Wall clock time and date at job start Tue Mar 31 2020 14:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.47061 * 2 1 4 4 C 1.52999 * 109.46767 * 239.99905 * 2 1 3 5 5 C 1.50701 * 109.47019 * 120.00161 * 2 1 3 6 6 C 1.38406 * 119.82428 * 239.72155 * 5 2 1 7 7 C 1.37882 * 120.17475 * 180.27599 * 6 5 2 8 8 C 1.39860 * 119.82274 * 0.02841 * 7 6 5 9 9 C 1.47173 * 120.17130 * 179.97438 * 8 7 6 10 10 C 1.34917 * 119.99983 * 0.02562 * 9 8 7 11 11 C 1.46232 * 120.00010 * 180.02562 * 10 9 8 12 12 O 1.21622 * 119.99920 * 355.27953 * 11 10 9 13 13 O 1.34906 * 120.00271 * 175.28348 * 11 10 9 14 14 C 1.42891 * 117.00129 * 185.16614 * 13 11 10 15 15 C 1.53007 * 109.47071 * 184.14327 * 14 13 11 16 16 C 1.50704 * 115.54895 * 64.76270 * 15 14 13 17 17 H 1.07996 * 120.00228 * 266.64424 * 16 15 14 18 18 C 1.37878 * 119.99709 * 86.64597 * 16 15 14 19 19 N 1.31516 * 119.99995 * 178.68175 * 18 16 15 20 20 Si 1.86807 * 120.00129 * 358.67830 * 18 16 15 21 21 H 1.48494 * 109.46787 * 90.87131 * 20 18 16 22 22 H 1.48500 * 109.46994 * 210.86969 * 20 18 16 23 23 H 1.48500 * 109.47219 * 330.86898 * 20 18 16 24 24 C 1.52997 * 117.50036 * 279.09325 * 15 14 13 25 25 C 1.52994 * 117.49962 * 210.43265 * 15 14 13 26 26 C 1.39853 * 119.65846 * 359.96714 * 8 7 6 27 27 C 1.37890 * 119.82164 * 0.02562 * 26 8 7 28 28 H 1.09001 * 109.46607 * 300.00271 * 1 2 3 29 29 H 1.08996 * 109.47085 * 59.99735 * 1 2 3 30 30 H 1.09000 * 109.47468 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46855 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47498 * 299.99599 * 3 2 1 33 33 H 1.09001 * 109.47631 * 60.00356 * 3 2 1 34 34 H 1.09000 * 109.47008 * 300.00137 * 4 2 1 35 35 H 1.08996 * 109.47025 * 60.00323 * 4 2 1 36 36 H 1.09004 * 109.46965 * 180.02562 * 4 2 1 37 37 H 1.07996 * 119.91353 * 0.28365 * 6 5 2 38 38 H 1.07997 * 120.08947 * 179.97438 * 7 6 5 39 39 H 1.07998 * 119.99839 * 180.02562 * 9 8 7 40 40 H 1.07999 * 119.99693 * 359.97438 * 10 9 8 41 41 H 1.09005 * 109.47370 * 304.13728 * 14 13 11 42 42 H 1.09000 * 109.47870 * 64.14366 * 14 13 11 43 43 H 0.97002 * 119.99990 * 179.97438 * 19 18 16 44 44 H 1.09005 * 117.49769 * 0.02562 * 24 15 14 45 45 H 1.09000 * 117.50148 * 145.01458 * 24 15 14 46 46 H 1.08998 * 117.50168 * 214.97510 * 25 15 14 47 47 H 1.09002 * 117.49865 * 359.97438 * 25 15 14 48 48 H 1.07992 * 120.08963 * 180.02562 * 26 8 7 49 49 H 1.08005 * 119.91233 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 6 2.8326 -0.0360 2.1362 7 6 3.3009 -0.6807 3.2615 8 6 2.9657 -2.0198 3.4861 9 6 3.4617 -2.7156 4.6844 10 6 4.2415 -2.0614 5.5699 11 6 4.7349 -2.7528 6.7603 12 8 4.3733 -3.8897 6.9967 13 8 5.5910 -2.1296 7.5962 14 6 6.1206 -2.9012 8.6760 15 6 6.9827 -2.0056 9.5680 16 6 6.2487 -0.8995 10.2817 17 1 6.1886 0.0830 9.8375 18 6 5.6541 -1.1421 11.5017 19 7 5.0358 -0.1704 12.1367 20 14 5.7264 -2.8510 12.2528 21 1 6.9287 -2.9611 13.1174 22 1 4.5074 -3.0855 13.0678 23 1 5.8006 -3.8648 11.1702 24 6 8.4153 -1.7228 9.1114 25 6 8.1596 -2.6572 10.2966 26 6 2.1565 -2.6943 2.5662 27 6 1.6961 -2.0356 1.4457 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 3.0909 0.9979 1.9612 38 1 3.9256 -0.1533 3.9672 39 1 3.2015 -3.7498 4.8548 40 1 4.5021 -1.0273 5.3992 41 1 5.3008 -3.3165 9.2622 42 1 6.7303 -3.7125 8.2782 43 1 4.6171 -0.3412 12.9949 44 1 8.7436 -2.1746 8.1753 45 1 8.8271 -0.7370 9.3274 46 1 8.4035 -2.2857 11.2919 47 1 8.3196 -3.7241 10.1408 48 1 1.8931 -3.7283 2.7329 49 1 1.0707 -2.5550 0.7346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744275470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:24 Heat of formation + Delta-G solvation = -48.429125 kcal Electronic energy + Delta-G solvation = -26544.720911 eV Core-core repulsion = 22822.900917 eV Total energy + Delta-G solvation = -3721.819994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49897 -40.82404 -38.93365 -37.76453 -37.08973 -34.51903 -34.27555 -32.15115 -30.46443 -28.94895 -28.23861 -28.07463 -27.46800 -25.49316 -23.49276 -23.34506 -22.85021 -21.10386 -20.64356 -19.96498 -19.05845 -18.57018 -17.52930 -17.46647 -17.25944 -16.68131 -16.01866 -15.90613 -15.56283 -15.21358 -15.14832 -14.86953 -14.64100 -14.60607 -14.29184 -14.16008 -13.96367 -13.85191 -13.36823 -13.11345 -13.06541 -13.00977 -12.77538 -12.67617 -12.52236 -12.29829 -12.18721 -12.06521 -11.91215 -11.79285 -11.70260 -11.57627 -11.45420 -11.34920 -11.22488 -10.93453 -10.67790 -10.39559 -9.90055 -9.19073 -8.32838 -6.39827 -0.62379 0.47749 0.81524 1.30461 1.34797 1.45112 1.79786 1.94916 2.32558 2.88163 3.00117 3.15707 3.56567 3.68839 3.72791 3.92811 3.98593 4.02507 4.11041 4.13122 4.20995 4.23445 4.30520 4.37961 4.38869 4.45254 4.51629 4.57338 4.78778 4.81118 4.81406 4.92138 4.92762 4.95070 5.00570 5.03014 5.06000 5.07348 5.15422 5.19279 5.21934 5.29122 5.38046 5.44184 5.46062 5.52393 5.57931 5.62461 5.64134 5.70389 6.00695 6.27608 6.67285 6.78431 7.28824 8.82894 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.002044 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.731064 B =13693.454641 C =13858.300817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.055 4.055 6 C -0.134 4.134 7 C -0.102 4.102 8 C -0.103 4.103 9 C 0.011 3.989 10 C -0.206 4.206 11 C 0.485 3.515 12 O -0.553 6.553 13 O -0.339 6.339 14 C 0.110 3.890 15 C -0.042 4.042 16 C -0.481 4.481 17 H 0.034 0.966 18 C 0.019 3.981 19 N -0.946 5.946 20 Si 0.934 3.066 21 H -0.256 1.256 22 H -0.297 1.297 23 H -0.243 1.243 24 C -0.153 4.153 25 C -0.179 4.179 26 C -0.090 4.090 27 C -0.125 4.125 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.266 0.734 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.144 0.856 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 -2.919 -29.003 29.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.204 4.204 4 C -0.194 4.194 5 C -0.055 4.055 6 C -0.151 4.151 7 C -0.120 4.120 8 C -0.103 4.103 9 C -0.007 4.007 10 C -0.225 4.225 11 C 0.334 3.666 12 O -0.447 6.447 13 O -0.254 6.254 14 C 0.036 3.964 15 C -0.043 4.043 16 C -0.519 4.519 17 H 0.052 0.948 18 C -0.178 4.178 19 N -0.586 5.586 20 Si 0.758 3.242 21 H -0.181 1.181 22 H -0.224 1.224 23 H -0.166 1.166 24 C -0.190 4.190 25 C -0.216 4.216 26 C -0.108 4.108 27 C -0.142 4.142 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.172 0.828 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.125 0.875 48 H 0.161 0.839 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.586 -3.173 -28.731 29.646 hybrid contribution -0.176 -0.415 1.321 1.396 sum -6.762 -3.588 -27.410 28.458 Atomic orbital electron populations 1.21899 0.92943 1.02487 1.02226 1.19613 0.96228 0.95347 0.92072 1.21996 1.01317 0.94594 1.02512 1.21889 1.00972 1.00502 0.96078 1.20324 0.95330 0.94097 0.95756 1.21364 0.98506 1.01230 0.94019 1.21690 0.98722 0.93732 0.97823 1.18973 1.01525 0.94624 0.95135 1.22538 0.88691 0.99382 0.90087 1.22206 1.04893 1.02402 0.92966 1.21968 0.76280 0.84464 0.83840 1.90785 1.58249 1.20652 1.75030 1.86230 1.56251 1.44875 1.38049 1.22449 0.96253 0.92418 0.85307 1.19245 0.87977 0.97913 0.99131 1.20351 1.33120 0.95399 1.02980 0.94776 1.25842 0.94045 1.00674 0.97267 1.70032 1.37761 1.34482 1.16301 0.85964 0.77763 0.81105 0.79355 1.18084 1.22391 1.16615 1.22876 0.98326 1.00094 0.97655 1.23074 1.02564 0.98635 0.97283 1.21593 0.95309 1.00618 0.93239 1.21162 1.00843 0.94420 0.97796 0.93208 0.91100 0.91970 0.92204 0.91251 0.92423 0.91973 0.91125 0.92993 0.83938 0.84944 0.84474 0.82782 0.93937 0.91344 0.92467 0.87640 0.89645 0.89613 0.87543 0.83855 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.29 71.99 0.60 -0.72 16 2 C -0.03 -0.35 0.85 -52.93 -0.05 -0.39 16 3 C -0.15 -1.45 7.13 71.98 0.51 -0.93 16 4 C -0.14 -1.23 8.28 71.98 0.60 -0.63 16 5 C -0.06 -0.81 4.77 -19.78 -0.09 -0.90 16 6 C -0.13 -2.24 8.95 22.23 0.20 -2.04 16 7 C -0.10 -2.02 9.41 22.58 0.21 -1.81 16 8 C -0.10 -2.14 5.87 -20.15 -0.12 -2.26 16 9 C 0.01 0.28 9.46 23.85 0.23 0.51 16 10 C -0.21 -6.13 9.54 23.58 0.22 -5.90 16 11 C 0.49 19.04 7.86 69.90 0.55 19.59 16 12 O -0.55 -23.69 15.93 19.44 0.31 -23.38 16 13 O -0.34 -15.01 10.04 -58.20 -0.58 -15.60 16 14 C 0.11 4.95 4.91 71.98 0.35 5.30 16 15 C -0.04 -1.97 1.05 -52.93 -0.06 -2.02 16 16 C -0.48 -28.05 9.35 25.60 0.24 -27.81 16 17 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 18 C 0.02 1.14 5.47 84.65 0.46 1.60 16 19 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 20 Si 0.93 45.29 24.89 68.60 1.71 47.00 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 23 H -0.24 -11.01 5.74 99.48 0.57 -10.44 16 24 C -0.15 -5.94 9.96 30.62 0.30 -5.64 16 25 C -0.18 -7.10 7.62 30.62 0.23 -6.87 16 26 C -0.09 -1.51 9.80 22.58 0.22 -1.29 16 27 C -0.12 -1.78 8.68 22.23 0.19 -1.59 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.54 7.37 -2.39 -0.02 0.52 16 31 H 0.06 0.60 7.50 -2.39 -0.02 0.58 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.61 7.51 -2.39 -0.02 0.59 16 34 H 0.06 0.50 7.38 -2.39 -0.02 0.49 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.14 1.95 5.87 -2.91 -0.02 1.94 16 38 H 0.13 2.52 6.17 -2.91 -0.02 2.50 16 39 H 0.14 3.33 7.52 -2.91 -0.02 3.30 16 40 H 0.15 4.04 6.08 -2.91 -0.02 4.02 16 41 H 0.04 2.08 6.44 -2.38 -0.02 2.06 16 42 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 43 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 44 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 45 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.09 3.56 7.29 -2.39 -0.02 3.54 16 47 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 48 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 49 H 0.15 1.42 7.07 -2.91 -0.02 1.40 16 Total: -1.00 -72.37 395.87 7.34 -65.03 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.79 Total: 20.58 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.81 Total: -33.80 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.30 Total: -59.83 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.27 Total: -38.97 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.71 Total: 47.00 kcal Total: -72.37 7.34 -65.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.604 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds