Wall clock time and date at job start Tue Mar 31 2020 15:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46933 * 120.62902 * 359.72542 * 8 6 5 10 10 C 1.53625 * 108.54354 * 126.36782 * 9 8 6 11 11 C 1.53042 * 109.24315 * 54.85108 * 10 9 8 12 12 C 1.53036 * 109.53740 * 298.51425 * 11 10 9 13 13 H 1.09002 * 109.52382 * 301.39390 * 12 11 10 14 14 O 1.42901 * 109.49535 * 181.31676 * 12 11 10 15 15 C 1.42903 * 114.00142 * 150.15962 * 14 12 11 16 16 C 1.50700 * 109.47243 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00110 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00081 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00216 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99682 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99925 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00377 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47306 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46904 * 120.00301 * 23 21 19 26 26 H 1.48503 * 109.47045 * 239.99994 * 23 21 19 27 27 C 1.46923 * 120.63273 * 179.97438 * 8 6 5 28 28 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 29 29 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 30 30 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 33 33 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 34 34 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 35 35 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 36 36 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.58222 * 246.19866 * 9 8 6 38 38 H 1.08997 * 109.58563 * 6.61805 * 9 8 6 39 39 H 1.09003 * 109.63112 * 294.86217 * 10 9 8 40 40 H 1.09002 * 109.45456 * 174.73848 * 10 9 8 41 41 H 1.08996 * 109.45604 * 178.48987 * 11 10 9 42 42 H 1.08999 * 109.44445 * 58.52789 * 11 10 9 43 43 H 1.09007 * 109.47332 * 300.00040 * 15 14 12 44 44 H 1.09002 * 109.47095 * 59.99689 * 15 14 12 45 45 H 0.97005 * 119.99684 * 359.97438 * 18 16 15 46 46 H 0.96998 * 120.00470 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.58345 * 353.37889 * 27 8 6 48 48 H 1.09003 * 109.58304 * 113.79679 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 2.9213 -2.0317 3.4309 10 6 2.2632 -2.2148 4.8069 11 6 2.0021 -3.7036 5.0470 12 6 1.0418 -4.2334 3.9798 13 1 0.1091 -3.6706 4.0172 14 8 0.7746 -5.6161 4.2228 15 6 -0.5185 -6.0431 3.7895 16 6 -0.6916 -7.5088 4.0940 17 8 0.2043 -8.1271 4.6291 18 7 -1.8421 -8.1327 3.7719 19 6 -1.9995 -9.4662 4.0485 20 1 -1.2017 -10.0167 4.5249 21 6 -3.1853 -10.1095 3.7158 22 7 -4.1562 -9.4396 3.1366 23 14 -3.3994 -11.9267 4.0921 24 1 -2.1694 -12.4459 4.7421 25 1 -4.5563 -12.1101 5.0049 26 1 -3.6431 -12.6683 2.8288 27 6 1.6811 -4.0715 2.5975 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 3.9044 -2.5026 3.4274 38 1 3.0223 -0.9689 3.2110 39 1 1.3192 -1.6705 4.8367 40 1 2.9283 -1.8325 5.5812 41 1 1.5596 -3.8400 6.0337 42 1 2.9434 -4.2505 4.9923 43 1 -1.2845 -5.4707 4.3127 44 1 -0.6138 -5.8809 2.7158 45 1 -2.5587 -7.6381 3.3443 46 1 -4.9839 -9.8887 2.9041 47 1 0.9633 -4.3549 1.8276 48 1 2.5649 -4.7056 2.5273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769160983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:50 Heat of formation + Delta-G solvation = -166.930153 kcal Electronic energy + Delta-G solvation = -28848.869682 eV Core-core repulsion = 24711.061835 eV Total energy + Delta-G solvation = -4137.807847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09629 -39.29729 -38.19298 -37.05904 -36.17251 -34.30219 -33.88996 -32.61391 -31.26976 -30.46962 -27.70403 -27.62510 -27.53289 -25.85601 -24.42465 -23.07123 -22.38600 -20.66179 -19.54071 -19.28760 -18.18310 -17.93576 -16.90918 -16.62122 -16.22999 -15.89243 -15.55945 -15.33019 -14.83417 -14.68645 -14.53758 -14.35309 -14.08876 -13.82594 -13.61666 -13.51497 -13.13992 -12.91975 -12.77522 -12.50918 -12.43176 -12.17158 -12.16426 -11.90899 -11.69657 -11.57176 -11.54918 -11.40712 -11.24317 -11.15293 -11.05628 -10.61211 -10.57469 -10.33603 -10.23226 -10.15956 -9.64737 -9.50316 -8.81907 -8.35750 -7.98558 -6.42264 -3.83488 1.89364 2.66746 3.16919 3.27402 3.34157 3.48042 3.72569 3.86844 4.22694 4.43285 4.47594 4.61172 4.62597 4.65614 4.70345 4.80506 5.02839 5.11583 5.16866 5.20311 5.23724 5.25440 5.34607 5.40407 5.41343 5.48496 5.50377 5.58241 5.59297 5.62387 5.68986 5.73154 5.77589 5.85270 6.01186 6.04438 6.04683 6.10505 6.20172 6.23853 6.27369 7.16462 7.37087 7.55316 8.04551 8.16429 8.59789 9.16812 9.50965 10.02411 10.75510 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.002389 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.084964 B =11715.157289 C =12845.008997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.653 3.347 7 O -0.565 6.565 8 N -0.591 5.591 9 C 0.109 3.891 10 C -0.131 4.131 11 C -0.118 4.118 12 C 0.075 3.925 13 H 0.064 0.936 14 O -0.345 6.345 15 C 0.051 3.949 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.560 5.560 19 C -0.299 4.299 20 H 0.105 0.895 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.104 3.896 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.393 0.607 46 H 0.272 0.728 47 H 0.099 0.901 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.540 24.270 -4.261 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.408 3.592 7 O -0.454 6.454 8 N -0.333 5.333 9 C -0.013 4.013 10 C -0.169 4.169 11 C -0.156 4.156 12 C 0.015 3.985 13 H 0.082 0.918 14 O -0.261 6.261 15 C -0.029 4.029 16 C 0.228 3.772 17 O -0.460 6.460 18 N -0.198 5.198 19 C -0.428 4.428 20 H 0.123 0.877 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.017 4.017 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.227 0.773 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.868 23.547 -4.179 26.697 hybrid contribution -0.931 -0.368 -0.345 1.059 sum 10.937 23.178 -4.524 26.025 Atomic orbital electron populations 1.22521 0.93913 1.05250 1.02435 1.22073 0.94452 0.91447 0.82180 1.21852 1.02157 0.92564 1.03102 1.22517 1.01463 1.03664 0.96440 1.86274 1.71612 1.23596 1.46359 1.17950 0.78745 0.80506 0.82040 1.90914 1.41136 1.70321 1.43017 1.46897 1.52733 1.12174 1.21529 1.21888 0.93340 0.98907 0.87189 1.21996 1.01762 0.96564 0.96613 1.21593 1.00254 0.94706 0.99001 1.22374 0.98215 0.84225 0.93680 0.91788 1.88088 1.33250 1.22951 1.81856 1.22293 0.85240 0.96098 0.99249 1.19504 0.84526 0.87527 0.85655 1.90545 1.41686 1.66915 1.46809 1.41763 1.13899 1.10442 1.53684 1.19760 1.01323 0.84562 1.37147 0.87731 1.25280 0.95194 1.00585 0.96881 1.69618 1.05919 1.37172 1.41474 0.85773 0.78469 0.81863 0.78084 1.19152 1.20721 1.20697 1.22199 1.01855 0.78780 0.98901 0.92196 0.91152 0.89255 0.91531 0.90163 0.91500 0.89275 0.91160 0.92243 0.90865 0.88929 0.91260 0.89804 0.90441 0.90501 0.91690 0.91626 0.77341 0.91843 0.88298 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.37 37.16 0.31 -1.41 16 2 C 0.14 1.24 1.13 -90.62 -0.10 1.14 16 3 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 4 C -0.18 -1.70 8.37 37.16 0.31 -1.38 16 5 O -0.36 -3.98 8.53 -40.34 -0.34 -4.33 16 6 C 0.65 8.42 7.74 54.06 0.42 8.84 16 7 O -0.56 -8.66 11.29 -19.28 -0.22 -8.88 16 8 N -0.59 -6.84 2.97 -178.31 -0.53 -7.37 16 9 C 0.11 0.92 6.48 -3.48 -0.02 0.90 16 10 C -0.13 -1.04 6.10 -26.39 -0.16 -1.20 16 11 C -0.12 -1.27 5.53 -26.69 -0.15 -1.42 16 12 C 0.07 1.00 2.76 -26.64 -0.07 0.93 16 13 H 0.06 0.83 7.79 -51.93 -0.40 0.43 16 14 O -0.34 -6.29 9.52 -55.14 -0.53 -6.81 16 15 C 0.05 0.97 6.23 36.01 0.22 1.19 16 16 C 0.44 10.98 7.86 -10.99 -0.09 10.90 16 17 O -0.58 -16.60 16.08 -14.36 -0.23 -16.83 16 18 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 20 H 0.10 3.11 7.16 -52.48 -0.38 2.73 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 23 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 C 0.10 1.36 6.04 -3.74 -0.02 1.34 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.70 6.92 -51.93 -0.36 0.34 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 44 H 0.07 1.11 8.02 -51.93 -0.42 0.70 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.10 1.45 6.88 -51.92 -0.36 1.09 16 48 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -33.92 386.91 -7.53 -41.45 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -7.90 Total: 8.18 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 0.74 Total: 11.17 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.14 Total: -45.98 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.32 Total: -36.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.92 -7.53 -41.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769160983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.477 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds