Wall clock time and date at job start Tue Mar 31 2020 15:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99802 * 2 1 4 4 N 1.46501 * 109.47201 * 122.43252 * 3 2 1 5 5 C 1.37465 * 127.18335 * 89.00629 * 4 3 2 6 6 C 1.47988 * 126.47323 * 0.02883 * 5 4 3 7 7 C 1.41019 * 126.25246 * 345.01817 * 6 5 4 8 8 N 1.30637 * 108.08357 * 180.02562 * 7 6 5 9 9 N 1.39998 * 108.58534 * 0.02562 * 8 7 6 10 10 H 0.97003 * 125.86506 * 179.97438 * 9 8 7 11 11 C 1.34821 * 108.26005 * 359.73287 * 9 8 7 12 12 N 1.31215 * 107.05877 * 179.97438 * 5 4 3 13 13 N 1.28514 * 109.96059 * 0.02562 * 12 5 4 14 14 C 1.31213 * 110.09992 * 359.97438 * 13 12 5 15 15 N 1.38574 * 126.37523 * 179.97438 * 14 13 12 16 16 C 1.46902 * 111.00168 * 295.05083 * 15 14 13 17 17 C 1.50704 * 109.47280 * 195.47741 * 16 15 14 18 18 H 1.07995 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99801 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46944 * 60.00024 * 21 19 17 23 23 H 1.48499 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46842 * 300.00369 * 21 19 17 25 25 C 1.46899 * 111.00771 * 59.00806 * 15 14 13 26 26 C 1.52998 * 109.47280 * 69.99268 * 25 15 14 27 27 C 1.52994 * 117.50224 * 243.75424 * 26 25 15 28 28 C 1.52992 * 117.50315 * 175.09053 * 26 25 15 29 29 H 1.08003 * 120.00151 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00351 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00151 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47071 * 2.42761 * 3 2 1 33 33 H 1.09000 * 109.46911 * 242.42628 * 3 2 1 34 34 H 1.08002 * 125.95946 * 0.02562 * 7 6 5 35 35 H 1.07993 * 126.20575 * 180.26547 * 11 9 8 36 36 H 1.09005 * 109.47103 * 315.47959 * 16 15 14 37 37 H 1.08999 * 109.46912 * 75.47688 * 16 15 14 38 38 H 0.97000 * 120.00026 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.47550 * 190.00237 * 25 15 14 40 40 H 1.09005 * 109.46738 * 309.99800 * 25 15 14 41 41 H 1.09004 * 115.54459 * 29.42433 * 26 25 15 42 42 H 1.08996 * 117.50163 * 0.02562 * 27 26 25 43 43 H 1.09001 * 117.50196 * 145.01989 * 27 26 25 44 44 H 1.08996 * 117.50204 * 214.98482 * 28 26 25 45 45 H 1.09002 * 117.49746 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9491 1.3577 1.1658 5 6 4.2458 0.9082 1.2450 6 6 5.0243 0.2723 0.1589 7 6 4.5048 -0.2524 -1.0425 8 7 5.5009 -0.7266 -1.7421 9 7 6.6858 -0.5270 -1.0236 10 1 7.5754 -0.7850 -1.3116 11 6 6.3783 0.0903 0.1349 12 7 4.6634 1.1505 2.4651 13 7 3.7289 1.7126 3.1451 14 6 2.6586 1.8640 2.4013 15 7 1.4572 2.4310 2.7956 16 6 0.8097 1.6216 3.8366 17 6 -0.6331 2.0359 3.9703 18 1 -1.0295 2.8216 3.3442 19 6 -1.4472 1.4112 4.8911 20 7 -0.9647 0.4541 5.6530 21 14 -3.2358 1.9243 5.0563 22 1 -3.9323 1.7153 3.7615 23 1 -3.8903 1.1061 6.1087 24 1 -3.3065 3.3596 5.4303 25 6 1.6516 3.8145 3.2495 26 6 1.9969 4.7006 2.0510 27 6 3.3762 5.3626 2.0359 28 6 2.1253 6.2050 2.2983 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3559 2.1331 0.0435 33 1 2.6570 1.3819 -0.9109 34 1 3.4648 -0.2608 -1.3336 35 1 7.0755 0.3852 0.9051 36 1 0.8612 0.5679 3.5622 37 1 1.3213 1.7750 4.7868 38 1 -1.5374 0.0149 6.3011 39 1 0.7355 4.1758 3.7166 40 1 2.4662 3.8484 3.9730 41 1 1.5813 4.3814 1.0952 42 1 4.0378 5.1665 2.8795 43 1 3.8679 5.4793 1.0701 44 1 1.7946 6.8755 1.5052 45 1 1.9643 6.5634 3.3151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599215900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:46 Heat of formation + Delta-G solvation = 196.657629 kcal Electronic energy + Delta-G solvation = -28461.864710 eV Core-core repulsion = 24711.717634 eV Total energy + Delta-G solvation = -3750.147076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.79643 -42.10815 -39.25599 -37.15344 -37.03018 -34.67861 -33.72059 -32.84887 -32.25723 -29.80500 -29.15134 -27.88363 -26.97214 -24.46710 -24.06039 -23.21471 -22.83254 -22.04515 -21.68440 -20.73238 -20.66680 -19.15442 -18.75438 -17.74847 -17.39133 -17.01823 -16.61555 -16.21349 -15.84784 -15.66756 -15.64118 -15.32613 -15.24391 -14.86123 -14.50246 -14.29029 -13.89100 -13.72280 -13.56066 -13.20419 -12.82932 -12.68350 -12.58430 -12.45497 -12.38883 -12.20619 -12.14435 -12.02383 -11.63920 -11.38069 -11.24555 -11.12283 -10.87607 -10.83739 -10.66142 -10.60079 -10.46003 -9.58524 -9.11337 -8.19113 -6.31525 0.38817 0.91902 1.01739 1.45357 1.48653 1.50378 1.56251 1.64783 1.89873 2.25542 2.42434 2.85624 3.04054 3.15446 3.37243 3.61537 3.78872 3.84453 3.89058 3.95854 4.01986 4.09022 4.17323 4.29747 4.41392 4.45703 4.54487 4.61499 4.71995 4.76370 4.84043 4.95072 4.98109 4.99319 5.05597 5.13754 5.16732 5.24859 5.27315 5.33459 5.62304 5.62836 5.72130 5.84346 6.00094 6.03763 6.24763 6.51659 6.61425 6.81865 7.38231 7.80608 8.92269 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.004119 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.844553 B = 6796.342573 C = 7812.749643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.204 4.204 3 C 0.140 3.860 4 N -0.456 5.456 5 C 0.264 3.736 6 C -0.196 4.196 7 C 0.070 3.930 8 N -0.304 5.304 9 N -0.451 5.451 10 H 0.462 0.538 11 C 0.134 3.866 12 N -0.322 5.322 13 N -0.357 5.357 14 C 0.369 3.631 15 N -0.453 5.453 16 C 0.236 3.764 17 C -0.517 4.517 18 H 0.076 0.924 19 C 0.007 3.993 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.265 1.265 25 C 0.106 3.894 26 C -0.155 4.155 27 C -0.180 4.180 28 C -0.152 4.152 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.199 0.801 35 H 0.213 0.787 36 H -0.008 1.008 37 H -0.033 1.033 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.023 0.977 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.528 3.538 -17.482 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.223 4.223 3 C 0.019 3.981 4 N -0.148 5.148 5 C -0.003 4.003 6 C -0.211 4.211 7 C -0.118 4.118 8 N -0.126 5.126 9 N -0.160 5.160 10 H 0.311 0.689 11 C -0.020 4.020 12 N -0.163 5.163 13 N -0.200 5.200 14 C 0.012 3.988 15 N -0.178 5.178 16 C 0.111 3.889 17 C -0.556 4.556 18 H 0.094 0.906 19 C -0.192 4.192 20 N -0.575 5.575 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.021 4.021 26 C -0.174 4.174 27 C -0.217 4.217 28 C -0.190 4.190 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.216 0.784 35 H 0.229 0.771 36 H 0.010 0.990 37 H -0.015 1.015 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.127 0.873 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.399 2.916 -17.643 21.206 hybrid contribution -1.085 -0.150 1.143 1.583 sum 10.314 2.766 -16.500 19.654 Atomic orbital electron populations 1.24114 0.95701 1.03170 0.94311 1.22976 0.96589 0.97510 1.05223 1.21204 0.92928 0.98189 0.85780 1.46441 1.11907 1.45002 1.11434 1.22037 0.82813 1.00804 0.94653 1.17465 0.92817 1.15411 0.95429 1.24326 1.00102 0.96184 0.91237 1.77224 0.90994 1.24253 1.20093 1.46233 1.09896 1.46058 1.13796 0.68935 1.22923 0.95699 0.92979 0.90405 1.74123 1.23296 1.17344 1.01565 1.74452 0.99516 1.19462 1.26578 1.22527 0.93147 0.99357 0.83819 1.58995 1.13654 1.03145 1.42044 1.19252 0.93670 0.90515 0.85456 1.21273 0.94075 1.20261 1.19959 0.90552 1.25919 1.03693 0.94694 0.94898 1.70127 1.38209 1.25568 1.23603 0.85393 0.78402 0.78481 0.78108 1.18670 1.21465 1.18948 1.21612 1.00545 0.84989 0.94945 1.22196 1.01119 0.94858 0.99223 1.22963 0.90836 1.05189 1.02673 1.23015 1.00305 0.91990 1.03661 0.87662 0.87154 0.86806 0.87726 0.85711 0.78397 0.77064 0.99019 1.01540 0.92689 0.89548 0.95847 0.87342 0.90750 0.88104 0.86402 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 14.32 67.78 0.97 -2.56 16 2 C -0.20 -5.30 8.97 25.65 0.23 -5.07 16 3 C 0.14 3.59 5.83 85.63 0.50 4.09 16 4 N -0.46 -15.55 2.82 -520.59 -1.47 -17.02 16 5 C 0.26 8.83 7.91 136.30 1.08 9.91 16 6 C -0.20 -4.83 6.05 -20.38 -0.12 -4.95 16 7 C 0.07 1.48 10.76 85.55 0.92 2.40 16 8 N -0.30 -6.09 12.66 -56.36 -0.71 -6.80 16 9 N -0.45 -6.45 7.33 -56.87 -0.42 -6.86 16 10 H 0.46 2.93 8.96 -213.38 -1.91 1.02 16 11 C 0.13 2.38 11.96 83.86 1.00 3.38 16 12 N -0.32 -13.11 12.22 -50.78 -0.62 -13.73 16 13 N -0.36 -16.54 11.93 -57.89 -0.69 -17.23 16 14 C 0.37 15.63 5.81 260.02 1.51 17.14 16 15 N -0.45 -19.95 4.46 -710.16 -3.17 -23.12 16 16 C 0.24 12.91 4.68 85.56 0.40 13.31 16 17 C -0.52 -28.21 8.39 25.60 0.21 -27.99 16 18 H 0.08 3.93 7.60 -2.91 -0.02 3.91 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.94 -56.49 13.29 21.45 0.28 -56.20 16 21 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 C 0.11 4.25 5.06 86.30 0.44 4.69 16 26 C -0.16 -4.78 5.40 -10.80 -0.06 -4.84 16 27 C -0.18 -4.94 10.18 30.62 0.31 -4.63 16 28 C -0.15 -3.71 10.25 30.61 0.31 -3.40 16 29 H 0.11 2.76 7.84 -2.91 -0.02 2.73 16 30 H 0.11 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.11 2.86 7.69 -2.91 -0.02 2.84 16 32 H 0.10 2.72 7.79 -2.39 -0.02 2.70 16 33 H 0.13 2.34 6.15 -2.39 -0.01 2.32 16 34 H 0.20 3.55 5.06 -2.91 -0.01 3.53 16 35 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 36 H -0.01 -0.51 7.98 -2.38 -0.02 -0.53 16 37 H -0.03 -2.07 8.06 -2.39 -0.02 -2.09 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.09 3.61 7.04 -2.39 -0.02 3.60 16 40 H 0.02 1.02 7.57 -2.38 -0.02 1.00 16 41 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 42 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 43 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -75.75 383.33 2.51 -73.24 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.89 Total: 20.61 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 8.17 Total: 2.30 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -6.79 Total: -140.96 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -75.75 2.51 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599215900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.897 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds