Wall clock time and date at job start Tue Mar 31 2020 15:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47020 * 239.99798 * 2 1 3 5 5 O 1.45204 * 109.46722 * 120.00363 * 2 1 3 6 6 C 1.34634 * 117.00524 * 59.99827 * 5 2 1 7 7 O 1.21515 * 119.99796 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00040 * 179.97438 * 6 5 2 9 9 C 1.47263 * 120.95916 * 0.02764 * 8 6 5 10 10 C 1.53300 * 108.32670 * 129.46524 * 9 8 6 11 11 O 1.42961 * 109.26618 * 52.28303 * 10 9 8 12 12 C 1.42966 * 114.16677 * 297.39866 * 11 10 9 13 13 H 1.08998 * 109.50874 * 302.65505 * 12 11 10 14 14 C 1.50702 * 109.51023 * 182.50369 * 12 11 10 15 15 O 1.21275 * 120.00419 * 354.99465 * 14 12 11 16 16 N 1.34780 * 119.99291 * 174.99537 * 14 12 11 17 17 C 1.46501 * 119.99538 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47303 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47432 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99832 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00130 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99816 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47104 * 59.99986 * 23 21 19 25 25 H 1.48503 * 109.47271 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47103 * 300.00052 * 23 21 19 27 27 C 1.47152 * 120.97950 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.47374 * 300.00259 * 1 2 3 29 29 H 1.08998 * 109.47330 * 59.99770 * 1 2 3 30 30 H 1.09001 * 109.47592 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47168 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47127 * 299.99857 * 3 2 1 33 33 H 1.09002 * 109.47341 * 60.00348 * 3 2 1 34 34 H 1.09003 * 109.47566 * 300.00152 * 4 2 1 35 35 H 1.08998 * 109.46716 * 60.00056 * 4 2 1 36 36 H 1.08995 * 109.47244 * 179.97438 * 4 2 1 37 37 H 1.08995 * 109.74687 * 9.74070 * 9 8 6 38 38 H 1.09004 * 109.67476 * 249.14721 * 9 8 6 39 39 H 1.09002 * 109.51290 * 292.33299 * 10 9 8 40 40 H 1.08997 * 109.51158 * 172.23397 * 10 9 8 41 41 H 0.96994 * 120.00162 * 0.02562 * 16 14 12 42 42 H 1.08999 * 109.47126 * 300.00438 * 17 16 14 43 43 H 1.08999 * 109.46996 * 60.00097 * 17 16 14 44 44 H 1.08999 * 109.47311 * 300.00232 * 18 17 16 45 45 H 1.09007 * 109.46879 * 59.99789 * 18 17 16 46 46 H 0.97001 * 119.99714 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.68168 * 110.83868 * 27 8 6 48 48 H 1.08993 * 109.68289 * 350.28257 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6521 -1.9724 1.3384 7 8 0.9515 -2.5098 0.5035 8 7 2.0679 -2.6657 2.4167 9 6 2.9178 -2.0356 3.4409 10 6 2.2912 -2.2979 4.8152 11 8 2.0498 -3.6991 4.9640 12 6 1.1194 -4.2361 4.0207 13 1 0.1730 -3.7009 4.0978 14 6 0.8970 -5.6983 4.3097 15 8 1.5444 -6.2511 5.1734 16 7 -0.0215 -6.3917 3.6081 17 6 -0.2373 -7.8133 3.8886 18 6 -1.3243 -8.3572 2.9594 19 6 -1.5460 -9.8197 3.2475 20 1 -0.9695 -10.3119 4.0168 21 6 -2.4854 -10.5291 2.5297 22 7 -3.1878 -9.9295 1.5933 23 14 -2.7606 -12.3418 2.8874 24 1 -3.1875 -12.5084 4.2999 25 1 -3.8156 -12.8697 1.9854 26 1 -1.4972 -13.0884 2.6607 27 6 1.6849 -4.0740 2.6055 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 2.9750 -0.9619 3.2624 38 1 3.9178 -2.4681 3.4049 39 1 1.3491 -1.7556 4.8953 40 1 2.9727 -1.9609 5.5963 41 1 -0.5390 -5.9496 2.9170 42 1 0.6900 -8.3614 3.7222 43 1 -0.5506 -7.9355 4.9254 44 1 -2.2518 -7.8092 3.1253 45 1 -1.0106 -8.2349 1.9226 46 1 -3.8485 -10.4287 1.0881 47 1 2.5605 -4.7118 2.4851 48 1 0.9260 -4.3494 1.8733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784697086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:16 Heat of formation + Delta-G solvation = -162.368921 kcal Electronic energy + Delta-G solvation = -28893.311310 eV Core-core repulsion = 24755.701253 eV Total energy + Delta-G solvation = -4137.610057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26966 -40.05198 -38.54039 -37.24072 -35.29142 -34.84135 -34.11962 -32.95671 -31.99693 -29.69174 -28.22723 -27.74944 -27.67460 -25.61784 -24.41717 -23.39563 -21.65151 -21.00766 -20.21407 -19.64777 -18.42978 -17.16637 -17.11770 -16.71644 -16.47051 -16.28432 -15.81427 -15.62822 -14.96387 -14.86885 -14.75455 -14.50220 -14.44508 -14.10169 -13.94414 -13.75246 -13.12741 -12.89229 -12.77016 -12.56274 -12.51593 -12.29246 -12.22614 -12.08852 -11.88552 -11.76412 -11.62781 -11.22450 -11.15028 -11.01806 -10.69431 -10.66134 -10.49378 -10.33862 -10.26241 -9.81901 -9.49048 -9.23711 -8.96863 -8.59337 -8.37801 -6.08714 -4.11893 1.69265 2.52336 2.83342 2.93923 3.31967 3.35892 3.38860 3.39320 3.98094 4.33495 4.37945 4.41954 4.42278 4.53487 4.56916 4.70276 4.73240 4.87314 5.03081 5.04122 5.13035 5.20974 5.24882 5.28223 5.36190 5.36616 5.38763 5.45435 5.54362 5.55249 5.64406 5.87460 5.99744 6.06080 6.13764 6.27852 6.32062 6.69374 6.73985 6.84621 6.97704 7.50974 7.60885 7.87975 7.90719 8.01476 8.26656 8.52610 8.93746 9.52926 11.02763 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.002518 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.713190 B =11115.594150 C =12669.332507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.656 3.344 7 O -0.559 6.559 8 N -0.599 5.599 9 C 0.076 3.924 10 C 0.046 3.954 11 O -0.347 6.347 12 C 0.061 3.939 13 H 0.089 0.911 14 C 0.515 3.485 15 O -0.523 6.523 16 N -0.717 5.717 17 C 0.123 3.877 18 C 0.012 3.988 19 C -0.523 4.523 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.106 3.894 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.399 0.601 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.089 0.911 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.283 26.098 -2.091 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.411 3.589 7 O -0.448 6.448 8 N -0.341 5.341 9 C -0.047 4.047 10 C -0.032 4.032 11 O -0.264 6.264 12 C -0.002 4.002 13 H 0.107 0.893 14 C 0.298 3.702 15 O -0.398 6.398 16 N -0.369 5.369 17 C 0.001 3.999 18 C -0.025 4.025 19 C -0.561 4.561 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.016 4.016 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.233 0.767 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.473 25.438 -1.775 27.962 hybrid contribution -0.609 -0.487 -0.479 0.915 sum 10.864 24.951 -2.254 27.307 Atomic orbital electron populations 1.22525 0.93799 1.05292 1.02544 1.22113 0.94515 0.91455 0.82036 1.21858 1.02201 0.92466 1.03175 1.22522 1.01514 1.03674 0.96431 1.86267 1.71558 1.23386 1.46560 1.17889 0.78661 0.80610 0.81776 1.90941 1.40903 1.70287 1.42627 1.46925 1.53359 1.11999 1.21826 1.22516 0.94589 0.99871 0.87707 1.23076 1.00889 0.82653 0.96584 1.88139 1.62622 1.22229 1.53456 1.22371 0.94111 0.94589 0.89113 0.89335 1.19745 0.80950 0.86833 0.82676 1.90715 1.47095 1.70086 1.31912 1.46294 1.39054 1.12959 1.38546 1.21791 1.00609 0.76753 1.00744 1.19331 0.92498 0.96322 0.94354 1.20999 1.21046 0.94264 1.19840 0.92257 1.24997 0.95653 0.98685 0.94931 1.69949 1.24073 1.36595 1.22611 0.86566 0.77917 0.84771 0.78241 1.20107 1.21257 1.20102 1.22234 1.02952 0.79770 0.96677 0.92173 0.91025 0.89219 0.91491 0.90057 0.91485 0.89238 0.91038 0.92198 0.87898 0.89977 0.92332 0.86846 0.76712 0.92267 0.92303 0.95865 0.95785 0.92762 0.89302 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 2 C 0.14 1.15 1.13 -90.62 -0.10 1.05 16 3 C -0.14 -0.79 8.85 37.16 0.33 -0.47 16 4 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 5 O -0.36 -3.68 8.58 -40.31 -0.35 -4.03 16 6 C 0.66 7.85 7.75 54.05 0.42 8.27 16 7 O -0.56 -7.96 11.35 -19.28 -0.22 -8.18 16 8 N -0.60 -6.50 3.02 -178.00 -0.54 -7.04 16 9 C 0.08 0.62 6.66 -3.47 -0.02 0.59 16 10 C 0.05 0.39 6.98 37.31 0.26 0.65 16 11 O -0.35 -4.60 9.92 -55.06 -0.55 -5.15 16 12 C 0.06 0.79 3.19 -27.75 -0.09 0.70 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 14 C 0.52 8.75 7.18 -10.98 -0.08 8.67 16 15 O -0.52 -11.05 16.51 -14.27 -0.24 -11.28 16 16 N -0.72 -12.25 5.52 -60.30 -0.33 -12.58 16 17 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 18 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 19 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 C 0.11 1.26 5.89 -3.55 -0.02 1.24 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 31 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.67 7.01 -51.93 -0.36 0.31 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.40 5.92 8.47 -40.82 -0.35 5.58 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.09 1.08 8.13 -51.93 -0.42 0.66 16 48 H 0.11 1.40 7.08 -51.93 -0.37 1.03 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -33.98 389.34 -7.89 -41.87 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.99 Total: 1.89 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 0.74 Total: 7.65 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.13 Total: -45.03 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.35 Total: -28.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.98 -7.89 -41.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784697086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.502 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds