Wall clock time and date at job start Tue Mar 31 2020 15:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47748 * 2 1 4 4 N 1.46498 * 109.47030 * 240.00207 * 2 1 3 5 5 C 1.34785 * 120.00204 * 85.00300 * 4 2 1 6 6 O 1.21511 * 119.99729 * 359.97438 * 5 4 2 7 7 O 1.34637 * 120.00007 * 180.02562 * 5 4 2 8 8 C 1.45197 * 117.00027 * 179.97438 * 7 5 4 9 9 C 1.53008 * 109.46731 * 59.99857 * 8 7 5 10 10 C 1.52995 * 109.47399 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.47366 * 300.00342 * 8 7 5 12 12 C 1.53001 * 109.47237 * 120.00218 * 2 1 3 13 13 H 1.09000 * 109.50955 * 299.89644 * 12 2 1 14 14 C 1.52880 * 109.62320 * 179.90419 * 12 2 1 15 15 N 1.47153 * 108.60745 * 187.89681 * 14 12 2 16 16 C 1.34777 * 120.98594 * 230.50454 * 15 14 12 17 17 O 1.21683 * 119.99491 * 354.93201 * 16 15 14 18 18 C 1.46365 * 119.99991 * 174.93077 * 16 15 14 19 19 H 1.08001 * 120.00574 * 7.64416 * 18 16 15 20 20 C 1.40053 * 119.99668 * 187.64411 * 18 16 15 21 21 N 1.30680 * 119.99863 * 184.79201 * 20 18 16 22 22 Si 1.86796 * 120.00296 * 4.79007 * 20 18 16 23 23 H 1.48497 * 109.47550 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.46705 * 300.00072 * 22 20 18 25 25 H 1.48496 * 109.47261 * 59.99532 * 22 20 18 26 26 C 1.47157 * 118.03112 * 50.22386 * 15 14 12 27 27 C 1.53289 * 108.38903 * 309.71729 * 26 15 14 28 28 O 1.42964 * 109.22254 * 52.30443 * 27 26 15 29 29 H 1.09004 * 109.46800 * 300.00410 * 1 2 3 30 30 H 1.09006 * 109.47278 * 59.99521 * 1 2 3 31 31 H 1.08994 * 109.47820 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00236 * 265.00290 * 4 2 1 33 33 H 1.08992 * 109.46789 * 60.00105 * 9 8 7 34 34 H 1.09006 * 109.46855 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.46978 * 300.00070 * 9 8 7 36 36 H 1.09005 * 109.46897 * 60.00442 * 10 8 7 37 37 H 1.08997 * 109.47306 * 180.02562 * 10 8 7 38 38 H 1.08996 * 109.47031 * 300.00255 * 10 8 7 39 39 H 1.09001 * 109.47411 * 59.99276 * 11 8 7 40 40 H 1.08997 * 109.47247 * 179.97438 * 11 8 7 41 41 H 1.09007 * 109.46562 * 299.99928 * 11 8 7 42 42 H 1.08996 * 109.61953 * 68.07802 * 14 12 2 43 43 H 1.08992 * 109.52785 * 307.66024 * 14 12 2 44 44 H 0.96996 * 120.00021 * 354.92564 * 21 20 18 45 45 H 1.09001 * 109.67751 * 69.44592 * 26 15 14 46 46 H 1.09005 * 109.67994 * 189.99226 * 26 15 14 47 47 H 1.09003 * 109.51300 * 172.22695 * 27 26 15 48 48 H 1.09001 * 109.51412 * 292.38076 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8577 1.1607 -2.4118 7 8 2.5953 -0.6530 -3.4566 8 6 2.7083 0.1335 -4.6719 9 6 3.6806 1.2922 -4.4409 10 6 3.2304 -0.7515 -5.8055 11 6 1.3336 0.6890 -5.0497 12 6 2.0400 -0.7213 1.2492 13 1 1.6785 -0.2069 2.1396 14 6 3.5688 -0.7254 1.2515 15 7 4.0344 -1.5827 2.3532 16 6 4.9521 -1.1410 3.2359 17 8 5.4762 -0.0545 3.0761 18 6 5.3182 -1.9682 4.3865 19 1 4.9485 -2.9800 4.4638 20 6 6.1480 -1.4475 5.3874 21 7 6.5511 -2.2139 6.3661 22 14 6.6786 0.3424 5.3234 23 1 7.5480 0.6430 6.4892 24 1 7.4317 0.5907 4.0679 25 1 5.4785 1.2161 5.3618 26 6 3.4636 -2.9344 2.4663 27 6 1.9361 -2.8207 2.4079 28 8 1.5639 -2.0693 1.2500 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2489 -1.6318 -1.1527 33 1 4.6598 0.8965 -4.1718 34 1 3.7651 1.8829 -5.3532 35 1 3.3090 1.9228 -3.6332 36 1 2.5381 -1.5771 -5.9702 37 1 3.3157 -0.1609 -6.7177 38 1 4.2098 -1.1467 -5.5361 39 1 0.9620 1.3195 -4.2420 40 1 1.4186 1.2797 -5.9617 41 1 0.6410 -0.1365 -5.2141 42 1 3.9373 0.2902 1.3958 43 1 3.9335 -1.1173 0.3021 44 1 6.2175 -3.1216 6.4403 45 1 3.8176 -3.5525 1.6412 46 1 3.7626 -3.3809 3.4147 47 1 1.4987 -3.8175 2.3512 48 1 1.5742 -2.3140 3.3026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773345328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:59 Heat of formation + Delta-G solvation = -175.979272 kcal Electronic energy + Delta-G solvation = -29831.467119 eV Core-core repulsion = 25693.266873 eV Total energy + Delta-G solvation = -4138.200247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89856 -39.70996 -37.85089 -37.13642 -35.33352 -34.21424 -33.79405 -33.02081 -31.50575 -29.77714 -27.67153 -27.61265 -27.54236 -26.06227 -23.94134 -23.17052 -22.08780 -20.47411 -20.20974 -19.32150 -18.37724 -17.51176 -16.99459 -16.28383 -16.17446 -16.09902 -15.33035 -15.10405 -14.83457 -14.64642 -14.47608 -14.21792 -14.08722 -13.65258 -13.55449 -13.27834 -13.01099 -12.69625 -12.64689 -12.39220 -12.30165 -12.20975 -12.09105 -12.05998 -11.84989 -11.55314 -11.50798 -11.43499 -11.19710 -10.97019 -10.51899 -10.48848 -10.41879 -10.29230 -10.10070 -9.81205 -9.24215 -9.14621 -9.03697 -7.99341 -7.69705 -7.07761 -5.02363 2.10953 2.82099 3.50427 3.59691 3.67644 3.88278 4.09972 4.12763 4.22754 4.51170 4.52906 4.57243 4.71063 4.71950 4.90893 5.22865 5.24835 5.25667 5.27883 5.33213 5.33945 5.40970 5.43802 5.48034 5.54266 5.59135 5.63940 5.67751 5.73201 5.78352 5.82356 5.85438 6.05641 6.08408 6.12522 6.15321 6.21236 6.29296 6.35252 6.49526 7.04443 7.20706 7.42983 7.59891 7.65498 8.00360 8.36673 8.74005 8.82846 9.90785 10.25157 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003109 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.395329 B = 9005.024289 C = 9680.983993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.174 3.826 3 H 0.105 0.895 4 N -0.698 5.698 5 C 0.651 3.349 6 O -0.572 6.572 7 O -0.365 6.365 8 C 0.136 3.864 9 C -0.185 4.185 10 C -0.141 4.141 11 C -0.182 4.182 12 C 0.070 3.930 13 H 0.079 0.921 14 C 0.092 3.908 15 N -0.636 5.636 16 C 0.555 3.445 17 O -0.613 6.613 18 C -0.597 4.597 19 H 0.076 0.924 20 C 0.062 3.938 21 N -0.830 5.830 22 Si 1.126 2.874 23 H -0.320 1.320 24 H -0.279 1.279 25 H -0.291 1.291 26 C 0.086 3.914 27 C 0.050 3.950 28 O -0.381 6.381 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.278 0.722 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 0.033 -18.668 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.070 3.930 3 H 0.123 0.877 4 N -0.357 5.357 5 C 0.405 3.595 6 O -0.462 6.462 7 O -0.280 6.280 8 C 0.100 3.900 9 C -0.242 4.242 10 C -0.198 4.198 11 C -0.240 4.240 12 C 0.011 3.989 13 H 0.097 0.903 14 C -0.032 4.032 15 N -0.371 5.371 16 C 0.365 3.635 17 O -0.506 6.506 18 C -0.632 4.632 19 H 0.094 0.906 20 C -0.156 4.156 21 N -0.457 5.457 22 Si 0.958 3.042 23 H -0.252 1.252 24 H -0.206 1.206 25 H -0.218 1.218 26 C -0.038 4.038 27 C -0.027 4.027 28 O -0.300 6.300 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.278 2.106 -18.240 21.548 hybrid contribution -0.851 -1.894 -0.604 2.163 sum -12.129 0.212 -18.844 22.411 Atomic orbital electron populations 1.22118 0.94279 1.03028 1.02381 1.21015 0.94780 0.96498 0.80691 0.87749 1.44770 1.69291 1.14751 1.06899 1.18084 0.76588 0.83778 0.81098 1.90882 1.55588 1.14800 1.84881 1.86310 1.79525 1.43793 1.18389 1.22040 0.96348 0.90891 0.80767 1.22527 0.99058 0.98468 1.04115 1.21858 1.02109 0.99918 0.95920 1.22510 0.95832 1.02135 1.03482 1.22754 0.94794 0.84152 0.97217 0.90333 1.21790 0.92185 0.98228 0.91008 1.47848 1.44918 1.14095 1.30270 1.18517 0.77171 0.85845 0.81927 1.90173 1.57729 1.26002 1.76693 1.22102 1.34051 1.01233 1.05857 0.90571 1.27160 0.90411 1.07619 0.90447 1.70662 1.35247 1.09629 1.30170 0.82444 0.76672 0.71393 0.73643 1.25191 1.20606 1.21826 1.22161 0.92496 0.85680 1.03488 1.23025 0.95404 0.96162 0.88138 1.87816 1.75912 1.23211 1.43081 0.91385 0.92079 0.91368 0.75309 0.92057 0.91279 0.89247 0.91543 0.90239 0.91409 0.89309 0.91287 0.92294 0.88736 0.92585 0.91154 0.92705 0.87909 0.88355 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.34 37.15 0.35 -1.43 16 2 C 0.17 2.20 2.42 -67.93 -0.16 2.04 16 3 H 0.10 1.40 7.58 -51.92 -0.39 1.01 16 4 N -0.70 -8.85 4.25 -58.73 -0.25 -9.10 16 5 C 0.65 8.95 8.02 54.06 0.43 9.38 16 6 O -0.57 -8.73 11.54 -19.28 -0.22 -8.95 16 7 O -0.37 -4.64 9.94 -40.31 -0.40 -5.04 16 8 C 0.14 1.42 1.13 -90.62 -0.10 1.32 16 9 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 10 C -0.14 -1.10 8.85 37.16 0.33 -0.77 16 11 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 12 C 0.07 1.00 2.51 -26.79 -0.07 0.94 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.09 1.65 5.83 -3.75 -0.02 1.62 16 15 N -0.64 -13.32 3.03 -174.19 -0.53 -13.84 16 16 C 0.55 14.47 7.44 -12.99 -0.10 14.37 16 17 O -0.61 -17.44 11.58 5.20 0.06 -17.38 16 18 C -0.60 -16.22 9.28 -35.63 -0.33 -16.55 16 19 H 0.08 1.99 5.93 -52.49 -0.31 1.68 16 20 C 0.06 1.74 5.52 -17.36 -0.10 1.64 16 21 N -0.83 -23.37 13.65 55.55 0.76 -22.62 16 22 Si 1.13 29.43 26.03 -169.99 -4.42 25.01 16 23 H -0.32 -8.07 7.11 56.52 0.40 -7.67 16 24 H -0.28 -7.58 6.75 56.52 0.38 -7.20 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 C 0.09 1.46 6.56 -3.53 -0.02 1.44 16 27 C 0.05 0.69 6.98 37.31 0.26 0.95 16 28 O -0.38 -5.25 9.22 -35.23 -0.32 -5.57 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 32 H 0.41 4.99 8.12 -40.82 -0.33 4.66 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.87 7.12 -51.93 -0.37 1.50 16 43 H 0.06 0.96 7.25 -51.93 -0.38 0.58 16 44 H 0.28 7.46 8.72 -40.82 -0.36 7.10 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.88 5.41 -51.93 -0.28 1.60 16 47 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -32.02 376.24 -6.31 -38.33 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.74 Total: 1.64 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 1.09 Total: 11.85 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.02 Total: -45.55 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.89 Total: -36.95 kcal Atomic # 14 Polarization: 29.43 SS G_CDS: -4.42 Total: 25.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.02 -6.31 -38.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773345328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.645 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds