Wall clock time and date at job start Tue Mar 31 2020 16:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99984 * 2 1 4 4 H 1.48505 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47395 * 300.00532 * 3 2 1 6 6 H 1.48506 * 109.47095 * 60.00376 * 3 2 1 7 7 C 1.37883 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.46891 * 111.00231 * 170.00613 * 10 9 7 12 12 C 1.53237 * 109.34230 * 187.25208 * 11 10 9 13 13 N 1.47075 * 108.52268 * 306.17046 * 12 11 10 14 14 C 1.34777 * 120.88071 * 231.18541 * 13 12 11 15 15 O 1.21547 * 120.00141 * 5.79048 * 14 13 12 16 16 C 1.47848 * 119.99721 * 185.79174 * 14 13 12 17 17 C 1.39605 * 120.27260 * 39.39650 * 16 14 13 18 18 C 1.37628 * 119.61633 * 180.10442 * 17 16 14 19 19 C 1.39075 * 120.75664 * 0.02562 * 18 17 16 20 20 C 1.37827 * 119.90301 * 359.71745 * 19 18 17 21 21 C 1.38646 * 119.82738 * 0.39966 * 20 19 18 22 22 C 1.50667 * 122.54347 * 180.75034 * 20 19 18 23 23 C 1.52720 * 110.60763 * 342.00371 * 22 20 19 24 24 C 1.53306 * 108.38937 * 51.14953 * 23 22 20 25 25 C 1.50688 * 117.61032 * 179.39398 * 19 18 17 26 26 C 1.47084 * 118.23818 * 51.45442 * 13 12 11 27 27 C 1.46900 * 110.99753 * 294.30737 * 10 9 7 28 28 H 0.96993 * 120.00445 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46398 * 60.00678 * 9 7 2 30 30 H 1.08997 * 109.47299 * 300.00905 * 9 7 2 31 31 H 1.08997 * 109.49461 * 67.29170 * 11 10 9 32 32 H 1.08999 * 109.51366 * 307.22736 * 11 10 9 33 33 H 1.09003 * 109.63279 * 186.45896 * 12 11 10 34 34 H 1.09004 * 109.62505 * 65.87798 * 12 11 10 35 35 H 1.07991 * 120.19066 * 0.08517 * 17 16 14 36 36 H 1.08001 * 119.62219 * 179.97438 * 18 17 16 37 37 H 1.07998 * 119.78182 * 179.73128 * 21 20 19 38 38 H 1.09005 * 109.24445 * 102.29137 * 22 20 19 39 39 H 1.08995 * 109.24689 * 221.70215 * 22 20 19 40 40 H 1.09004 * 109.67527 * 170.87466 * 23 22 20 41 41 H 1.09002 * 109.67503 * 291.42190 * 23 22 20 42 42 H 1.09003 * 109.68508 * 49.84136 * 24 23 22 43 43 H 1.09007 * 109.67986 * 170.35650 * 24 23 22 44 44 H 1.09003 * 109.24952 * 282.54261 * 25 19 18 45 45 H 1.08996 * 109.25155 * 41.96744 * 25 19 18 46 46 H 1.08996 * 109.62399 * 68.25203 * 26 13 12 47 47 H 1.09001 * 109.62841 * 188.83688 * 26 13 12 48 48 H 1.09004 * 109.49498 * 292.70467 * 27 10 9 49 49 H 1.09005 * 109.49750 * 52.78516 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5213 -4.8935 0.2374 12 6 2.5639 -6.0032 0.4102 13 7 3.4618 -5.9861 -0.7545 14 6 3.7121 -7.1122 -1.4515 15 8 3.1138 -8.1365 -1.1867 16 6 4.7146 -7.1015 -2.5381 17 6 5.9026 -6.3828 -2.3926 18 6 6.8254 -6.3804 -3.4136 19 6 6.5879 -7.0852 -4.5887 20 6 5.4193 -7.8010 -4.7363 21 6 4.4815 -7.8084 -3.7152 22 6 5.1085 -8.5985 -5.9763 23 6 5.9918 -8.1507 -7.1389 24 6 7.4509 -8.1584 -6.6686 25 6 7.6400 -7.0223 -5.6657 26 6 4.0840 -4.7088 -1.1350 27 6 2.9769 -3.6490 -1.2504 28 1 -0.4850 0.8399 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 0.8798 -5.1263 -0.6124 32 1 0.9158 -4.8195 1.1407 33 1 2.0633 -6.9695 0.4726 34 1 3.1395 -5.8265 1.3189 35 1 6.0961 -5.8317 -1.4843 36 1 7.7443 -5.8240 -3.3013 37 1 3.5642 -8.3660 -3.8334 38 1 5.2851 -9.6556 -5.7772 39 1 4.0618 -8.4539 -6.2435 40 1 5.8723 -8.8380 -7.9764 41 1 5.7105 -7.1436 -7.4467 42 1 7.6776 -9.1115 -6.1906 43 1 8.1124 -8.0094 -7.5221 44 1 7.5650 -6.0675 -6.1860 45 1 8.6264 -7.1060 -5.2097 46 1 4.8028 -4.4102 -0.3720 47 1 4.5888 -4.8190 -2.0947 48 1 2.3150 -3.8991 -2.0796 49 1 3.4273 -2.6720 -1.4261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:20 Heat of formation + Delta-G solvation = -13.245093 kcal Electronic energy + Delta-G solvation = -27947.741453 eV Core-core repulsion = 24259.739905 eV Total energy + Delta-G solvation = -3688.001549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72875 -39.47199 -37.49808 -36.16182 -34.41819 -32.82530 -32.48241 -31.30342 -30.14637 -29.19305 -28.18617 -25.74166 -24.35266 -23.47109 -23.17034 -22.40210 -21.95416 -20.85052 -19.75381 -18.77907 -17.11830 -16.43164 -16.21400 -16.12816 -15.69973 -15.04959 -14.89020 -14.73783 -14.49006 -14.40240 -14.16966 -13.93087 -13.80073 -13.55164 -13.42987 -13.13679 -12.85404 -12.75510 -12.45738 -12.26522 -11.91232 -11.74706 -11.57596 -11.30221 -11.23156 -11.07603 -10.95418 -10.84933 -10.76004 -10.68400 -10.61879 -10.52291 -9.92211 -9.70817 -9.28369 -8.95908 -8.70911 -8.52060 -8.42398 -7.34226 -6.07891 -4.09940 0.82858 1.18232 2.76515 3.08451 3.27325 3.35045 3.38850 3.61567 4.29444 4.34482 4.37409 4.53355 4.56261 4.71644 4.78900 4.80242 4.90309 5.02386 5.18604 5.21271 5.25623 5.27363 5.32497 5.39010 5.45891 5.50870 5.55266 5.58711 5.65079 5.66469 5.70781 5.73708 5.80172 5.84746 5.91294 5.97344 6.02114 6.18751 6.22499 6.28355 6.39789 6.43825 6.47387 6.66779 6.75744 7.20568 7.26901 7.52491 7.72916 7.99838 8.10481 8.23051 8.45880 8.97498 9.54666 11.03024 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.002796 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.738224 B =10013.580552 C =11149.962377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.601 5.601 14 C 0.558 3.442 15 O -0.547 6.547 16 C -0.125 4.125 17 C -0.089 4.089 18 C -0.127 4.127 19 C -0.058 4.058 20 C -0.085 4.085 21 C -0.066 4.066 22 C -0.081 4.081 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.083 4.083 26 C 0.101 3.899 27 C 0.051 3.949 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.025 0.975 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.897 -15.793 -11.796 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.004 4.004 13 N -0.333 5.333 14 C 0.347 3.653 15 O -0.426 6.426 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.145 4.145 19 C -0.058 4.058 20 C -0.085 4.085 21 C -0.085 4.085 22 C -0.117 4.117 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.120 4.120 26 C -0.022 4.022 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.043 0.957 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.731 -16.118 -11.245 24.561 hybrid contribution -0.324 1.032 -0.474 1.181 sum 14.407 -15.086 -11.719 23.926 Atomic orbital electron populations 1.69962 1.06106 1.26765 1.50846 1.25001 0.94862 0.99381 0.95375 0.86444 0.80044 0.83395 0.77541 1.19614 1.21117 1.20989 1.21171 0.93485 0.89840 1.50240 0.91747 1.19734 0.90018 0.87187 0.96243 1.62092 1.28073 1.02717 1.33197 1.22398 0.94946 0.90521 1.00981 1.21791 0.91760 0.99662 0.87213 1.48132 1.46592 1.08436 1.30143 1.18365 0.82092 0.83261 0.81610 1.90742 1.51155 1.32082 1.68624 1.19808 0.96032 1.01345 0.95643 1.21363 0.92934 0.97032 0.99449 1.21093 0.99754 1.00338 0.93284 1.19796 0.94686 0.96138 0.95228 1.19536 0.93835 0.99015 0.96077 1.21176 0.99155 0.96581 0.91577 1.20477 1.00381 0.98983 0.91906 1.21550 0.94889 1.02016 0.97322 1.21550 0.96807 0.98824 0.98603 1.20528 0.96933 0.99668 0.94867 1.22448 0.96396 0.82427 1.00883 1.22423 0.95079 0.98980 0.91383 0.92909 0.99108 0.94999 0.95508 0.89986 0.89310 0.90756 0.84903 0.85489 0.85386 0.90528 0.90592 0.91377 0.91454 0.91577 0.91390 0.90278 0.90573 0.90518 0.89332 0.95687 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.83 8.41 -34.44 -0.29 -14.12 16 8 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 9 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 10 N -0.54 -11.20 4.62 -235.47 -1.09 -12.28 16 11 C 0.04 0.74 5.62 -3.71 -0.02 0.72 16 12 C 0.12 1.88 6.61 -3.61 -0.02 1.86 16 13 N -0.60 -9.48 3.00 -173.29 -0.52 -10.00 16 14 C 0.56 9.06 7.35 -12.33 -0.09 8.97 16 15 O -0.55 -10.40 16.37 5.32 0.09 -10.32 16 16 C -0.13 -1.70 5.14 -105.07 -0.54 -2.24 16 17 C -0.09 -1.02 7.41 -39.29 -0.29 -1.31 16 18 C -0.13 -1.23 9.58 -39.49 -0.38 -1.61 16 19 C -0.06 -0.56 5.75 -104.47 -0.60 -1.16 16 20 C -0.08 -0.88 5.73 -104.64 -0.60 -1.48 16 21 C -0.07 -0.83 9.19 -39.05 -0.36 -1.19 16 22 C -0.08 -0.65 5.66 -28.04 -0.16 -0.81 16 23 C -0.12 -0.79 5.98 -26.72 -0.16 -0.95 16 24 C -0.12 -0.75 5.97 -26.72 -0.16 -0.90 16 25 C -0.08 -0.58 5.67 -28.03 -0.16 -0.74 16 26 C 0.10 1.49 5.03 -3.36 -0.02 1.47 16 27 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H -0.01 -0.25 8.13 -51.93 -0.42 -0.67 16 30 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.44 7.99 -51.93 -0.41 1.02 16 33 H 0.09 1.41 7.04 -51.93 -0.37 1.04 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.13 1.38 6.48 -52.49 -0.34 1.04 16 36 H 0.13 0.95 8.05 -52.49 -0.42 0.52 16 37 H 0.13 1.60 8.04 -52.49 -0.42 1.18 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 42 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 46 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 47 H 0.09 1.15 4.88 -51.93 -0.25 0.90 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.10 1.90 6.67 -51.93 -0.35 1.55 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -31.76 381.07 -12.02 -43.78 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.97 Total: -1.19 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.99 Total: -6.24 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.87 Total: -47.86 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.76 -12.02 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.533 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds