Wall clock time and date at job start Tue Mar 31 2020 15:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.81349 * 2 1 4 4 C 1.53017 * 109.64255 * 239.46952 * 2 1 3 5 5 C 1.50069 * 110.14931 * 289.75258 * 4 2 1 6 6 C 1.29446 * 124.07531 * 342.87136 * 5 4 2 7 7 C 1.50065 * 124.07597 * 0.46752 * 6 5 4 8 8 C 1.53029 * 110.14352 * 342.86702 * 7 6 5 9 9 H 1.09001 * 109.82033 * 289.64624 * 8 7 6 10 10 C 1.53004 * 109.63866 * 169.12033 * 8 7 6 11 11 O 1.45207 * 109.46996 * 66.05758 * 10 8 7 12 12 C 1.34221 * 116.99932 * 179.97438 * 11 10 8 13 13 O 1.20828 * 120.00024 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00149 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47384 * 180.02562 * 14 12 11 16 16 H 1.08998 * 109.47057 * 304.99711 * 15 14 12 17 17 C 1.50696 * 109.47264 * 65.00176 * 15 14 12 18 18 H 1.08000 * 120.00224 * 34.28797 * 17 15 14 19 19 C 1.37883 * 119.99929 * 214.28877 * 17 15 14 20 20 N 1.31516 * 119.99928 * 353.46242 * 19 17 15 21 21 Si 1.86794 * 119.99915 * 173.45617 * 19 17 15 22 22 H 1.48506 * 109.47075 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.47359 * 300.00072 * 21 19 17 24 24 H 1.48505 * 109.47287 * 60.00365 * 21 19 17 25 25 C 1.50702 * 109.46965 * 185.00214 * 15 14 12 26 26 C 1.38227 * 120.00100 * 298.68531 * 25 15 14 27 27 C 1.38237 * 120.00443 * 179.81284 * 26 25 15 28 28 C 1.38244 * 119.99548 * 0.41981 * 27 26 25 29 29 C 1.38232 * 119.99698 * 359.81176 * 28 27 26 30 30 C 1.38231 * 120.00384 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.46808 * 299.47290 * 1 2 3 32 32 H 1.09000 * 109.46995 * 59.47141 * 1 2 3 33 33 H 1.08996 * 109.47513 * 179.47084 * 1 2 3 34 34 H 1.09003 * 109.36032 * 49.95972 * 4 2 1 35 35 H 1.09000 * 109.36294 * 169.54667 * 4 2 1 36 36 H 1.08000 * 117.96561 * 162.84422 * 5 4 2 37 37 H 1.07999 * 117.96092 * 180.44121 * 6 5 4 38 38 H 1.08999 * 109.35958 * 222.66544 * 7 6 5 39 39 H 1.08999 * 109.36064 * 103.07572 * 7 6 5 40 40 H 1.08995 * 109.47388 * 306.06022 * 10 8 7 41 41 H 1.08996 * 109.46764 * 186.05274 * 10 8 7 42 42 H 1.09002 * 109.47004 * 60.00489 * 14 12 11 43 43 H 1.08998 * 109.46973 * 300.00599 * 14 12 11 44 44 H 0.96997 * 120.00080 * 180.02562 * 20 19 17 45 45 H 1.08000 * 119.99983 * 359.97438 * 26 25 15 46 46 H 1.07991 * 120.00480 * 180.20882 * 27 26 25 47 47 H 1.08001 * 119.99854 * 179.78865 * 28 27 26 48 48 H 1.07997 * 119.99829 * 179.97438 * 29 28 27 49 49 H 1.08000 * 120.00060 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0444 -0.7321 -1.2413 5 6 1.7697 -2.2028 -1.1250 6 6 1.4812 -2.8011 -0.0139 7 6 1.3711 -2.1059 1.3114 8 6 2.0456 -0.7339 1.2444 9 1 3.1266 -0.8564 1.1761 10 6 1.6977 0.0719 2.4977 11 8 2.2888 -0.5640 3.6616 12 6 2.0767 0.0226 4.8500 13 8 1.4185 1.0338 4.9158 14 6 2.6585 -0.5805 6.1026 15 6 2.2702 0.2763 7.3092 16 1 2.5811 1.3069 7.1381 17 6 0.7762 0.2274 7.5000 18 1 0.2318 -0.6770 7.2715 19 6 0.1040 1.3374 7.9664 20 7 0.7774 2.3940 8.3662 21 14 -1.7628 1.3403 8.0302 22 1 -2.2377 2.6415 8.5658 23 1 -2.3052 1.1410 6.6623 24 1 -2.2297 0.2411 8.9130 25 6 2.9520 -0.2558 8.5433 26 6 2.6902 -1.5417 8.9775 27 6 3.3185 -2.0312 10.1073 28 6 4.2020 -1.2315 10.8081 29 6 4.4601 0.0561 10.3766 30 6 3.8344 0.5444 9.2449 31 1 -0.3633 0.5056 0.8947 32 1 -0.3633 0.5220 -0.8852 33 1 -0.3634 -1.0276 -0.0095 34 1 1.5427 -0.3398 -2.1260 35 1 3.1183 -0.5716 -1.3365 36 1 1.8152 -2.7992 -2.0242 37 1 1.3085 -3.8668 -0.0426 38 1 1.8567 -2.7100 2.0778 39 1 0.3191 -1.9792 1.5668 40 1 0.6148 0.1108 2.6157 41 1 2.0891 1.0844 2.3989 42 1 3.7446 -0.6176 6.0174 43 1 2.2697 -1.5902 6.2341 44 1 0.3046 3.1747 8.6946 45 1 1.9968 -2.1651 8.4324 46 1 3.1166 -3.0371 10.4446 47 1 4.6903 -1.6128 11.6927 48 1 5.1500 0.6810 10.9242 49 1 4.0357 1.5506 8.9080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796515877.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:46 Heat of formation + Delta-G solvation = -70.165395 kcal Electronic energy + Delta-G solvation = -27822.430271 eV Core-core repulsion = 24099.667722 eV Total energy + Delta-G solvation = -3722.762549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03462 -39.13571 -38.30398 -35.83580 -34.01343 -32.62078 -31.60406 -31.39067 -30.01329 -29.04067 -27.68880 -26.11892 -25.27933 -23.12711 -22.47832 -21.64781 -20.65834 -20.46100 -19.23279 -17.38436 -16.86570 -16.56988 -16.46982 -15.89148 -15.64546 -15.38154 -14.56346 -14.44614 -14.26134 -14.11120 -13.89702 -13.65840 -13.29174 -13.05619 -12.69700 -12.56378 -12.42063 -12.27868 -11.98635 -11.96381 -11.79256 -11.67677 -11.63372 -11.36236 -10.90017 -10.77371 -10.66874 -10.62704 -10.52876 -10.26725 -10.19576 -10.09619 -9.94560 -9.54253 -9.39308 -9.09847 -9.07869 -8.40569 -8.04538 -7.63103 -5.98859 -3.99519 2.17630 2.28773 2.33172 3.19795 3.31916 3.36279 3.39959 3.43546 4.47788 4.48380 4.52543 4.71216 4.75091 5.04958 5.10228 5.13597 5.23524 5.35170 5.36379 5.43084 5.51638 5.64167 5.66669 5.68908 5.72259 5.74461 5.81584 5.84164 5.85173 5.93331 5.97580 6.05630 6.07424 6.13414 6.18955 6.27817 6.32232 6.40920 6.50911 6.54846 6.72680 6.83904 6.89356 7.00577 7.20592 7.31125 7.40518 7.50897 7.80682 7.92525 8.01135 8.30846 8.74506 9.00446 9.63170 11.10992 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.003114 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.896933 B = 8988.440002 C =10271.664401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.083 4.083 5 C -0.162 4.162 6 C -0.147 4.147 7 C -0.088 4.088 8 C -0.080 4.080 9 H 0.082 0.918 10 C 0.071 3.929 11 O -0.373 6.373 12 C 0.455 3.545 13 O -0.468 6.468 14 C -0.095 4.095 15 C 0.077 3.923 16 H 0.073 0.927 17 C -0.500 4.500 18 H 0.052 0.948 19 C 0.080 3.920 20 N -0.879 5.879 21 Si 0.887 3.113 22 H -0.288 1.288 23 H -0.277 1.277 24 H -0.278 1.278 25 C -0.022 4.022 26 C -0.116 4.116 27 C -0.131 4.131 28 C -0.154 4.154 29 C -0.128 4.128 30 C -0.116 4.116 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.261 0.739 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -7.810 -13.586 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.120 4.120 5 C -0.180 4.180 6 C -0.166 4.166 7 C -0.125 4.125 8 C -0.098 4.098 9 H 0.100 0.900 10 C -0.003 4.003 11 O -0.292 6.292 12 C 0.296 3.704 13 O -0.351 6.351 14 C -0.133 4.133 15 C 0.058 3.942 16 H 0.091 0.909 17 C -0.538 4.538 18 H 0.070 0.930 19 C -0.123 4.123 20 N -0.516 5.516 21 Si 0.715 3.285 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.023 4.023 26 C -0.134 4.134 27 C -0.150 4.150 28 C -0.172 4.172 29 C -0.146 4.146 30 C -0.134 4.134 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.131 0.869 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.638 -7.274 -13.517 16.035 hybrid contribution -1.284 0.127 0.144 1.298 sum 3.354 -7.147 -13.372 15.529 Atomic orbital electron populations 1.21967 0.94828 1.02457 1.01833 1.21148 0.96374 0.99133 0.93796 0.90600 1.20473 1.01026 0.92789 0.97741 1.21983 1.02009 0.96311 0.97725 1.22096 1.00353 0.99456 0.94649 1.20527 1.01341 0.95210 0.95389 1.21231 1.01179 0.95019 0.92378 0.89970 1.22948 0.98423 0.95985 0.82955 1.86498 1.71115 1.55367 1.16240 1.23959 0.78895 0.83447 0.84089 1.90716 1.34754 1.23672 1.85953 1.21611 0.99615 1.01542 0.90523 1.17901 0.95626 0.95917 0.84747 0.90871 1.20684 0.90088 0.98265 1.44726 0.92982 1.24811 0.97865 0.95425 0.94248 1.69899 1.35373 1.04766 1.41561 0.86747 0.86367 0.77137 0.78250 1.21336 1.20269 1.20382 1.20622 0.90958 0.92176 0.98504 1.20946 0.99328 0.96392 0.96737 1.20971 0.98364 0.99060 0.96556 1.20808 1.01015 0.95081 1.00340 1.20984 1.00622 0.95659 0.97359 1.21078 0.96994 0.99573 0.95753 0.92269 0.92780 0.91897 0.91025 0.90908 0.88285 0.88107 0.90193 0.90496 0.91434 0.91761 0.90496 0.89429 0.92955 0.86864 0.87607 0.87764 0.87590 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.32 37.16 0.31 -1.22 16 2 C -0.09 -0.84 2.71 -90.41 -0.25 -1.09 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.08 -0.70 5.56 -28.18 -0.16 -0.86 16 5 C -0.16 -1.45 9.40 -35.90 -0.34 -1.78 16 6 C -0.15 -1.43 9.15 -35.90 -0.33 -1.76 16 7 C -0.09 -0.98 4.62 -28.17 -0.13 -1.11 16 8 C -0.08 -0.92 2.28 -90.40 -0.21 -1.12 16 9 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 10 C 0.07 1.05 4.53 37.16 0.17 1.22 16 11 O -0.37 -6.46 10.01 -39.23 -0.39 -6.85 16 12 C 0.46 9.38 7.71 36.01 0.28 9.66 16 13 O -0.47 -11.49 14.73 -18.75 -0.28 -11.77 16 14 C -0.09 -1.87 5.03 -27.88 -0.14 -2.01 16 15 C 0.08 1.81 1.67 -92.93 -0.16 1.66 16 16 H 0.07 1.97 6.98 -51.93 -0.36 1.60 16 17 C -0.50 -13.26 6.46 -34.44 -0.22 -13.49 16 18 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 19 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 20 N -0.88 -25.43 12.87 55.43 0.71 -24.71 16 21 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 26 C -0.12 -2.32 8.86 -39.59 -0.35 -2.67 16 27 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 28 C -0.15 -2.67 10.05 -39.58 -0.40 -3.06 16 29 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 30 C -0.12 -2.43 9.67 -39.58 -0.38 -2.81 16 31 H 0.06 0.65 6.80 -51.93 -0.35 0.29 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.63 5.71 -51.93 -0.30 0.33 16 34 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 39 H 0.08 0.88 6.86 -51.93 -0.36 0.53 16 40 H 0.07 1.05 6.86 -51.93 -0.36 0.69 16 41 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.60 7.64 -51.93 -0.40 1.20 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.11 2.17 7.69 -52.49 -0.40 1.76 16 46 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 47 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 48 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 49 H 0.11 2.43 7.95 -52.49 -0.42 2.02 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -30.33 392.77 -10.73 -41.06 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.98 Total: 4.18 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -3.69 Total: -24.77 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.71 Total: -24.71 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.67 Total: -18.61 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.33 -10.73 -41.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796515877.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.108 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds