Wall clock time and date at job start Tue Mar 31 2020 15:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99510 * 2 1 4 4 O 1.20820 * 120.00598 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99847 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47198 * 180.02562 * 5 3 2 7 7 C 1.36939 * 120.00063 * 264.00965 * 6 5 3 8 8 H 1.08000 * 119.99806 * 196.15311 * 7 6 5 9 9 C 1.38809 * 120.00080 * 16.16098 * 7 6 5 10 10 N 1.31628 * 119.99656 * 22.17682 * 9 7 6 11 11 Si 1.86795 * 120.00390 * 202.17971 * 9 7 6 12 12 H 1.48496 * 109.47263 * 89.99536 * 11 9 7 13 13 H 1.48502 * 109.47463 * 209.99779 * 11 9 7 14 14 H 1.48507 * 109.46941 * 329.99691 * 11 9 7 15 15 C 1.46497 * 120.00030 * 84.01651 * 6 5 3 16 16 C 1.52993 * 109.47507 * 89.99936 * 15 6 5 17 17 C 1.53942 * 113.74683 * 86.26038 * 16 15 6 18 18 N 1.47920 * 86.00296 * 138.00595 * 17 16 15 19 19 C 1.34772 * 134.50396 * 155.35935 * 18 17 16 20 20 O 1.21516 * 120.00185 * 180.02562 * 19 18 17 21 21 O 1.34639 * 120.00163 * 0.02562 * 19 18 17 22 22 C 1.45200 * 117.00247 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47173 * 59.99605 * 22 21 19 24 24 C 1.52996 * 109.47136 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.46827 * 299.99722 * 22 21 19 26 26 C 1.47582 * 91.00543 * 335.36050 * 18 17 16 27 27 H 1.09005 * 109.46646 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47226 * 299.99544 * 1 2 3 29 29 H 1.08994 * 109.47254 * 60.00050 * 1 2 3 30 30 H 1.09003 * 109.47161 * 59.99894 * 5 3 2 31 31 H 1.09004 * 109.46766 * 300.00269 * 5 3 2 32 32 H 0.96999 * 119.99460 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.47153 * 329.99299 * 15 6 5 34 34 H 1.09006 * 109.47247 * 210.00000 * 15 6 5 35 35 H 1.09001 * 112.94624 * 314.66607 * 16 15 6 36 36 H 1.09004 * 113.76899 * 252.36375 * 17 16 15 37 37 H 1.09004 * 113.76785 * 23.75699 * 17 16 15 38 38 H 1.08999 * 109.47166 * 59.99963 * 23 22 21 39 39 H 1.08999 * 109.47069 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.47575 * 300.00016 * 23 22 21 41 41 H 1.08997 * 109.47310 * 59.99735 * 24 22 21 42 42 H 1.08999 * 109.47080 * 179.97438 * 24 22 21 43 43 H 1.08999 * 109.46689 * 299.99723 * 24 22 21 44 44 H 1.09004 * 109.47125 * 60.00471 * 25 22 21 45 45 H 1.08999 * 109.46987 * 180.02562 * 25 22 21 46 46 H 1.08997 * 109.47237 * 300.00030 * 25 22 21 47 47 H 1.09006 * 113.76917 * 270.33910 * 26 18 17 48 48 H 1.08999 * 113.77453 * 138.93989 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2939 3.3021 -1.1790 8 1 4.8410 4.2332 -1.1698 9 6 3.9071 2.7363 -2.3861 10 7 2.9052 1.8834 -2.4220 11 14 4.8084 3.1850 -3.9594 12 1 5.9402 2.2462 -4.1666 13 1 3.8730 3.0939 -5.1092 14 1 5.3288 4.5719 -3.8534 15 6 4.0629 3.4189 1.2624 16 6 5.4670 3.2695 1.8514 17 6 6.4755 4.3040 1.3199 18 7 6.9488 4.4072 2.7176 19 6 8.1091 4.7729 3.2975 20 8 8.2140 4.7596 4.5081 21 8 9.1521 5.1529 2.5356 22 6 10.3705 5.5329 3.2280 23 6 10.8760 4.3504 4.0569 24 6 11.4356 5.9316 2.2046 25 6 10.0833 6.7179 4.1523 26 6 5.6398 3.9488 3.2221 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.9557 0.7810 -0.8908 31 1 3.9563 0.7806 0.8892 32 1 2.6351 1.4877 -3.2655 33 1 3.3301 3.0209 1.9644 34 1 3.8558 4.4734 1.0800 35 1 5.8336 2.2434 1.8209 36 1 7.2130 3.8866 0.6343 37 1 6.0123 5.2164 0.9444 38 1 11.0806 3.5062 3.3984 39 1 11.7904 4.6359 4.5770 40 1 10.1171 4.0669 4.7861 41 1 11.0751 6.7741 1.6145 42 1 12.3500 6.2173 2.7244 43 1 11.6402 5.0877 1.5458 44 1 9.3243 6.4343 4.8816 45 1 10.9980 7.0035 4.6718 46 1 9.7231 7.5603 3.5619 47 1 4.9316 4.7571 3.4041 48 1 5.7104 3.2481 4.0540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779478822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:31 Heat of formation + Delta-G solvation = -100.831502 kcal Electronic energy + Delta-G solvation = -29214.348178 eV Core-core repulsion = 25079.406584 eV Total energy + Delta-G solvation = -4134.941595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.67883 -39.21691 -38.87561 -36.54238 -35.79298 -34.56363 -34.00853 -31.72324 -29.83393 -28.06937 -27.51519 -27.47127 -26.18423 -25.92263 -25.74367 -22.64406 -21.45730 -20.19237 -19.52521 -19.05032 -17.58775 -16.96798 -16.61655 -16.31342 -16.17718 -15.58266 -15.21622 -15.16724 -14.90825 -14.61659 -14.18021 -14.12524 -13.61129 -13.56094 -12.95314 -12.74058 -12.57217 -12.45770 -12.38343 -12.23652 -12.12931 -11.97667 -11.95254 -11.61278 -11.49629 -11.28281 -11.19905 -11.05448 -10.95070 -10.86739 -10.47784 -10.37089 -10.34914 -10.10597 -9.95839 -9.82455 -9.66086 -9.18987 -8.62561 -8.54667 -7.10799 -5.97088 -3.30560 2.14035 3.00732 3.32872 3.40478 3.41846 3.80311 3.88206 3.97915 4.40130 4.63045 4.66938 4.70529 4.80975 5.16089 5.21990 5.32488 5.34214 5.36968 5.41448 5.50842 5.56780 5.59428 5.64060 5.74334 5.75282 5.76464 5.82448 5.85352 5.90710 6.02198 6.02945 6.06026 6.18627 6.23444 6.26067 6.30467 6.40865 6.59160 6.64278 6.82030 6.99811 7.62798 7.71753 7.87348 8.12763 8.47682 8.95679 9.31732 9.65485 10.07739 11.13683 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.003034 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.146073 B = 9225.053272 C =10620.743220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.383 6.383 3 C 0.463 3.537 4 O -0.507 6.507 5 C 0.188 3.812 6 N -0.564 5.564 7 C -0.256 4.256 8 H 0.081 0.919 9 C 0.003 3.997 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.279 1.279 15 C 0.157 3.843 16 C -0.133 4.133 17 C 0.122 3.878 18 N -0.634 5.634 19 C 0.670 3.330 20 O -0.581 6.581 21 O -0.361 6.361 22 C 0.135 3.865 23 C -0.182 4.182 24 C -0.140 4.140 25 C -0.182 4.182 26 C 0.134 3.866 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.053 0.947 32 H 0.257 0.743 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.719 2.051 9.761 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.303 3.697 4 O -0.392 6.392 5 C 0.059 3.941 6 N -0.283 5.283 7 C -0.385 4.385 8 H 0.099 0.901 9 C -0.195 4.195 10 N -0.546 5.546 11 Si 0.737 3.263 12 H -0.213 1.213 13 H -0.220 1.220 14 H -0.204 1.204 15 C 0.029 3.971 16 C -0.155 4.155 17 C 0.001 3.999 18 N -0.376 5.376 19 C 0.426 3.574 20 O -0.472 6.472 21 O -0.276 6.276 22 C 0.098 3.902 23 C -0.240 4.240 24 C -0.197 4.197 25 C -0.239 4.239 26 C 0.012 3.988 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.104 0.896 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.727 2.406 10.055 14.195 hybrid contribution 0.045 0.405 -1.046 1.123 sum 9.772 2.811 9.009 13.585 Atomic orbital electron populations 1.22859 0.79805 1.01348 1.01261 1.86548 1.20995 1.36767 1.85706 1.25623 0.93628 0.80176 0.70232 1.90465 1.66737 1.36500 1.45484 1.20329 0.85304 0.86866 1.01637 1.43956 1.74863 1.06965 1.02506 1.19252 1.29210 1.07302 0.82739 0.90082 1.24838 0.96644 1.00014 0.98009 1.69878 1.24823 1.33939 1.25918 0.86206 0.79134 0.78161 0.82783 1.21312 1.21967 1.20431 1.20735 0.91217 0.97015 0.88118 1.23891 0.99366 0.99271 0.92925 1.23377 0.95161 0.98654 0.82727 1.49083 1.09261 1.67964 1.11269 1.17619 0.80385 0.76105 0.83260 1.90853 1.83293 1.60060 1.12962 1.86342 1.21516 1.79200 1.40516 1.22018 0.81042 0.94851 0.92330 1.22508 1.02649 0.97565 1.01231 1.21847 0.96599 1.02557 0.98739 1.22506 1.03649 0.97138 1.00642 1.23301 0.79794 0.97117 0.98543 0.90126 0.93605 0.92860 0.86815 0.92953 0.93227 0.93458 0.92333 0.88165 0.89793 0.89510 0.92189 0.91408 0.89397 0.91501 0.90347 0.91433 0.89424 0.91380 0.92279 0.89621 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.56 101.05 1.07 1.79 16 2 O -0.38 -7.98 10.57 -39.24 -0.41 -8.40 16 3 C 0.46 10.76 6.18 36.01 0.22 10.98 16 4 O -0.51 -13.33 15.89 -18.75 -0.30 -13.63 16 5 C 0.19 4.06 5.48 -5.19 -0.03 4.04 16 6 N -0.56 -12.35 2.03 -174.61 -0.35 -12.71 16 7 C -0.26 -6.25 9.66 -15.06 -0.15 -6.39 16 8 H 0.08 1.91 7.92 -52.49 -0.42 1.49 16 9 C 0.00 0.09 4.86 -17.43 -0.08 0.00 16 10 N -0.90 -24.41 9.31 55.49 0.52 -23.89 16 11 Si 0.91 20.54 29.61 -169.99 -5.03 15.51 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.16 2.77 5.48 -4.05 -0.02 2.75 16 16 C -0.13 -1.94 4.14 -89.70 -0.37 -2.31 16 17 C 0.12 1.82 8.45 -2.78 -0.02 1.79 16 18 N -0.63 -9.64 3.62 -183.86 -0.66 -10.31 16 19 C 0.67 10.92 8.22 54.05 0.44 11.37 16 20 O -0.58 -10.22 12.61 -19.28 -0.24 -10.46 16 21 O -0.36 -5.44 9.88 -40.32 -0.40 -5.84 16 22 C 0.13 1.61 1.13 -90.62 -0.10 1.51 16 23 C -0.18 -2.08 8.37 37.16 0.31 -1.76 16 24 C -0.14 -1.29 8.85 37.16 0.33 -0.96 16 25 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 26 C 0.13 1.78 8.40 -2.96 -0.02 1.75 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.11 2.68 6.35 -51.93 -0.33 2.35 16 31 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.06 1.06 7.77 -51.93 -0.40 0.66 16 35 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.27 7.92 -51.93 -0.41 0.86 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 48 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -31.55 393.14 -7.15 -38.70 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.06 Total: 2.31 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 1.88 Total: 22.80 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.50 Total: -46.91 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.35 Total: -38.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.55 -7.15 -38.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779478822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.134 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds