Wall clock time and date at job start Tue Mar 31 2020 15:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47020 * 239.99798 * 2 1 3 5 5 O 1.45204 * 109.46722 * 120.00363 * 2 1 3 6 6 C 1.34634 * 117.00524 * 59.99827 * 5 2 1 7 7 O 1.21515 * 119.99796 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00040 * 179.97438 * 6 5 2 9 9 C 1.47263 * 120.95916 * 0.02764 * 8 6 5 10 10 C 1.53300 * 108.32670 * 129.46524 * 9 8 6 11 11 O 1.42961 * 109.26618 * 52.28303 * 10 9 8 12 12 C 1.42966 * 114.16677 * 297.39866 * 11 10 9 13 13 H 1.08998 * 109.50874 * 302.65505 * 12 11 10 14 14 C 1.50702 * 109.51023 * 182.50369 * 12 11 10 15 15 O 1.21275 * 120.00419 * 354.99465 * 14 12 11 16 16 N 1.34780 * 119.99291 * 174.99537 * 14 12 11 17 17 C 1.46501 * 119.99538 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47303 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47432 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99832 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00130 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99816 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47104 * 59.99986 * 23 21 19 25 25 H 1.48503 * 109.47271 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47103 * 300.00052 * 23 21 19 27 27 C 1.47152 * 120.97950 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.47374 * 300.00259 * 1 2 3 29 29 H 1.08998 * 109.47330 * 59.99770 * 1 2 3 30 30 H 1.09001 * 109.47592 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47168 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47127 * 299.99857 * 3 2 1 33 33 H 1.09002 * 109.47341 * 60.00348 * 3 2 1 34 34 H 1.09003 * 109.47566 * 300.00152 * 4 2 1 35 35 H 1.08998 * 109.46716 * 60.00056 * 4 2 1 36 36 H 1.08995 * 109.47244 * 179.97438 * 4 2 1 37 37 H 1.08995 * 109.74687 * 9.74070 * 9 8 6 38 38 H 1.09004 * 109.67476 * 249.14721 * 9 8 6 39 39 H 1.09002 * 109.51290 * 292.33299 * 10 9 8 40 40 H 1.08997 * 109.51158 * 172.23397 * 10 9 8 41 41 H 0.96994 * 120.00162 * 0.02562 * 16 14 12 42 42 H 1.08999 * 109.47126 * 300.00438 * 17 16 14 43 43 H 1.08999 * 109.46996 * 60.00097 * 17 16 14 44 44 H 1.08999 * 109.47311 * 300.00232 * 18 17 16 45 45 H 1.09007 * 109.46879 * 59.99789 * 18 17 16 46 46 H 0.97001 * 119.99714 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.68168 * 110.83868 * 27 8 6 48 48 H 1.08993 * 109.68289 * 350.28257 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6521 -1.9724 1.3384 7 8 0.9515 -2.5098 0.5035 8 7 2.0679 -2.6657 2.4167 9 6 2.9178 -2.0356 3.4409 10 6 2.2912 -2.2979 4.8152 11 8 2.0498 -3.6991 4.9640 12 6 1.1194 -4.2361 4.0207 13 1 0.1730 -3.7009 4.0978 14 6 0.8970 -5.6983 4.3097 15 8 1.5444 -6.2511 5.1734 16 7 -0.0215 -6.3917 3.6081 17 6 -0.2373 -7.8133 3.8886 18 6 -1.3243 -8.3572 2.9594 19 6 -1.5460 -9.8197 3.2475 20 1 -0.9695 -10.3119 4.0168 21 6 -2.4854 -10.5291 2.5297 22 7 -3.1878 -9.9295 1.5933 23 14 -2.7606 -12.3418 2.8874 24 1 -3.1875 -12.5084 4.2999 25 1 -3.8156 -12.8697 1.9854 26 1 -1.4972 -13.0884 2.6607 27 6 1.6849 -4.0740 2.6055 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 2.9750 -0.9619 3.2624 38 1 3.9178 -2.4681 3.4049 39 1 1.3491 -1.7556 4.8953 40 1 2.9727 -1.9609 5.5963 41 1 -0.5390 -5.9496 2.9170 42 1 0.6900 -8.3614 3.7222 43 1 -0.5506 -7.9355 4.9254 44 1 -2.2518 -7.8092 3.1253 45 1 -1.0106 -8.2349 1.9226 46 1 -3.8485 -10.4287 1.0881 47 1 2.5605 -4.7118 2.4851 48 1 0.9260 -4.3494 1.8733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784697086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:15 Heat of formation + Delta-G solvation = -185.401429 kcal Electronic energy + Delta-G solvation = -28894.310075 eV Core-core repulsion = 24755.701253 eV Total energy + Delta-G solvation = -4138.608822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14735 -41.17695 -39.70122 -38.10313 -36.66194 -36.09592 -34.96129 -34.75538 -33.11861 -31.36803 -29.22249 -28.35290 -28.27377 -27.07956 -25.86222 -24.26256 -22.97913 -22.39380 -21.53252 -20.44475 -19.34506 -18.62471 -18.18120 -18.00821 -17.59827 -17.36998 -16.89544 -16.50107 -16.44620 -16.27231 -15.87804 -15.67752 -15.53606 -15.21576 -14.78929 -14.63754 -14.49577 -14.29803 -14.00910 -13.52308 -13.24220 -13.20017 -13.11654 -12.94631 -12.86428 -12.84348 -12.71961 -12.54922 -12.50107 -12.35201 -12.23899 -11.94560 -11.66680 -11.48188 -11.41306 -11.37966 -11.12513 -10.86817 -10.60108 -10.11401 -9.85517 -8.23580 -6.34196 0.84612 1.42048 1.44426 1.45578 1.52251 1.64753 1.76305 2.41327 2.64462 2.93346 3.11252 3.39615 3.57120 3.71086 3.76788 3.80619 3.89988 3.95915 4.10181 4.16001 4.28726 4.45858 4.48514 4.50197 4.53441 4.63219 4.66858 4.78433 4.78639 4.83212 4.84972 4.87115 4.90636 5.04269 5.19108 5.20785 5.29899 5.35154 5.41771 5.46075 5.58032 5.77532 5.89242 6.13030 6.15527 6.49803 6.79086 7.12244 7.13870 7.35078 8.88045 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.002518 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.713190 B =11115.594150 C =12669.332507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.125 3.875 3 C -0.134 4.134 4 C -0.182 4.182 5 O -0.358 6.358 6 C 0.653 3.347 7 O -0.587 6.587 8 N -0.599 5.599 9 C 0.076 3.924 10 C 0.043 3.957 11 O -0.374 6.374 12 C 0.076 3.924 13 H 0.108 0.892 14 C 0.518 3.482 15 O -0.565 6.565 16 N -0.710 5.710 17 C 0.141 3.859 18 C 0.022 3.978 19 C -0.547 4.547 20 H 0.061 0.939 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.965 3.035 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.268 1.268 27 C 0.112 3.888 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.141 0.859 41 H 0.411 0.589 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.009 0.991 45 H 0.009 0.991 46 H 0.266 0.734 47 H 0.084 0.916 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.994 27.881 -1.846 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.089 3.911 3 C -0.191 4.191 4 C -0.239 4.239 5 O -0.273 6.273 6 C 0.408 3.592 7 O -0.478 6.478 8 N -0.340 5.340 9 C -0.045 4.045 10 C -0.034 4.034 11 O -0.292 6.292 12 C 0.014 3.986 13 H 0.126 0.874 14 C 0.303 3.697 15 O -0.443 6.443 16 N -0.362 5.362 17 C 0.018 3.982 18 C -0.016 4.016 19 C -0.585 4.585 20 H 0.079 0.921 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.011 4.011 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.159 0.841 41 H 0.247 0.753 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.198 27.271 -1.531 29.914 hybrid contribution -0.803 -0.947 -0.573 1.367 sum 11.395 26.325 -2.104 28.762 Atomic orbital electron populations 1.22486 0.94096 1.03591 1.03699 1.22444 0.94491 0.92817 0.81307 1.21873 1.02529 0.90216 1.04440 1.22486 1.01692 1.02123 0.97583 1.86281 1.71372 1.22272 1.47350 1.18041 0.78365 0.81132 0.81640 1.90939 1.42143 1.70983 1.43697 1.46964 1.53402 1.11461 1.22190 1.22707 0.94261 1.00929 0.86636 1.23383 1.02156 0.80244 0.97598 1.88106 1.62554 1.24955 1.53549 1.22125 0.95319 0.91560 0.89602 0.87431 1.20383 0.79575 0.88399 0.81385 1.90690 1.48514 1.71410 1.33719 1.46082 1.39532 1.11609 1.39021 1.21295 0.98848 0.78833 0.99217 1.19142 0.92887 0.95345 0.94186 1.21440 1.21254 0.95847 1.19977 0.92121 1.25882 0.95320 1.03388 0.94647 1.70061 1.24661 1.38416 1.23519 0.85500 0.78063 0.79132 0.78367 1.19269 1.20698 1.19323 1.22043 1.02583 0.80751 0.95752 0.91652 0.89249 0.92251 0.90971 0.88164 0.90853 0.92317 0.89195 0.91814 0.85837 0.89347 0.91312 0.84122 0.75299 0.93038 0.93082 0.97250 0.97255 0.92562 0.89787 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 2 C 0.13 1.94 1.13 -10.80 -0.01 1.93 16 3 C -0.13 -1.14 8.85 71.98 0.64 -0.50 16 4 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 5 O -0.36 -6.73 8.58 -55.43 -0.48 -7.20 16 6 C 0.65 15.21 7.75 129.79 1.01 16.22 16 7 O -0.59 -17.03 11.35 19.79 0.22 -16.80 16 8 N -0.60 -12.32 3.02 -947.49 -2.86 -15.18 16 9 C 0.08 1.06 6.66 86.33 0.57 1.64 16 10 C 0.04 0.62 6.98 72.08 0.50 1.12 16 11 O -0.37 -9.39 9.92 -130.02 -1.29 -10.68 16 12 C 0.08 1.93 3.19 29.94 0.10 2.02 16 13 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 14 C 0.52 17.64 7.18 87.66 0.63 18.27 16 15 O -0.57 -24.16 16.51 15.95 0.26 -23.90 16 16 N -0.71 -24.61 5.52 -463.06 -2.56 -27.16 16 17 C 0.14 6.05 5.61 86.38 0.48 6.53 16 18 C 0.02 1.10 5.09 29.85 0.15 1.25 16 19 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 20 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 21 C 0.01 0.36 5.46 84.65 0.46 0.82 16 22 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 23 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.11 2.62 5.89 86.34 0.51 3.13 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 1.37 5.88 -2.39 -0.01 1.35 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 1.24 7.01 -2.39 -0.02 1.23 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.41 12.36 8.47 -92.71 -0.79 11.58 16 42 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 48 H 0.11 2.69 7.08 -2.39 -0.02 2.68 16 Total: -1.00 -74.30 389.34 2.26 -72.04 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.17 Total: 20.23 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.48 Total: 17.33 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -5.14 Total: -96.91 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.28 Total: -58.58 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -74.30 2.26 -72.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784697086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.360 kcal (2) G-P(sol) polarization free energy of solvation -74.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds