Wall clock time and date at job start Tue Mar 31 2020 15:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47094 * 2 1 4 4 C 1.52995 * 109.47312 * 239.99802 * 2 1 3 5 5 O 1.45204 * 109.47063 * 119.99878 * 2 1 3 6 6 C 1.34220 * 116.99978 * 60.00094 * 5 2 1 7 7 O 1.20831 * 120.00150 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00244 * 179.97438 * 6 5 2 9 9 H 1.09000 * 109.51114 * 54.89537 * 8 6 5 10 10 C 1.52880 * 109.62327 * 294.90959 * 8 6 5 11 11 N 1.47153 * 108.60750 * 187.89459 * 10 8 6 12 12 C 1.34776 * 120.98554 * 230.50521 * 11 10 8 13 13 O 1.21579 * 120.00229 * 184.70031 * 12 11 10 14 14 N 1.34784 * 119.99538 * 4.68722 * 12 11 10 15 15 C 1.46500 * 119.99782 * 174.91677 * 14 12 11 16 16 C 1.52993 * 109.46985 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.46884 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00301 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99842 * 179.72503 * 17 16 15 20 20 N 1.31515 * 120.00178 * 0.27724 * 19 17 16 21 21 Si 1.86793 * 119.99882 * 180.27703 * 19 17 16 22 22 H 1.48504 * 109.47393 * 59.99975 * 21 19 17 23 23 H 1.48505 * 109.47138 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47324 * 299.99817 * 21 19 17 25 25 C 1.47157 * 118.03364 * 50.22580 * 11 10 8 26 26 C 1.53296 * 108.38296 * 309.71430 * 25 11 10 27 27 O 1.42959 * 109.22292 * 52.30708 * 26 25 11 28 28 H 1.09005 * 109.47158 * 300.00096 * 1 2 3 29 29 H 1.08996 * 109.47343 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47224 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47023 * 300.00193 * 3 2 1 33 33 H 1.09005 * 109.47196 * 59.99927 * 3 2 1 34 34 H 1.09000 * 109.47284 * 300.00153 * 4 2 1 35 35 H 1.09009 * 109.47082 * 60.00344 * 4 2 1 36 36 H 1.08997 * 109.47286 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.61663 * 68.07481 * 10 8 6 38 38 H 1.08998 * 109.52366 * 307.65497 * 10 8 6 39 39 H 0.96999 * 119.99907 * 354.92452 * 14 12 11 40 40 H 1.09005 * 109.46859 * 60.00147 * 15 14 12 41 41 H 1.08997 * 109.47164 * 300.00577 * 15 14 12 42 42 H 1.09000 * 109.47515 * 60.00642 * 16 15 14 43 43 H 1.08997 * 109.47332 * 300.00096 * 16 15 14 44 44 H 0.96999 * 120.00503 * 179.97438 * 20 19 17 45 45 H 1.08993 * 109.68378 * 69.44371 * 25 11 10 46 46 H 1.09003 * 109.67704 * 189.99493 * 25 11 10 47 47 H 1.09004 * 109.50901 * 172.22995 * 26 25 11 48 48 H 1.08997 * 109.51892 * 292.37704 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5078 8 6 2.1183 -2.7437 2.5436 9 1 1.8330 -2.2113 3.4510 10 6 3.6390 -2.8951 2.5016 11 7 4.0495 -3.8110 3.5778 12 6 5.0296 -3.4741 4.4394 13 8 5.4134 -4.2770 5.2677 14 7 5.5844 -2.2470 4.3825 15 6 6.5699 -1.8414 5.3878 16 6 7.0379 -0.4143 5.0963 17 6 8.0521 0.0027 6.1301 18 1 8.3348 -0.6819 6.9161 19 6 8.6236 1.2560 6.0689 20 7 8.2796 2.0896 5.1115 21 14 9.8863 1.7701 7.3457 22 1 11.0462 0.8441 7.2957 23 1 10.3442 3.1536 7.0601 24 1 9.2722 1.7215 8.6969 25 6 3.3541 -5.1030 3.6892 26 6 1.8436 -4.8417 3.6767 27 8 1.5141 -4.0394 2.5403 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 4.1078 -1.9222 2.6488 38 1 3.9377 -3.3051 1.5369 39 1 5.3312 -1.6325 3.6760 40 1 7.4236 -2.5183 5.3535 41 1 6.1156 -1.8795 6.3778 42 1 6.1841 0.2624 5.1310 43 1 7.4920 -0.3759 4.1062 44 1 8.6813 2.9714 5.0686 45 1 3.6236 -5.7390 2.8461 46 1 3.6344 -5.5914 4.6225 47 1 1.3104 -5.7907 3.6193 48 1 1.5572 -4.3170 4.5882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612154795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:22 Heat of formation + Delta-G solvation = -152.874979 kcal Electronic energy + Delta-G solvation = -29241.092667 eV Core-core repulsion = 25103.894298 eV Total energy + Delta-G solvation = -4137.198369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33771 -40.31171 -38.66453 -37.07002 -35.04899 -34.86322 -34.37865 -32.91206 -31.95682 -29.79985 -28.06736 -27.68212 -27.64331 -25.40495 -24.82942 -23.13089 -21.88352 -21.03461 -19.92285 -19.72825 -18.34452 -17.57432 -17.01913 -16.82451 -16.40813 -16.31327 -15.76415 -15.56073 -15.25150 -15.04157 -14.55013 -14.50346 -14.24040 -14.02247 -13.86612 -13.68407 -13.30582 -12.88455 -12.72000 -12.51055 -12.33011 -12.28253 -12.24608 -12.16502 -11.98913 -11.69920 -11.47469 -11.20770 -11.10403 -11.03604 -10.66676 -10.66088 -10.54473 -10.34310 -10.20427 -9.97682 -9.58006 -9.30196 -8.85808 -8.49191 -8.29201 -6.10325 -4.13148 1.84868 1.97560 2.60747 3.30653 3.34538 3.37886 3.38605 3.58490 4.02319 4.21426 4.30524 4.41706 4.43071 4.47828 4.57057 4.62621 4.73953 4.89705 4.92918 5.18647 5.22630 5.26266 5.26805 5.32251 5.41096 5.45297 5.46646 5.55475 5.57400 5.66888 5.79319 5.96026 5.98454 6.12104 6.22921 6.34606 6.35403 6.57315 6.72808 6.90030 6.98271 7.52268 7.54162 7.60457 7.88085 8.15680 8.29130 8.80796 8.92846 9.51623 11.01220 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010292 B = 0.003249 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.958965 B = 8616.284363 C =11009.710316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.119 3.881 3 C -0.143 4.143 4 C -0.185 4.185 5 O -0.343 6.343 6 C 0.475 3.525 7 O -0.479 6.479 8 C 0.087 3.913 9 H 0.103 0.897 10 C 0.093 3.907 11 N -0.638 5.638 12 C 0.706 3.294 13 O -0.589 6.589 14 N -0.737 5.737 15 C 0.138 3.862 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.094 3.906 26 C 0.049 3.951 27 O -0.355 6.355 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.393 0.607 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.115 0.885 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.117 -6.538 -11.690 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.083 3.917 3 C -0.200 4.200 4 C -0.242 4.242 5 O -0.261 6.261 6 C 0.316 3.684 7 O -0.364 6.364 8 C 0.027 3.973 9 H 0.121 0.879 10 C -0.032 4.032 11 N -0.378 5.378 12 C 0.408 3.592 13 O -0.467 6.467 14 N -0.392 5.392 15 C 0.016 3.984 16 C -0.024 4.024 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.030 4.030 26 C -0.028 4.028 27 O -0.274 6.274 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.228 0.772 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.091 -7.116 -11.530 21.811 hybrid contribution 0.629 0.821 0.336 1.088 sum -16.462 -6.295 -11.194 20.879 Atomic orbital electron populations 1.22505 0.93956 1.04687 1.02960 1.22275 0.94416 0.92442 0.82528 1.21884 1.02842 0.92061 1.03243 1.22511 1.02088 1.02983 0.96603 1.86551 1.69647 1.24229 1.45650 1.22714 0.78074 0.81057 0.86597 1.90600 1.33969 1.69841 1.42002 1.21664 0.93808 0.86173 0.95704 0.87923 1.21992 0.92525 0.96190 0.92471 1.47285 1.39051 1.18940 1.32516 1.15902 0.79292 0.83101 0.80942 1.90891 1.65055 1.50567 1.40151 1.45737 1.46062 1.13853 1.33557 1.21649 0.88944 0.98685 0.89132 1.19321 0.96690 0.88507 0.97899 1.21002 1.23366 0.99654 1.12053 0.92266 1.24982 0.96881 0.96486 0.95838 1.69942 1.43336 1.07633 1.32351 0.86574 0.81652 0.77548 0.81765 1.20112 1.21250 1.20111 1.22155 0.91193 0.84931 1.04687 1.23186 0.95151 0.96012 0.88454 1.88014 1.70268 1.24277 1.44822 0.91811 0.90882 0.89884 0.90907 0.90230 0.91166 0.89885 0.90880 0.91594 0.87797 0.89980 0.77173 0.92554 0.92700 0.95928 0.95950 0.92794 0.90753 0.87449 0.86667 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.12 1.11 1.13 -90.62 -0.10 1.01 16 3 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 4 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 5 O -0.34 -3.77 9.88 -39.23 -0.39 -4.16 16 6 C 0.48 5.52 6.60 36.01 0.24 5.75 16 7 O -0.48 -6.41 12.01 -25.46 -0.31 -6.72 16 8 C 0.09 0.94 3.28 -27.94 -0.09 0.85 16 9 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 10 C 0.09 1.03 5.88 -3.75 -0.02 1.01 16 11 N -0.64 -8.44 3.03 -178.26 -0.54 -8.98 16 12 C 0.71 12.22 8.31 -86.91 -0.72 11.50 16 13 O -0.59 -12.25 15.84 5.30 0.08 -12.17 16 14 N -0.74 -12.90 5.47 -65.23 -0.36 -13.25 16 15 C 0.14 2.92 5.62 -4.05 -0.02 2.89 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.09 1.02 6.62 -3.53 -0.02 1.00 16 26 C 0.05 0.44 6.98 37.31 0.26 0.70 16 27 O -0.36 -4.06 9.92 -55.11 -0.55 -4.60 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.88 5.89 -51.93 -0.31 0.57 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.88 5.89 -51.93 -0.31 0.58 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.11 5.67 -51.93 -0.29 0.81 16 38 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.39 6.01 5.98 -40.82 -0.24 5.77 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.11 1.25 7.12 -51.93 -0.37 0.88 16 47 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -33.23 386.84 -8.42 -41.65 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.82 Total: 2.81 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.09 Total: 8.43 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.16 Total: -47.20 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.16 Total: -27.64 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.23 -8.42 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612154795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.228 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds