Wall clock time and date at job start Tue Mar 31 2020 15:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.80923 * 2 1 4 4 C 1.53038 * 109.63669 * 239.45660 * 2 1 3 5 5 C 1.50074 * 110.13593 * 190.85782 * 4 2 1 6 6 C 1.29437 * 124.07754 * 17.16889 * 5 4 2 7 7 C 1.50076 * 124.07606 * 359.50599 * 6 5 4 8 8 C 1.53016 * 110.14436 * 17.13308 * 7 6 5 9 9 H 1.09004 * 109.64951 * 70.46085 * 8 7 6 10 10 C 1.53005 * 109.64192 * 190.87844 * 8 7 6 11 11 O 1.45199 * 109.47069 * 295.00060 * 10 8 7 12 12 C 1.34226 * 116.99905 * 179.97438 * 11 10 8 13 13 O 1.20826 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00197 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.47668 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47032 * 305.99291 * 15 14 12 17 17 C 1.50707 * 109.46778 * 65.98539 * 15 14 12 18 18 H 1.08000 * 119.99645 * 27.68406 * 17 15 14 19 19 C 1.37873 * 119.99877 * 207.67697 * 17 15 14 20 20 N 1.31515 * 120.00534 * 353.65504 * 19 17 15 21 21 Si 1.86809 * 119.99657 * 173.65780 * 19 17 15 22 22 H 1.48499 * 109.46976 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46772 * 240.00032 * 21 19 17 24 24 H 1.48495 * 109.47059 * 120.00268 * 21 19 17 25 25 C 1.50703 * 109.47623 * 185.98653 * 15 14 12 26 26 C 1.38235 * 119.99680 * 295.91621 * 25 15 14 27 27 C 1.38234 * 119.99300 * 179.78448 * 26 25 15 28 28 C 1.38239 * 120.00323 * 0.44550 * 27 26 25 29 29 C 1.38231 * 119.99979 * 359.80724 * 28 27 26 30 30 C 1.38234 * 119.99827 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47597 * 299.47323 * 1 2 3 32 32 H 1.09003 * 109.47423 * 59.46981 * 1 2 3 33 33 H 1.08998 * 109.47414 * 179.47236 * 1 2 3 34 34 H 1.08995 * 109.35050 * 70.66469 * 4 2 1 35 35 H 1.08993 * 109.37082 * 311.06810 * 4 2 1 36 36 H 1.08003 * 117.96090 * 197.13949 * 5 4 2 37 37 H 1.08001 * 117.96666 * 179.52315 * 6 5 4 38 38 H 1.08994 * 109.35779 * 256.92036 * 7 6 5 39 39 H 1.09004 * 109.35776 * 137.33643 * 7 6 5 40 40 H 1.08994 * 109.47243 * 174.99743 * 10 8 7 41 41 H 1.09002 * 109.46482 * 54.99710 * 10 8 7 42 42 H 1.09008 * 109.46751 * 60.00263 * 14 12 11 43 43 H 1.08999 * 109.47657 * 300.00910 * 14 12 11 44 44 H 0.97001 * 119.99479 * 2.90990 * 20 19 17 45 45 H 1.07997 * 120.00364 * 359.97438 * 26 25 15 46 46 H 1.08004 * 119.99848 * 180.27191 * 27 26 25 47 47 H 1.08006 * 119.99940 * 179.83499 * 28 27 26 48 48 H 1.07992 * 120.00403 * 180.02562 * 29 28 27 49 49 H 1.08001 * 120.00302 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8993 1.0255 0.0000 4 6 2.0442 -0.7325 -1.2414 5 6 3.5212 -0.9720 -1.1251 6 6 4.1817 -0.9034 -0.0141 7 6 3.5649 -0.5643 1.3114 8 6 2.0456 -0.7338 1.2444 9 1 1.7976 -1.7931 1.1780 10 6 1.4054 -0.1334 2.4977 11 8 1.8233 -0.8899 3.6644 12 6 1.3466 -0.4891 4.8534 13 8 0.6044 0.4622 4.9171 14 6 1.7363 -1.2261 6.1088 15 6 1.0608 -0.5712 7.3153 16 1 1.2951 0.4932 7.3294 17 6 -0.4317 -0.7557 7.2168 18 1 -0.8369 -1.6069 6.6899 19 6 -1.2797 0.1621 7.7994 20 7 -0.7905 1.1283 8.5457 21 14 -3.1236 0.0332 7.5289 22 1 -3.4155 -1.1325 6.6565 23 1 -3.6162 1.2738 6.8780 24 1 -3.8045 -0.1436 8.8366 25 6 1.5638 -1.2132 8.5825 26 6 1.3064 -2.5487 8.8300 27 6 1.7716 -3.1386 9.9903 28 6 2.4863 -2.3909 10.9075 29 6 2.7391 -1.0541 10.6624 30 6 2.2778 -0.4653 9.5000 31 1 -0.3634 0.5056 0.8947 32 1 -0.3634 0.5220 -0.8852 33 1 -0.3634 -1.0276 -0.0095 34 1 1.8449 -0.1278 -2.1260 35 1 1.5295 -1.6885 -1.3362 36 1 4.0667 -1.2174 -2.0243 37 1 5.2429 -1.1023 -0.0426 38 1 3.8024 0.4683 1.5668 39 1 3.9688 -1.2259 2.0777 40 1 0.3201 -0.1755 2.4070 41 1 1.7211 0.9043 2.6053 42 1 2.8186 -1.1866 6.2322 43 1 1.4169 -2.2655 6.0339 44 1 0.1692 1.2204 8.6519 45 1 0.7446 -3.1318 8.1154 46 1 1.5744 -4.1831 10.1817 47 1 2.8474 -2.8512 11.8153 48 1 3.2977 -0.4700 11.3787 49 1 2.4756 0.5790 9.3083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796515879.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:53 Heat of formation + Delta-G solvation = -75.549134 kcal Electronic energy + Delta-G solvation = -27793.499336 eV Core-core repulsion = 24070.503330 eV Total energy + Delta-G solvation = -3722.996006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.04475 -39.04792 -38.42984 -35.93673 -34.29747 -33.19237 -31.77641 -31.36183 -30.13655 -29.15544 -27.06363 -26.21864 -25.03847 -23.13439 -22.36499 -21.71360 -20.64711 -20.56350 -19.54862 -18.26391 -17.09410 -16.82005 -16.20191 -15.95832 -15.76952 -15.36216 -14.62044 -14.44595 -14.17153 -14.03861 -13.86027 -13.70120 -13.33236 -12.99540 -12.84516 -12.56803 -12.44758 -12.41269 -12.26026 -12.15958 -11.98655 -11.79773 -11.59256 -11.49999 -11.03914 -10.75897 -10.74123 -10.52842 -10.46509 -10.31682 -10.19802 -10.09377 -9.95220 -9.76074 -9.55285 -9.14505 -8.71353 -8.35176 -8.16055 -7.68121 -6.30638 -3.99507 2.12870 2.16861 2.21100 3.07972 3.23040 3.47055 3.52600 3.63345 4.44785 4.50258 4.55809 4.61242 4.64434 4.88787 5.06784 5.11651 5.28544 5.31116 5.36016 5.42818 5.48084 5.55605 5.58045 5.60685 5.62515 5.65589 5.73564 5.76513 5.81353 5.87569 5.92794 5.94503 5.99316 6.02863 6.09388 6.13839 6.28155 6.29488 6.37283 6.49586 6.57981 6.75099 6.78736 6.87450 7.09240 7.12919 7.20177 7.34644 7.66107 7.82231 8.13436 8.44496 8.62352 8.90348 9.70386 11.09888 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.003146 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.791417 B = 8898.004284 C =10500.076210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.083 4.083 5 C -0.164 4.164 6 C -0.149 4.149 7 C -0.087 4.087 8 C -0.080 4.080 9 H 0.083 0.917 10 C 0.068 3.932 11 O -0.372 6.372 12 C 0.457 3.543 13 O -0.472 6.472 14 C -0.089 4.089 15 C 0.069 3.931 16 H 0.051 0.949 17 C -0.575 4.575 18 H 0.048 0.952 19 C 0.033 3.967 20 N -0.904 5.904 21 Si 1.069 2.931 22 H -0.291 1.291 23 H -0.287 1.287 24 H -0.289 1.289 25 C -0.033 4.033 26 C -0.107 4.107 27 C -0.129 4.129 28 C -0.151 4.151 29 C -0.124 4.124 30 C -0.128 4.128 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.271 0.729 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -5.350 -13.836 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.120 4.120 5 C -0.182 4.182 6 C -0.167 4.167 7 C -0.124 4.124 8 C -0.099 4.099 9 H 0.101 0.899 10 C -0.006 4.006 11 O -0.291 6.291 12 C 0.298 3.702 13 O -0.355 6.355 14 C -0.127 4.127 15 C 0.050 3.950 16 H 0.069 0.931 17 C -0.613 4.613 18 H 0.067 0.933 19 C -0.173 4.173 20 N -0.539 5.539 21 Si 0.898 3.102 22 H -0.217 1.217 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.033 4.033 26 C -0.125 4.125 27 C -0.147 4.147 28 C -0.169 4.169 29 C -0.142 4.142 30 C -0.146 4.146 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.134 0.866 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.152 -4.333 -13.443 15.831 hybrid contribution 1.362 -0.605 -0.385 1.539 sum 8.513 -4.938 -13.827 16.972 Atomic orbital electron populations 1.21964 0.94727 1.02324 1.02296 1.21158 0.95809 0.99610 0.93740 0.90657 1.20489 0.93211 1.00599 0.97705 1.22028 0.96194 1.02166 0.97790 1.22109 0.99573 1.00401 0.94613 1.20506 0.94232 1.02193 0.95486 1.21254 0.95180 1.01034 0.92389 0.89881 1.23056 0.99781 0.95009 0.82734 1.86489 1.68826 1.57684 1.16063 1.23900 0.78233 0.83740 0.84315 1.90702 1.31746 1.26688 1.86404 1.21468 1.00655 1.00424 0.90164 1.17943 0.96234 0.95631 0.85226 0.93077 1.21622 0.89067 1.11702 1.38885 0.93342 1.25612 1.06048 0.92943 0.92734 1.70708 1.15865 1.32781 1.34551 0.83552 0.74961 0.75708 0.75976 1.21667 1.21352 1.21581 1.20714 0.91207 0.93214 0.98180 1.20928 0.99164 0.95325 0.97062 1.21017 0.99518 0.99090 0.95115 1.20841 1.02045 0.94651 0.99370 1.20962 1.00928 0.95027 0.97328 1.21057 0.99202 0.99496 0.94864 0.91762 0.92460 0.92323 0.91027 0.90772 0.88166 0.88045 0.90824 0.90107 0.90939 0.91792 0.90464 0.89128 0.91729 0.86613 0.87358 0.87519 0.87393 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.66 37.15 0.32 -1.17 16 2 C -0.08 -0.82 2.40 -90.40 -0.22 -1.04 16 3 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 4 C -0.08 -0.70 5.44 -28.17 -0.15 -0.85 16 5 C -0.16 -1.45 9.80 -35.90 -0.35 -1.80 16 6 C -0.15 -1.42 9.80 -35.89 -0.35 -1.77 16 7 C -0.09 -0.94 5.24 -28.18 -0.15 -1.09 16 8 C -0.08 -0.91 2.11 -90.41 -0.19 -1.10 16 9 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 10 C 0.07 1.00 4.44 37.16 0.16 1.16 16 11 O -0.37 -6.39 9.97 -39.25 -0.39 -6.78 16 12 C 0.46 9.39 7.71 36.00 0.28 9.67 16 13 O -0.47 -11.51 14.77 -18.75 -0.28 -11.79 16 14 C -0.09 -1.76 5.05 -27.89 -0.14 -1.90 16 15 C 0.07 1.62 1.26 -92.92 -0.12 1.50 16 16 H 0.05 1.35 6.38 -51.93 -0.33 1.02 16 17 C -0.58 -15.43 6.42 -34.44 -0.22 -15.65 16 18 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 19 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 20 N -0.90 -27.16 13.62 55.43 0.75 -26.40 16 21 Si 1.07 26.03 29.91 -169.99 -5.08 20.95 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.03 -0.71 4.67 -104.62 -0.49 -1.20 16 26 C -0.11 -2.16 8.88 -39.58 -0.35 -2.51 16 27 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 28 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 29 C -0.12 -2.26 10.05 -39.59 -0.40 -2.66 16 30 C -0.13 -2.65 9.37 -39.58 -0.37 -3.02 16 31 H 0.06 0.69 6.28 -51.93 -0.33 0.37 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.10 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 40 H 0.07 1.10 6.13 -51.93 -0.32 0.78 16 41 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 43 H 0.09 1.69 7.85 -51.93 -0.41 1.28 16 44 H 0.27 8.03 6.37 -40.82 -0.26 7.77 16 45 H 0.12 2.27 7.80 -52.49 -0.41 1.86 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 48 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 49 H 0.11 2.25 7.95 -52.49 -0.42 1.83 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -31.37 394.48 -10.69 -42.06 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.01 Total: 4.30 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -3.63 Total: -28.29 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.75 Total: -26.40 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.67 Total: -18.57 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.37 -10.69 -42.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796515879.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.489 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds