Wall clock time and date at job start Tue Mar 31 2020 15:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47167 * 239.99910 * 2 1 3 5 5 O 1.45197 * 109.47536 * 119.99828 * 2 1 3 6 6 C 1.34636 * 117.00097 * 60.00243 * 5 2 1 7 7 O 1.21514 * 119.99595 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00599 * 180.02562 * 6 5 2 9 9 C 1.47160 * 120.97615 * 355.17038 * 8 6 5 10 10 C 1.53294 * 108.37875 * 129.47913 * 9 8 6 11 11 O 1.42967 * 109.22404 * 52.30244 * 10 9 8 12 12 C 1.42950 * 114.16630 * 297.41813 * 11 10 9 13 13 C 1.47163 * 120.94840 * 175.15493 * 8 6 5 14 14 H 1.08991 * 109.64662 * 110.77194 * 13 8 6 15 15 C 1.53007 * 109.72716 * 350.21679 * 13 8 6 16 16 C 1.50691 * 109.47238 * 78.93709 * 15 13 8 17 17 O 1.21282 * 120.00053 * 0.02562 * 16 15 13 18 18 N 1.34777 * 120.00400 * 179.97438 * 16 15 13 19 19 C 1.46496 * 120.00669 * 180.02562 * 18 16 15 20 20 C 1.50693 * 109.47491 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99997 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99938 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00208 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99805 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47310 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46832 * 120.00289 * 24 22 20 27 27 H 1.48492 * 109.47303 * 240.00041 * 24 22 20 28 28 H 1.09010 * 109.46923 * 299.99955 * 1 2 3 29 29 H 1.08998 * 109.47727 * 60.00096 * 1 2 3 30 30 H 1.09007 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47451 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46878 * 299.99740 * 3 2 1 33 33 H 1.08996 * 109.47232 * 60.00315 * 3 2 1 34 34 H 1.08998 * 109.47133 * 299.99814 * 4 2 1 35 35 H 1.09000 * 109.47033 * 60.00163 * 4 2 1 36 36 H 1.08999 * 109.47293 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.68075 * 9.76239 * 9 8 6 38 38 H 1.09001 * 109.71144 * 249.21739 * 9 8 6 39 39 H 1.09003 * 109.51582 * 292.37741 * 10 9 8 40 40 H 1.09001 * 109.51029 * 172.22566 * 10 9 8 41 41 H 1.09008 * 109.51617 * 182.50624 * 12 11 10 42 42 H 1.08999 * 109.51273 * 302.60002 * 12 11 10 43 43 H 1.08997 * 109.47328 * 198.94462 * 15 13 8 44 44 H 1.09012 * 109.46623 * 318.94103 * 15 13 8 45 45 H 0.97001 * 119.99446 * 0.02562 * 18 16 15 46 46 H 1.09007 * 109.47178 * 300.00692 * 19 18 16 47 47 H 1.09007 * 109.46809 * 60.00008 * 19 18 16 48 48 H 0.96999 * 120.00179 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0674 -2.6654 2.4171 9 6 3.0009 -2.0703 3.3867 10 6 2.4198 -2.2549 4.7931 11 8 2.0925 -3.6325 4.9901 12 6 1.0880 -4.1282 4.1020 13 6 1.5996 -4.0395 2.6597 14 1 2.4247 -4.7376 2.5192 15 6 0.4663 -4.3781 1.6891 16 6 1.0452 -4.7200 0.3405 17 8 2.2461 -4.6958 0.1723 18 7 0.2287 -5.0538 -0.6784 19 6 0.7914 -5.3868 -1.9894 20 6 -0.3248 -5.7202 -2.9453 21 1 -1.3509 -5.6870 -2.6100 22 6 -0.0361 -6.0677 -4.2480 23 7 1.2135 -6.1086 -4.6562 24 14 -1.4197 -6.4817 -5.4327 25 1 -2.7236 -6.3625 -4.7321 26 1 -1.3870 -5.5398 -6.5804 27 1 -1.2484 -7.8711 -5.9277 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 3.1212 -1.0077 3.1757 38 1 3.9676 -2.5696 3.3204 39 1 1.5201 -1.6484 4.8979 40 1 3.1564 -1.9460 5.5348 41 1 0.8664 -5.1672 4.3464 42 1 0.1832 -3.5292 4.2050 43 1 -0.0957 -5.2308 2.0701 44 1 -0.1979 -3.5192 1.5923 45 1 -0.7317 -5.0736 -0.5437 46 1 1.3534 -4.5342 -2.3707 47 1 1.4557 -6.2456 -1.8921 48 1 1.4166 -6.3534 -5.5725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803240042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:55 Heat of formation + Delta-G solvation = -143.485594 kcal Electronic energy + Delta-G solvation = -30862.149352 eV Core-core repulsion = 26725.358137 eV Total energy + Delta-G solvation = -4136.791215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15274 -39.40365 -38.35379 -36.84040 -34.91388 -34.09588 -33.75441 -32.60456 -32.10002 -29.06185 -27.61492 -27.37767 -27.19158 -26.27295 -23.74425 -23.14205 -22.16331 -20.85083 -19.51862 -19.12595 -17.79068 -17.15859 -16.73945 -16.32220 -16.09819 -15.71979 -15.33961 -15.27370 -15.14828 -14.78904 -14.61266 -14.34868 -13.95657 -13.82670 -13.51213 -13.40126 -12.72027 -12.50841 -12.40185 -12.28040 -12.08765 -11.95466 -11.79239 -11.77034 -11.56966 -11.40588 -11.35672 -11.14769 -11.07929 -10.91926 -10.81886 -10.78371 -10.37156 -10.21279 -10.13407 -9.34767 -9.23954 -8.65851 -8.60769 -8.56077 -7.57089 -6.06626 -4.11829 2.11775 2.97639 3.28298 3.35153 3.38643 3.55170 3.74385 3.92792 4.25242 4.42632 4.64816 4.77349 4.79435 4.81609 4.82013 4.93027 4.98653 5.08399 5.14315 5.29246 5.31656 5.45152 5.48380 5.53465 5.58846 5.65136 5.68151 5.70797 5.73715 5.83291 5.97965 6.04482 6.07657 6.13112 6.36369 6.45713 6.59308 6.70744 6.83770 7.44930 7.50885 7.71697 7.73788 7.86744 8.12297 8.51263 8.88805 9.00034 9.43652 9.59245 11.03790 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.004044 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.466981 B = 6922.845048 C = 8462.545635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.139 3.861 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.369 6.369 6 C 0.658 3.342 7 O -0.536 6.536 8 N -0.592 5.592 9 C 0.080 3.920 10 C 0.048 3.952 11 O -0.378 6.378 12 C 0.052 3.948 13 C 0.145 3.855 14 H 0.098 0.902 15 C -0.140 4.140 16 C 0.542 3.458 17 O -0.573 6.573 18 N -0.714 5.714 19 C 0.258 3.742 20 C -0.536 4.536 21 H 0.061 0.939 22 C 0.062 3.938 23 N -0.887 5.887 24 Si 0.900 3.100 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.385 0.615 46 H 0.022 0.978 47 H 0.020 0.980 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 13.275 18.587 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.102 3.898 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.284 6.284 6 C 0.413 3.587 7 O -0.424 6.424 8 N -0.334 5.334 9 C -0.044 4.044 10 C -0.030 4.030 11 O -0.296 6.296 12 C -0.026 4.026 13 C 0.043 3.957 14 H 0.116 0.884 15 C -0.180 4.180 16 C 0.329 3.671 17 O -0.455 6.455 18 N -0.362 5.362 19 C 0.136 3.864 20 C -0.574 4.574 21 H 0.079 0.921 22 C -0.141 4.141 23 N -0.525 5.525 24 Si 0.728 3.272 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.216 0.784 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.353 13.045 18.083 22.300 hybrid contribution -1.204 0.032 -1.060 1.605 sum -0.851 13.077 17.022 21.482 Atomic orbital electron populations 1.22497 0.94080 1.05235 1.01965 1.22043 0.94220 0.91157 0.82386 1.21844 1.02120 0.92829 1.02742 1.22499 1.01382 1.04313 0.95813 1.86219 1.71894 1.23826 1.46464 1.17901 0.78973 0.80269 0.81515 1.90865 1.41058 1.68370 1.42143 1.46766 1.48518 1.14528 1.23569 1.22376 0.93206 1.00351 0.88425 1.23003 1.00359 0.83361 0.96243 1.87970 1.58775 1.25661 1.57166 1.23137 0.90462 1.00980 0.87974 1.21730 0.98319 0.81549 0.94110 0.88434 1.22043 0.98375 1.03243 0.94368 1.19524 0.86921 0.75125 0.85497 1.90593 1.15384 1.55401 1.84076 1.46164 1.09096 1.68521 1.12388 1.18921 0.94240 0.95738 0.77452 1.21313 0.93000 1.47534 0.95574 0.92075 1.24943 0.95722 0.95307 0.98116 1.69998 1.17505 1.47599 1.17443 0.86416 0.81966 0.78007 0.80831 1.19692 1.20925 1.20895 0.92728 0.91223 0.89131 0.91647 0.90247 0.91867 0.88456 0.91390 0.92488 0.88259 0.90377 0.92637 0.87590 0.87129 0.92460 0.90154 0.87349 0.78355 0.96042 0.96222 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 8.37 37.15 0.31 -1.98 16 2 C 0.14 1.84 1.13 -90.62 -0.10 1.74 16 3 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 4 C -0.18 -2.91 8.37 37.16 0.31 -2.60 16 5 O -0.37 -5.32 8.58 -40.31 -0.35 -5.67 16 6 C 0.66 10.62 7.14 54.05 0.39 11.01 16 7 O -0.54 -9.92 5.49 -26.30 -0.14 -10.06 16 8 N -0.59 -8.31 3.02 -170.48 -0.51 -8.82 16 9 C 0.08 0.84 6.67 -3.53 -0.02 0.82 16 10 C 0.05 0.41 6.98 37.31 0.26 0.67 16 11 O -0.38 -4.09 10.74 -35.23 -0.38 -4.47 16 12 C 0.05 0.53 6.21 37.31 0.23 0.77 16 13 C 0.15 2.00 2.69 -67.41 -0.18 1.82 16 14 H 0.10 1.56 7.42 -51.93 -0.39 1.18 16 15 C -0.14 -2.11 4.76 -27.88 -0.13 -2.24 16 16 C 0.54 11.46 4.99 -10.99 -0.05 11.41 16 17 O -0.57 -14.37 14.91 -15.31 -0.23 -14.60 16 18 N -0.71 -16.17 5.55 -61.48 -0.34 -16.51 16 19 C 0.26 7.21 5.43 -5.20 -0.03 7.18 16 20 C -0.54 -15.17 9.28 -34.44 -0.32 -15.48 16 21 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 24 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.39 5.88 -51.92 -0.31 1.09 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 1.99 5.88 -51.93 -0.31 1.69 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.94 6.99 -51.93 -0.36 0.58 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.97 8.02 -51.93 -0.42 0.56 16 44 H 0.11 1.62 6.16 -51.92 -0.32 1.30 16 45 H 0.38 7.71 8.32 -40.82 -0.34 7.37 16 46 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -35.40 377.33 -7.55 -42.95 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.89 Total: 7.52 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 0.89 Total: 13.76 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.12 Total: -51.61 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.10 Total: -34.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.40 -7.55 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803240042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.534 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds