Wall clock time and date at job start Tue Mar 31 2020 15:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.81101 * 2 1 4 4 C 1.53022 * 109.64412 * 239.47286 * 2 1 3 5 5 C 1.50063 * 110.14813 * 289.75389 * 4 2 1 6 6 C 1.29449 * 124.07226 * 342.87050 * 5 4 2 7 7 C 1.50062 * 124.07754 * 0.46395 * 6 5 4 8 8 C 1.53024 * 110.14673 * 342.87530 * 7 6 5 9 9 H 1.08994 * 109.81686 * 289.64482 * 8 7 6 10 10 C 1.52999 * 109.64022 * 169.12031 * 8 7 6 11 11 O 1.45197 * 109.47502 * 66.05268 * 10 8 7 12 12 C 1.34231 * 117.00427 * 180.02562 * 11 10 8 13 13 O 1.20825 * 119.99696 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00489 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47382 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.47157 * 54.99811 * 15 14 12 17 17 C 1.50696 * 109.47052 * 294.99798 * 15 14 12 18 18 H 1.07999 * 119.99970 * 119.77667 * 17 15 14 19 19 C 1.37881 * 120.00134 * 300.05193 * 17 15 14 20 20 N 1.31515 * 119.99958 * 7.41912 * 19 17 15 21 21 Si 1.86802 * 120.00082 * 187.42278 * 19 17 15 22 22 H 1.48504 * 109.47133 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46965 * 119.99707 * 21 19 17 24 24 H 1.48502 * 109.46879 * 239.99733 * 21 19 17 25 25 C 1.50701 * 109.47367 * 174.99718 * 15 14 12 26 26 C 1.38229 * 120.00117 * 209.61492 * 25 15 14 27 27 C 1.38239 * 119.99615 * 179.76565 * 26 25 15 28 28 C 1.38228 * 120.00336 * 0.50621 * 27 26 25 29 29 C 1.38242 * 119.99987 * 359.74758 * 28 27 26 30 30 C 1.38234 * 119.99813 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47202 * 299.47266 * 1 2 3 32 32 H 1.09008 * 109.46841 * 59.47298 * 1 2 3 33 33 H 1.08994 * 109.46868 * 179.46726 * 1 2 3 34 34 H 1.09005 * 109.35714 * 49.96162 * 4 2 1 35 35 H 1.08996 * 109.35887 * 169.54020 * 4 2 1 36 36 H 1.08000 * 117.96249 * 162.84665 * 5 4 2 37 37 H 1.08003 * 117.95803 * 180.44910 * 6 5 4 38 38 H 1.09004 * 109.36078 * 222.66428 * 7 6 5 39 39 H 1.08996 * 109.35652 * 103.08134 * 7 6 5 40 40 H 1.09003 * 109.46987 * 306.05016 * 10 8 7 41 41 H 1.09004 * 109.47502 * 186.05690 * 10 8 7 42 42 H 1.09004 * 109.47271 * 59.99394 * 14 12 11 43 43 H 1.09000 * 109.46893 * 299.99926 * 14 12 11 44 44 H 0.96994 * 120.00415 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.00211 * 0.02562 * 26 25 15 46 46 H 1.08002 * 119.99553 * 180.23141 * 27 26 25 47 47 H 1.08003 * 120.00579 * 179.72081 * 28 27 26 48 48 H 1.07996 * 120.00210 * 179.97438 * 29 28 27 49 49 H 1.07999 * 120.00114 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0444 -0.7320 -1.2414 5 6 1.7698 -2.2027 -1.1251 6 6 1.4812 -2.8010 -0.0140 7 6 1.3712 -2.1058 1.3113 8 6 2.0456 -0.7338 1.2444 9 1 3.1265 -0.8563 1.1760 10 6 1.6977 0.0719 2.4977 11 8 2.2887 -0.5640 3.6615 12 6 2.0758 0.0220 4.8502 13 8 1.4177 1.0331 4.9160 14 6 2.6585 -0.5805 6.1026 15 6 2.2699 0.2761 7.3092 16 1 1.1860 0.3855 7.3432 17 6 2.9084 1.6356 7.1866 18 1 2.2906 2.5204 7.1430 19 6 4.2811 1.7495 7.1242 20 7 5.0266 0.6706 7.0246 21 14 5.0819 3.4362 7.1814 22 1 4.0312 4.4794 7.2950 23 1 5.9862 3.5152 8.3567 24 1 5.8650 3.6547 5.9387 25 6 2.7473 -0.3909 8.5734 26 6 2.0556 -0.2063 9.7559 27 6 2.4908 -0.8221 10.9145 28 6 3.6236 -1.6139 10.8929 29 6 4.3184 -1.7943 9.7114 30 6 3.8800 -1.1832 8.5516 31 1 -0.3634 0.5056 0.8947 32 1 -0.3633 0.5220 -0.8853 33 1 -0.3633 -1.0276 -0.0096 34 1 1.5428 -0.3396 -2.1260 35 1 3.1183 -0.5714 -1.3365 36 1 1.8153 -2.7990 -2.0244 37 1 1.3086 -3.8667 -0.0428 38 1 1.8568 -2.7101 2.0777 39 1 0.3192 -1.9792 1.5667 40 1 0.6148 0.1108 2.6156 41 1 2.0889 1.0845 2.3990 42 1 3.7446 -0.6162 6.0173 43 1 2.2710 -1.5908 6.2339 44 1 5.9922 0.7507 6.9812 45 1 1.1728 0.4156 9.7737 46 1 1.9482 -0.6809 11.8376 47 1 3.9663 -2.0914 11.7990 48 1 5.2037 -2.4126 9.6945 49 1 4.4229 -1.3237 7.6286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796515876.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:43 Heat of formation + Delta-G solvation = -64.048334 kcal Electronic energy + Delta-G solvation = -28111.407546 eV Core-core repulsion = 24388.910252 eV Total energy + Delta-G solvation = -3722.497294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.95210 -39.07302 -38.20463 -35.75663 -34.22639 -32.56940 -31.44535 -31.13009 -29.86821 -28.72211 -27.64288 -26.26947 -25.35788 -23.03193 -22.39313 -21.50333 -20.58305 -20.37390 -19.21250 -17.33609 -16.80163 -16.51618 -16.26595 -15.88664 -15.50751 -15.07708 -14.87633 -14.39306 -14.27299 -13.88779 -13.71601 -13.56605 -13.24123 -13.04313 -12.83359 -12.45786 -12.27841 -12.11012 -11.91819 -11.87387 -11.66993 -11.51096 -11.40647 -11.33349 -10.96401 -10.79428 -10.62073 -10.52763 -10.44444 -10.24553 -10.14536 -9.98651 -9.86652 -9.44275 -9.35875 -9.06295 -9.05931 -8.50701 -7.83426 -7.48863 -6.05782 -4.14334 2.21347 2.45172 2.53730 3.27113 3.34327 3.35769 3.41220 3.48292 4.39224 4.53064 4.57695 4.78085 4.92891 5.09391 5.14984 5.17870 5.18915 5.28264 5.39445 5.46679 5.54033 5.72297 5.74532 5.78469 5.79667 5.85598 5.88184 5.89208 5.97253 5.99041 6.03164 6.10366 6.26008 6.32196 6.36398 6.43806 6.52135 6.58880 6.68863 6.73180 6.87642 7.01326 7.09324 7.23153 7.30597 7.45976 7.49632 7.67333 7.90686 8.04668 8.13318 8.27603 8.81129 8.90490 9.50219 10.89853 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.003097 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.474741 B = 9039.411501 C = 9983.471246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.084 4.084 5 C -0.162 4.162 6 C -0.148 4.148 7 C -0.087 4.087 8 C -0.081 4.081 9 H 0.083 0.917 10 C 0.071 3.929 11 O -0.369 6.369 12 C 0.469 3.531 13 O -0.502 6.502 14 C -0.113 4.113 15 C 0.085 3.915 16 H 0.039 0.961 17 C -0.481 4.481 18 H 0.063 0.937 19 C 0.062 3.938 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.285 1.285 25 C -0.031 4.031 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.152 4.152 29 C -0.143 4.143 30 C -0.074 4.074 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.145 0.855 43 H 0.063 0.937 44 H 0.263 0.737 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 -7.006 -11.034 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.121 4.121 5 C -0.180 4.180 6 C -0.166 4.166 7 C -0.124 4.124 8 C -0.099 4.099 9 H 0.101 0.899 10 C -0.003 4.003 11 O -0.288 6.288 12 C 0.313 3.687 13 O -0.388 6.388 14 C -0.151 4.151 15 C 0.066 3.934 16 H 0.057 0.943 17 C -0.518 4.518 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.212 1.212 25 C -0.031 4.031 26 C -0.147 4.147 27 C -0.160 4.160 28 C -0.170 4.170 29 C -0.161 4.161 30 C -0.093 4.093 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.162 0.838 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.776 -6.708 -11.064 13.792 hybrid contribution 0.652 1.107 0.082 1.287 sum -4.124 -5.602 -10.982 12.999 Atomic orbital electron populations 1.21957 0.94925 1.02361 1.01694 1.21148 0.96270 0.99199 0.93865 0.90605 1.20474 1.01107 0.92785 0.97703 1.21982 1.01944 0.96318 0.97732 1.22094 1.00424 0.99418 0.94644 1.20518 1.01132 0.95306 0.95419 1.21227 1.01366 0.94927 0.92380 0.89861 1.22908 0.97895 0.96228 0.83270 1.86532 1.71134 1.54871 1.16228 1.24263 0.77243 0.82842 0.84357 1.90566 1.37435 1.24104 1.86674 1.21861 1.06526 0.97578 0.89103 1.17698 0.95495 0.93608 0.86582 0.94282 1.21056 0.91250 0.91842 1.47679 0.91904 1.24905 0.97281 0.96783 0.94884 1.69569 1.05355 1.27262 1.50401 0.86515 0.79331 0.84673 0.77496 1.19754 1.20945 1.21165 1.20243 0.94380 0.92500 0.95991 1.20899 1.00555 1.00397 0.92877 1.20806 0.97775 1.00031 0.97406 1.20797 0.97227 1.01648 0.97353 1.21077 0.99725 1.01503 0.93779 1.21528 0.94755 0.94076 0.98931 0.92385 0.92831 0.91927 0.91064 0.90864 0.88300 0.88122 0.90147 0.90655 0.91823 0.91778 0.83819 0.91873 0.92658 0.87532 0.87983 0.88197 0.87936 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.32 37.16 0.31 -1.19 16 2 C -0.09 -0.89 2.71 -90.41 -0.25 -1.14 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.08 -0.76 5.56 -28.18 -0.16 -0.91 16 5 C -0.16 -1.51 9.40 -35.90 -0.34 -1.85 16 6 C -0.15 -1.49 9.14 -35.90 -0.33 -1.81 16 7 C -0.09 -1.00 4.62 -28.18 -0.13 -1.13 16 8 C -0.08 -1.00 2.28 -90.41 -0.21 -1.20 16 9 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 10 C 0.07 1.11 4.53 37.16 0.17 1.28 16 11 O -0.37 -6.98 10.01 -39.26 -0.39 -7.37 16 12 C 0.47 10.29 7.71 36.00 0.28 10.57 16 13 O -0.50 -12.21 14.73 -18.75 -0.28 -12.48 16 14 C -0.11 -2.48 4.29 -27.89 -0.12 -2.60 16 15 C 0.08 2.02 1.97 -92.93 -0.18 1.84 16 16 H 0.04 0.93 7.90 -51.93 -0.41 0.52 16 17 C -0.48 -12.74 7.27 -34.44 -0.25 -12.99 16 18 H 0.06 1.76 7.83 -52.49 -0.41 1.34 16 19 C 0.06 1.61 5.13 -17.82 -0.09 1.52 16 20 N -0.89 -22.50 7.89 55.43 0.44 -22.07 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 C -0.03 -0.69 4.65 -104.62 -0.49 -1.18 16 26 C -0.13 -2.71 9.70 -39.58 -0.38 -3.09 16 27 C -0.14 -2.69 10.05 -39.58 -0.40 -3.08 16 28 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 29 C -0.14 -2.81 10.05 -39.58 -0.40 -3.20 16 30 C -0.07 -1.62 7.51 -39.58 -0.30 -1.92 16 31 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.06 0.61 5.71 -51.93 -0.30 0.32 16 34 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.10 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 39 H 0.08 0.85 6.86 -51.93 -0.36 0.49 16 40 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 41 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 42 H 0.14 3.37 4.68 -51.93 -0.24 3.13 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 45 H 0.11 2.11 8.06 -52.48 -0.42 1.68 16 46 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 47 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 48 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.15 3.25 5.08 -52.49 -0.27 2.99 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -27.78 381.86 -10.90 -38.68 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.74 Total: 6.60 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -3.65 Total: -25.32 kcal Atomic # 7 Polarization: -22.50 SS G_CDS: 0.44 Total: -22.07 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.67 Total: -19.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.78 -10.90 -38.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796515876.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.368 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds