Wall clock time and date at job start Tue Mar 31 2020 15:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47094 * 2 1 4 4 C 1.52995 * 109.47312 * 239.99802 * 2 1 3 5 5 O 1.45204 * 109.47063 * 119.99878 * 2 1 3 6 6 C 1.34220 * 116.99978 * 60.00094 * 5 2 1 7 7 O 1.20831 * 120.00150 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00244 * 179.97438 * 6 5 2 9 9 H 1.09000 * 109.51114 * 54.89537 * 8 6 5 10 10 C 1.52880 * 109.62327 * 294.90959 * 8 6 5 11 11 N 1.47153 * 108.60750 * 187.89459 * 10 8 6 12 12 C 1.34776 * 120.98554 * 230.50521 * 11 10 8 13 13 O 1.21579 * 120.00229 * 184.70031 * 12 11 10 14 14 N 1.34784 * 119.99538 * 4.68722 * 12 11 10 15 15 C 1.46500 * 119.99782 * 174.91677 * 14 12 11 16 16 C 1.52993 * 109.46985 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.46884 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00301 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99842 * 179.72503 * 17 16 15 20 20 N 1.31515 * 120.00178 * 0.27724 * 19 17 16 21 21 Si 1.86793 * 119.99882 * 180.27703 * 19 17 16 22 22 H 1.48504 * 109.47393 * 59.99975 * 21 19 17 23 23 H 1.48505 * 109.47138 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47324 * 299.99817 * 21 19 17 25 25 C 1.47157 * 118.03364 * 50.22580 * 11 10 8 26 26 C 1.53296 * 108.38296 * 309.71430 * 25 11 10 27 27 O 1.42959 * 109.22292 * 52.30708 * 26 25 11 28 28 H 1.09005 * 109.47158 * 300.00096 * 1 2 3 29 29 H 1.08996 * 109.47343 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47224 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47023 * 300.00193 * 3 2 1 33 33 H 1.09005 * 109.47196 * 59.99927 * 3 2 1 34 34 H 1.09000 * 109.47284 * 300.00153 * 4 2 1 35 35 H 1.09009 * 109.47082 * 60.00344 * 4 2 1 36 36 H 1.08997 * 109.47286 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.61663 * 68.07481 * 10 8 6 38 38 H 1.08998 * 109.52366 * 307.65497 * 10 8 6 39 39 H 0.96999 * 119.99907 * 354.92452 * 14 12 11 40 40 H 1.09005 * 109.46859 * 60.00147 * 15 14 12 41 41 H 1.08997 * 109.47164 * 300.00577 * 15 14 12 42 42 H 1.09000 * 109.47515 * 60.00642 * 16 15 14 43 43 H 1.08997 * 109.47332 * 300.00096 * 16 15 14 44 44 H 0.96999 * 120.00503 * 179.97438 * 20 19 17 45 45 H 1.08993 * 109.68378 * 69.44371 * 25 11 10 46 46 H 1.09003 * 109.67704 * 189.99493 * 25 11 10 47 47 H 1.09004 * 109.50901 * 172.22995 * 26 25 11 48 48 H 1.08997 * 109.51892 * 292.37704 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5078 8 6 2.1183 -2.7437 2.5436 9 1 1.8330 -2.2113 3.4510 10 6 3.6390 -2.8951 2.5016 11 7 4.0495 -3.8110 3.5778 12 6 5.0296 -3.4741 4.4394 13 8 5.4134 -4.2770 5.2677 14 7 5.5844 -2.2470 4.3825 15 6 6.5699 -1.8414 5.3878 16 6 7.0379 -0.4143 5.0963 17 6 8.0521 0.0027 6.1301 18 1 8.3348 -0.6819 6.9161 19 6 8.6236 1.2560 6.0689 20 7 8.2796 2.0896 5.1115 21 14 9.8863 1.7701 7.3457 22 1 11.0462 0.8441 7.2957 23 1 10.3442 3.1536 7.0601 24 1 9.2722 1.7215 8.6969 25 6 3.3541 -5.1030 3.6892 26 6 1.8436 -4.8417 3.6767 27 8 1.5141 -4.0394 2.5403 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 4.1078 -1.9222 2.6488 38 1 3.9377 -3.3051 1.5369 39 1 5.3312 -1.6325 3.6760 40 1 7.4236 -2.5183 5.3535 41 1 6.1156 -1.8795 6.3778 42 1 6.1841 0.2624 5.1310 43 1 7.4920 -0.3759 4.1062 44 1 8.6813 2.9714 5.0686 45 1 3.6236 -5.7390 2.8461 46 1 3.6344 -5.5914 4.6225 47 1 1.3104 -5.7907 3.6193 48 1 1.5572 -4.3170 4.5882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612154795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:21 Heat of formation + Delta-G solvation = -173.662474 kcal Electronic energy + Delta-G solvation = -29241.994081 eV Core-core repulsion = 25103.894298 eV Total energy + Delta-G solvation = -4138.099783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24854 -41.44206 -39.75187 -37.96208 -36.69067 -35.99247 -35.19113 -34.80588 -32.91408 -31.52749 -29.20214 -28.37555 -28.29301 -26.64514 -26.34552 -24.21082 -22.96849 -22.65137 -20.98403 -20.74811 -19.53466 -18.55541 -18.42184 -17.91075 -17.69327 -17.24309 -16.96595 -16.71670 -16.51063 -16.15120 -15.90989 -15.57374 -15.43575 -15.22279 -15.02177 -14.58019 -14.38697 -14.28435 -14.12871 -13.40427 -13.38522 -13.19583 -13.05427 -12.94993 -12.91402 -12.88692 -12.80402 -12.52885 -12.46029 -12.23965 -12.20826 -11.95278 -11.68819 -11.53108 -11.43236 -11.41391 -11.21159 -10.99271 -10.57824 -10.20706 -9.60558 -8.21464 -6.31536 0.93478 1.16830 1.42027 1.45989 1.46428 1.54456 2.01129 2.41859 2.76323 2.82038 3.13520 3.31756 3.46284 3.69321 3.72457 3.78999 3.89403 3.94308 3.99944 4.15137 4.35987 4.41390 4.50199 4.53473 4.57499 4.61398 4.67397 4.77544 4.80202 4.83754 4.87911 4.88237 4.88824 5.13661 5.23126 5.26179 5.27002 5.29137 5.45116 5.50086 5.61137 5.70731 5.78039 5.83299 6.18834 6.66945 6.80464 6.84691 7.37504 7.43471 8.90119 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010292 B = 0.003249 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.958965 B = 8616.284363 C =11009.710316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 C -0.141 4.141 4 C -0.181 4.181 5 O -0.349 6.349 6 C 0.478 3.522 7 O -0.498 6.498 8 C 0.090 3.910 9 H 0.113 0.887 10 C 0.094 3.906 11 N -0.630 5.630 12 C 0.706 3.294 13 O -0.626 6.626 14 N -0.733 5.733 15 C 0.159 3.841 16 C 0.024 3.976 17 C -0.547 4.547 18 H 0.059 0.941 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.269 1.269 25 C 0.089 3.911 26 C 0.054 3.946 27 O -0.368 6.368 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.404 0.596 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.010 0.990 43 H 0.008 0.992 44 H 0.266 0.734 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.146 0.854 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.651 -6.356 -11.954 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.073 3.927 3 C -0.198 4.198 4 C -0.238 4.238 5 O -0.267 6.267 6 C 0.319 3.681 7 O -0.385 6.385 8 C 0.030 3.970 9 H 0.130 0.870 10 C -0.030 4.030 11 N -0.369 5.369 12 C 0.408 3.592 13 O -0.507 6.507 14 N -0.389 5.389 15 C 0.035 3.965 16 C -0.013 4.013 17 C -0.586 4.586 18 H 0.077 0.923 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.033 4.033 26 C -0.023 4.023 27 O -0.287 6.287 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.241 0.759 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.163 0.837 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.664 -6.939 -11.830 22.363 hybrid contribution 0.738 0.748 0.347 1.106 sum -16.927 -6.191 -11.483 21.370 Atomic orbital electron populations 1.22467 0.93469 1.03699 1.04050 1.22572 0.94948 0.93095 0.82107 1.21914 1.02449 0.91126 1.04286 1.22479 1.01979 1.02074 0.97296 1.86553 1.69645 1.23974 1.46534 1.22814 0.77643 0.81191 0.86415 1.90600 1.34911 1.70290 1.42685 1.21648 0.93233 0.86306 0.95806 0.87000 1.22091 0.92964 0.95969 0.92003 1.47270 1.37776 1.19993 1.31816 1.15941 0.79760 0.82375 0.81116 1.90865 1.66424 1.51496 1.41895 1.45439 1.45662 1.14541 1.33296 1.21133 0.89263 0.96418 0.89652 1.19120 0.95602 0.90115 0.96484 1.21427 1.24237 1.00119 1.12777 0.92260 1.25824 0.98794 0.96483 0.97814 1.70044 1.44454 1.08023 1.33894 0.85538 0.79143 0.77302 0.79297 1.19469 1.20643 1.19348 1.22382 0.92241 0.83837 1.04840 1.23326 0.93853 0.97097 0.87978 1.88016 1.70354 1.24449 1.45836 0.91687 0.88860 0.91808 0.91518 0.87978 0.91359 0.91731 0.88896 0.91697 0.87490 0.89068 0.75866 0.93696 0.93402 0.97128 0.97398 0.92561 0.89497 0.88238 0.83683 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 2 C 0.11 1.90 1.13 -10.79 -0.01 1.89 16 3 C -0.14 -2.00 8.85 71.98 0.64 -1.37 16 4 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 5 O -0.35 -7.45 9.88 -51.32 -0.51 -7.95 16 6 C 0.48 10.78 6.60 71.24 0.47 11.25 16 7 O -0.50 -13.13 12.01 28.36 0.34 -12.79 16 8 C 0.09 1.85 3.28 29.81 0.10 1.95 16 9 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 10 C 0.09 1.97 5.88 86.22 0.51 2.48 16 11 N -0.63 -16.03 3.03 -836.14 -2.53 -18.56 16 12 C 0.71 24.19 8.31 179.05 1.49 25.67 16 13 O -0.63 -26.08 15.84 -3.97 -0.06 -26.14 16 14 N -0.73 -25.58 5.47 -478.54 -2.62 -28.20 16 15 C 0.16 6.78 5.62 86.38 0.49 7.27 16 16 C 0.02 1.20 5.09 29.85 0.15 1.36 16 17 C -0.55 -30.11 9.11 25.60 0.23 -29.88 16 18 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.92 -53.29 13.29 21.45 0.28 -53.01 16 21 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.09 1.82 6.62 86.35 0.57 2.39 16 26 C 0.05 0.87 6.98 72.08 0.50 1.37 16 27 O -0.37 -7.78 9.92 -129.98 -1.29 -9.07 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.32 5.89 -2.39 -0.01 1.30 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 1.35 5.89 -2.39 -0.01 1.33 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 2.18 5.67 -2.39 -0.01 2.17 16 38 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 39 H 0.40 12.24 5.98 -92.71 -0.55 11.68 16 40 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.10 2.23 7.12 -2.39 -0.02 2.21 16 47 H 0.15 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.77 386.84 2.85 -67.93 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.40 Total: 22.16 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.80 Total: 20.61 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -4.86 Total: -99.76 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.52 Total: -55.96 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.77 2.85 -67.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612154795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.736 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds