378 0.91712 1.12645 0.95338 1.24196 0.99374 0.96839 0.92049 1.77229 0.90425 1.23934 1.19654 1.46188 1.09440 1.47613 1.14725 0.71193 1.22597 0.96346 0.95294 0.90179 1.74218 1.23201 1.15358 1.00169 1.74582 0.98430 1.18339 1.24877 1.22686 0.93693 0.97825 0.82467 1.59077 1.12941 1.02961 1.44206 1.19782 0.93440 0.91801 0.86145 1.21002 0.93886 1.20302 1.19960 0.91577 1.24954 0.98787 0.94959 0.95489 1.69962 1.36327 1.24073 1.22714 0.86547 0.84451 0.78579 0.77749 1.20164 1.21351 1.20129 1.21677 1.02117 0.85289 0.93482 1.22399 0.99303 0.93620 1.00765 1.22993 0.91287 1.05336 1.02465 1.22893 1.02294 0.93635 1.02570 0.87542 0.87987 0.87171 0.87655 0.89046 0.79485 0.79280 0.95275 0.97166 0.92677 0.88134 0.93621 0.87984 0.88977 0.89802 0.89206 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 14.32 29.01 0.42 -1.30 16 2 C -0.20 -2.67 8.97 -36.03 -0.32 -2.99 16 3 C 0.14 1.92 5.83 -5.19 -0.03 1.89 16 4 N -0.46 -7.81 2.82 -115.90 -0.33 -8.14 16 5 C 0.24 4.01 7.91 -153.84 -1.22 2.79 16 6 C -0.16 -2.06 6.05 -105.42 -0.64 -2.70 16 7 C 0.06 0.75 10.76 -17.01 -0.18 0.57 16 8 N -0.29 -3.32 12.66 30.83 0.39 -2.93 16 9 N -0.47 -4.12 7.33 30.67 0.22 -3.90 16 10 H 0.44 2.19 8.96 -182.67 -1.64 0.55 16 11 C 0.11 1.10 11.96 -16.82 -0.20 0.89 16 12 N -0.29 -5.70 12.22 32.60 0.40 -5.31 16 13 N -0.32 -7.02 11.93 30.35 0.36 -6.66 16 14 C 0.39 7.91 5.81 -318.62 -1.85 6.06 16 15 N -0.47 -9.79 4.46 -175.82 -0.78 -10.58 16 16 C 0.21 5.44 4.68 -4.97 -0.02 5.42 16 17 C -0.51 -13.58 8.39 -34.44 -0.29 -13.87 16 18 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 21 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.10 1.95 5.06 -3.83 -0.02 1.93 16 26 C -0.14 -2.22 5.40 -90.63 -0.49 -2.71 16 27 C -0.18 -2.62 10.18 -26.70 -0.27 -2.89 16 28 C -0.18 -2.32 10.25 -26.70 -0.27 -2.60 16 29 H 0.11 1.42 7.84 -52.48 -0.41 1.01 16 30 H 0.10 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.11 1.43 7.69 -52.48 -0.40 1.03 16 32 H 0.11 1.42 7.79 -51.93 -0.40 1.01 16 33 H 0.09 0.96 6.15 -51.93 -0.32 0.64 16 34 H 0.19 1.90 5.06 -52.49 -0.27 1.63 16 35 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.03 0.83 7.98 -51.93 -0.41 0.42 16 37 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.10 2.02 7.04 -51.93 -0.37 1.65 16 40 H 0.05 0.93 7.57 -51.93 -0.39 0.53 16 41 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -33.14 383.33 -11.25 -44.40 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.52 Total: 4.78 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -5.49 Total: -7.96 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 1.00 Total: -62.77 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.14 -11.25 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599215900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.261 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 227.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 215.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds